Wall clock time and date at job start Mon Mar 30 2020 01:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42896 * 109.47260 * 2 1 4 4 C 1.52997 * 109.46975 * 239.99650 * 2 1 3 5 5 C 1.53006 * 109.47164 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47127 * 59.99836 * 5 4 2 7 7 C 1.53000 * 109.47060 * 300.00449 * 6 5 4 8 8 C 1.52996 * 109.47328 * 60.00126 * 7 6 5 9 9 H 1.08992 * 109.47554 * 59.99639 * 8 7 6 10 10 C 1.52997 * 109.46975 * 180.02562 * 8 7 6 11 11 C 1.50700 * 109.47531 * 294.99745 * 10 8 7 12 12 H 1.08003 * 119.99126 * 359.97438 * 11 10 8 13 13 C 1.37870 * 120.00569 * 180.02562 * 11 10 8 14 14 N 1.31517 * 120.00211 * 180.02562 * 13 11 10 15 15 Si 1.86807 * 120.00049 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.46797 * 89.99872 * 15 13 11 17 17 H 1.48497 * 109.47228 * 210.00583 * 15 13 11 18 18 H 1.48503 * 109.46619 * 330.00577 * 15 13 11 19 19 H 1.08996 * 109.47261 * 300.00516 * 1 2 3 20 20 H 1.09004 * 109.47368 * 60.00132 * 1 2 3 21 21 H 1.09001 * 109.47372 * 179.97438 * 1 2 3 22 22 H 0.96703 * 114.00193 * 299.99635 * 3 2 1 23 23 H 1.09001 * 109.47375 * 300.00370 * 4 2 1 24 24 H 1.09000 * 109.47140 * 60.00388 * 4 2 1 25 25 H 1.08998 * 109.46505 * 299.99708 * 5 4 2 26 26 H 1.08996 * 109.46884 * 180.02562 * 5 4 2 27 27 H 1.09002 * 109.47153 * 180.02562 * 6 5 4 28 28 H 1.09001 * 109.46832 * 60.00321 * 6 5 4 29 29 H 1.09004 * 109.46724 * 180.02562 * 7 6 5 30 30 H 1.09001 * 109.47194 * 299.99650 * 7 6 5 31 31 H 1.09004 * 109.47610 * 54.99797 * 10 8 7 32 32 H 1.09001 * 109.47532 * 174.99616 * 10 8 7 33 33 H 0.96999 * 119.99652 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5700 -0.7219 -1.2489 6 6 4.0795 -1.4434 0.0004 7 6 3.5694 -0.7221 1.2495 8 6 2.0395 -0.7216 1.2493 9 1 1.6757 -1.7490 1.2491 10 6 1.5295 0.0003 2.4981 11 6 1.9276 -0.7777 3.7259 12 1 2.4880 -1.6955 3.6253 13 6 1.5757 -0.3184 4.9773 14 7 1.9236 -0.9971 6.0487 15 14 0.6058 1.2687 5.1511 16 1 -0.8477 0.9657 5.1261 17 1 0.9533 1.9227 6.4383 18 1 0.9411 2.1792 4.0269 19 1 -0.3633 0.5139 0.8899 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 1.7210 1.8653 -0.7651 23 1 1.6765 -1.7490 -1.2492 24 1 1.6766 -0.2075 -2.1392 25 1 3.9336 0.3056 -1.2488 26 1 3.9332 -1.2354 -2.1391 27 1 5.1695 -1.4434 0.0008 28 1 3.7158 -2.4709 0.0002 29 1 3.9328 -1.2359 2.1396 30 1 3.9331 0.3055 1.2498 31 1 1.9644 0.9987 2.5438 32 1 0.4432 0.0789 2.4543 33 1 1.6763 -0.6737 6.9291 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075555466.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:46 Heat of formation + Delta-G solvation = -82.795798 kcal Electronic energy + Delta-G solvation = -13536.292396 eV Core-core repulsion = 11367.634043 eV Total energy + Delta-G solvation = -2168.658353 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.26796 -34.73957 -33.32523 -31.48646 -30.75960 -27.51094 -25.74439 -23.01880 -21.07234 -20.06127 -19.03273 -16.69957 -15.87645 -14.91342 -14.41360 -14.04334 -13.80652 -13.41903 -12.79195 -12.52969 -12.26246 -11.99963 -11.61529 -11.43338 -11.23383 -10.99117 -10.72210 -10.59118 -10.26002 -9.89949 -9.84727 -9.60424 -9.38770 -8.91916 -8.85345 -8.42385 -5.95316 -3.91109 3.36987 3.44575 3.52467 4.54521 4.70030 5.06529 5.15810 5.22504 5.39234 5.54852 5.64555 5.73594 5.89133 5.94884 6.01840 6.12114 6.17884 6.26841 6.33650 6.49936 6.57711 6.61557 6.71984 7.01374 7.08713 7.23667 7.42501 7.67417 7.91529 8.15579 8.64356 9.10441 9.68695 11.18202 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.043701 B = 0.011769 C = 0.010236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.557131 B = 2378.635457 C = 2734.734785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.130 3.870 3 O -0.548 6.548 4 C -0.142 4.142 5 C -0.112 4.112 6 C -0.121 4.121 7 C -0.103 4.103 8 C -0.055 4.055 9 H 0.068 0.932 10 C -0.007 4.007 11 C -0.513 4.513 12 H 0.072 0.928 13 C 0.065 3.935 14 N -0.908 5.908 15 Si 0.875 3.125 16 H -0.279 1.279 17 H -0.290 1.290 18 H -0.263 1.263 19 H 0.071 0.929 20 H 0.046 0.954 21 H 0.062 0.938 22 H 0.359 0.641 23 H 0.066 0.934 24 H 0.054 0.946 25 H 0.064 0.936 26 H 0.049 0.951 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.024 0.976 32 H 0.011 0.989 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.371 2.034 -14.452 14.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.090 3.910 3 O -0.351 6.351 4 C -0.179 4.179 5 C -0.150 4.150 6 C -0.158 4.158 7 C -0.140 4.140 8 C -0.073 4.073 9 H 0.087 0.913 10 C -0.044 4.044 11 C -0.551 4.551 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.547 5.547 15 Si 0.703 3.297 16 H -0.205 1.205 17 H -0.216 1.216 18 H -0.187 1.187 19 H 0.090 0.910 20 H 0.065 0.935 21 H 0.081 0.919 22 H 0.204 0.796 23 H 0.085 0.915 24 H 0.072 0.928 25 H 0.083 0.917 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.042 0.958 32 H 0.029 0.971 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.105 1.831 -13.689 13.811 hybrid contribution -0.887 0.904 -0.310 1.304 sum -0.991 2.735 -13.999 14.298 Atomic orbital electron populations 1.22533 0.96681 1.02449 1.01934 1.21371 0.91768 0.82265 0.95592 1.86687 1.76815 1.23373 1.48265 1.22216 0.96776 1.01201 0.97755 1.21428 0.95058 1.00999 0.97480 1.21600 0.99507 0.99167 0.95559 1.21439 0.95476 1.00587 0.96503 1.20990 0.95450 0.98032 0.92839 0.91332 1.19616 0.95426 0.96647 0.92691 1.21212 1.35146 1.09352 0.89363 0.91017 1.25008 0.95767 0.96836 0.95956 1.69923 1.47484 1.39376 0.97952 0.86832 0.80483 0.84837 0.77539 1.20545 1.21587 1.18718 0.91005 0.93541 0.91933 0.79575 0.91516 0.92754 0.91713 0.93187 0.92837 0.92703 0.90959 0.92025 0.95750 0.97107 0.92951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.73 8.47 37.16 0.31 -2.42 16 2 C 0.13 2.15 0.66 -90.62 -0.06 2.09 16 3 O -0.55 -9.14 11.05 -35.23 -0.39 -9.53 16 4 C -0.14 -1.94 4.92 -26.73 -0.13 -2.07 16 5 C -0.11 -1.55 5.78 -26.73 -0.15 -1.70 16 6 C -0.12 -1.89 5.92 -26.73 -0.16 -2.05 16 7 C -0.10 -2.01 4.87 -26.73 -0.13 -2.14 16 8 C -0.05 -1.11 1.50 -90.62 -0.14 -1.25 16 9 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 10 C -0.01 -0.16 3.08 -27.88 -0.09 -0.25 16 11 C -0.51 -14.80 8.96 -34.44 -0.31 -15.11 16 12 H 0.07 2.21 7.30 -52.48 -0.38 1.82 16 13 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 14 N -0.91 -28.54 13.96 55.43 0.77 -27.76 16 15 Si 0.88 22.49 27.47 -169.99 -4.67 17.82 16 16 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 17 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 18 H -0.26 -6.61 6.54 56.52 0.37 -6.24 16 19 H 0.07 1.24 6.32 -51.93 -0.33 0.92 16 20 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 21 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 22 H 0.36 4.32 9.05 45.56 0.41 4.73 16 23 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.92 7.68 -51.93 -0.40 0.52 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.07 1.58 6.95 -51.93 -0.36 1.22 16 30 H 0.06 1.26 7.68 -51.93 -0.40 0.87 16 31 H 0.02 0.63 6.89 -51.93 -0.36 0.28 16 32 H 0.01 0.26 5.60 -51.93 -0.29 -0.03 16 33 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 253.78 15.07 3.82 3.82 Total: -1.00 -31.55 253.78 -6.06 -37.61 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -4.66 Total: 1.12 kcal Atomic # 6 Polarization: -22.13 SS G_CDS: -0.95 Total: -23.08 kcal Atomic # 7 Polarization: -28.54 SS G_CDS: 0.77 Total: -27.76 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: -0.39 Total: -9.53 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.67 Total: 17.82 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -31.55 -6.06 -37.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075555466.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.186 kcal (2) G-P(sol) polarization free energy of solvation -31.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds