Wall clock time and date at job start Mon Mar 30 2020 01:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42896 * 109.47260 * 2 1 4 4 C 1.52997 * 109.46975 * 239.99650 * 2 1 3 5 5 C 1.53006 * 109.47164 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47127 * 59.99836 * 5 4 2 7 7 C 1.53000 * 109.47060 * 300.00449 * 6 5 4 8 8 C 1.52996 * 109.47328 * 60.00126 * 7 6 5 9 9 H 1.08992 * 109.47554 * 59.99639 * 8 7 6 10 10 C 1.52997 * 109.46975 * 180.02562 * 8 7 6 11 11 C 1.50700 * 109.47531 * 294.99745 * 10 8 7 12 12 H 1.08003 * 119.99126 * 359.97438 * 11 10 8 13 13 C 1.37870 * 120.00569 * 180.02562 * 11 10 8 14 14 N 1.31517 * 120.00211 * 180.02562 * 13 11 10 15 15 Si 1.86807 * 120.00049 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.46797 * 89.99872 * 15 13 11 17 17 H 1.48497 * 109.47228 * 210.00583 * 15 13 11 18 18 H 1.48503 * 109.46619 * 330.00577 * 15 13 11 19 19 H 1.08996 * 109.47261 * 300.00516 * 1 2 3 20 20 H 1.09004 * 109.47368 * 60.00132 * 1 2 3 21 21 H 1.09001 * 109.47372 * 179.97438 * 1 2 3 22 22 H 0.96703 * 114.00193 * 299.99635 * 3 2 1 23 23 H 1.09001 * 109.47375 * 300.00370 * 4 2 1 24 24 H 1.09000 * 109.47140 * 60.00388 * 4 2 1 25 25 H 1.08998 * 109.46505 * 299.99708 * 5 4 2 26 26 H 1.08996 * 109.46884 * 180.02562 * 5 4 2 27 27 H 1.09002 * 109.47153 * 180.02562 * 6 5 4 28 28 H 1.09001 * 109.46832 * 60.00321 * 6 5 4 29 29 H 1.09004 * 109.46724 * 180.02562 * 7 6 5 30 30 H 1.09001 * 109.47194 * 299.99650 * 7 6 5 31 31 H 1.09004 * 109.47610 * 54.99797 * 10 8 7 32 32 H 1.09001 * 109.47532 * 174.99616 * 10 8 7 33 33 H 0.96999 * 119.99652 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5700 -0.7219 -1.2489 6 6 4.0795 -1.4434 0.0004 7 6 3.5694 -0.7221 1.2495 8 6 2.0395 -0.7216 1.2493 9 1 1.6757 -1.7490 1.2491 10 6 1.5295 0.0003 2.4981 11 6 1.9276 -0.7777 3.7259 12 1 2.4880 -1.6955 3.6253 13 6 1.5757 -0.3184 4.9773 14 7 1.9236 -0.9971 6.0487 15 14 0.6058 1.2687 5.1511 16 1 -0.8477 0.9657 5.1261 17 1 0.9533 1.9227 6.4383 18 1 0.9411 2.1792 4.0269 19 1 -0.3633 0.5139 0.8899 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 1.7210 1.8653 -0.7651 23 1 1.6765 -1.7490 -1.2492 24 1 1.6766 -0.2075 -2.1392 25 1 3.9336 0.3056 -1.2488 26 1 3.9332 -1.2354 -2.1391 27 1 5.1695 -1.4434 0.0008 28 1 3.7158 -2.4709 0.0002 29 1 3.9328 -1.2359 2.1396 30 1 3.9331 0.3055 1.2498 31 1 1.9644 0.9987 2.5438 32 1 0.4432 0.0789 2.4543 33 1 1.6763 -0.6737 6.9291 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075555466.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:46 Heat of formation + Delta-G solvation = -104.789839 kcal Electronic energy + Delta-G solvation = -13537.246129 eV Core-core repulsion = 11367.634043 eV Total energy + Delta-G solvation = -2169.612086 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.61150 -36.12061 -35.23305 -33.33068 -32.07886 -29.24097 -27.15094 -24.77379 -22.53366 -21.49943 -20.53333 -18.90147 -17.11675 -16.41023 -16.19905 -15.52037 -15.10833 -14.98159 -14.62761 -14.15285 -13.80168 -13.43247 -13.25614 -12.88191 -12.63804 -12.41937 -12.30792 -12.05561 -11.84923 -11.65408 -11.45722 -11.35970 -11.15429 -10.75109 -10.53716 -10.31246 -8.27481 -6.28425 1.31580 1.34798 1.48366 2.36497 3.07836 3.51163 3.87563 3.92077 4.01388 4.29957 4.33057 4.51327 4.59366 4.68913 4.76430 4.86792 4.96125 5.03739 5.07813 5.19512 5.24366 5.26843 5.32462 5.43332 5.50183 5.55358 5.63986 5.74700 5.83145 6.33500 6.78487 7.13614 7.34997 8.89330 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.043701 B = 0.011769 C = 0.010236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.557131 B = 2378.635457 C = 2734.734785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.134 3.866 3 O -0.568 6.568 4 C -0.136 4.136 5 C -0.108 4.108 6 C -0.117 4.117 7 C -0.099 4.099 8 C -0.059 4.059 9 H 0.059 0.941 10 C 0.002 3.998 11 C -0.519 4.519 12 H 0.034 0.966 13 C 0.003 3.997 14 N -0.953 5.953 15 Si 0.945 3.055 16 H -0.265 1.265 17 H -0.284 1.284 18 H -0.254 1.254 19 H 0.045 0.955 20 H 0.081 0.919 21 H 0.065 0.935 22 H 0.382 0.618 23 H 0.071 0.929 24 H 0.088 0.912 25 H 0.062 0.938 26 H 0.079 0.921 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.032 0.968 30 H 0.047 0.953 31 H 0.010 0.990 32 H 0.016 0.984 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.322 3.177 -17.131 17.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.094 3.906 3 O -0.376 6.376 4 C -0.173 4.173 5 C -0.146 4.146 6 C -0.154 4.154 7 C -0.137 4.137 8 C -0.077 4.077 9 H 0.078 0.922 10 C -0.035 4.035 11 C -0.557 4.557 12 H 0.052 0.948 13 C -0.193 4.193 14 N -0.595 5.595 15 Si 0.769 3.231 16 H -0.190 1.190 17 H -0.210 1.210 18 H -0.178 1.178 19 H 0.064 0.936 20 H 0.100 0.900 21 H 0.084 0.916 22 H 0.231 0.769 23 H 0.090 0.910 24 H 0.106 0.894 25 H 0.081 0.919 26 H 0.097 0.903 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.028 0.972 32 H 0.034 0.966 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.060 2.977 -16.398 16.700 hybrid contribution -0.525 0.492 0.553 0.907 sum -1.585 3.469 -15.845 16.298 Atomic orbital electron populations 1.22509 0.95667 1.02885 1.02417 1.21206 0.92440 0.82353 0.94637 1.86627 1.77203 1.23653 1.50092 1.22172 0.96499 1.01451 0.97194 1.21418 0.95253 1.00839 0.97046 1.21564 1.00218 0.99037 0.94616 1.21335 0.95342 0.99760 0.97243 1.20939 0.95743 0.97695 0.93350 0.92228 1.19497 0.95538 0.95519 0.92985 1.21541 1.34202 1.08502 0.91468 0.94765 1.25952 0.97107 1.00711 0.95572 1.70071 1.49224 1.41535 0.98632 0.85733 0.79389 0.80209 0.77797 1.18992 1.20964 1.17813 0.93553 0.89984 0.91569 0.76943 0.91030 0.89395 0.91924 0.90291 0.91771 0.92377 0.94935 0.93372 0.97202 0.96603 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.92 8.47 71.98 0.61 -4.31 16 2 C 0.13 4.09 0.66 -10.80 -0.01 4.08 16 3 O -0.57 -17.52 11.05 -148.98 -1.65 -19.16 16 4 C -0.14 -3.15 4.92 30.60 0.15 -3.00 16 5 C -0.11 -2.59 5.78 30.60 0.18 -2.42 16 6 C -0.12 -3.51 5.92 30.59 0.18 -3.33 16 7 C -0.10 -3.98 4.87 30.59 0.15 -3.83 16 8 C -0.06 -2.40 1.50 -10.80 -0.02 -2.41 16 9 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 10 C 0.00 0.09 3.08 29.85 0.09 0.18 16 11 C -0.52 -31.19 8.96 25.60 0.23 -30.96 16 12 H 0.03 2.24 7.30 -2.91 -0.02 2.22 16 13 C 0.00 0.16 5.47 84.65 0.46 0.62 16 14 N -0.95 -61.85 13.96 21.44 0.30 -61.55 16 15 Si 0.94 46.88 27.47 68.60 1.88 48.77 16 16 H -0.26 -12.47 7.11 99.48 0.71 -11.77 16 17 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 18 H -0.25 -12.16 6.54 99.48 0.65 -11.51 16 19 H 0.05 1.51 6.32 -2.39 -0.02 1.49 16 20 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 21 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 22 H 0.38 7.73 9.05 -74.05 -0.67 7.06 16 23 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.06 1.56 7.68 -2.39 -0.02 1.54 16 26 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.03 1.50 6.95 -2.39 -0.02 1.49 16 30 H 0.05 2.01 7.68 -2.39 -0.02 2.00 16 31 H 0.01 0.51 6.89 -2.39 -0.02 0.49 16 32 H 0.02 0.77 5.60 -2.39 -0.01 0.76 16 33 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 Total: -1.00 -70.33 253.78 2.91 -67.42 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: 0.35 Total: 9.89 kcal Atomic # 6 Polarization: -47.39 SS G_CDS: 2.03 Total: -45.36 kcal Atomic # 7 Polarization: -61.85 SS G_CDS: 0.30 Total: -61.55 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -1.65 Total: -19.16 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 1.88 Total: 48.77 kcal Total: -70.33 2.91 -67.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075555466.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.371 kcal (2) G-P(sol) polarization free energy of solvation -70.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds