Wall clock time and date at job start Mon Mar 30 2020 01:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42903 * 109.46459 * 2 1 4 4 C 1.53001 * 109.47376 * 119.99809 * 2 1 3 5 5 C 1.52998 * 109.46901 * 59.99884 * 4 2 1 6 6 C 1.53009 * 109.46816 * 60.00484 * 5 4 2 7 7 C 1.52998 * 109.46634 * 299.99494 * 6 5 4 8 8 C 1.52998 * 109.47429 * 60.00482 * 7 6 5 9 9 H 1.08997 * 109.47329 * 59.99386 * 8 7 6 10 10 C 1.53001 * 109.47224 * 179.97438 * 8 7 6 11 11 C 1.50700 * 109.47160 * 294.99678 * 10 8 7 12 12 H 1.07998 * 120.00121 * 0.02562 * 11 10 8 13 13 C 1.37881 * 119.99914 * 180.02562 * 11 10 8 14 14 N 1.31509 * 119.99745 * 180.02562 * 13 11 10 15 15 Si 1.86799 * 120.00049 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.47123 * 89.99918 * 15 13 11 17 17 H 1.48495 * 109.47179 * 210.00177 * 15 13 11 18 18 H 1.48501 * 109.46962 * 330.00296 * 15 13 11 19 19 H 1.08997 * 109.47258 * 60.00066 * 1 2 3 20 20 H 1.08997 * 109.46943 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.47269 * 299.99893 * 1 2 3 22 22 H 0.96700 * 114.00311 * 60.00313 * 3 2 1 23 23 H 1.08997 * 109.47215 * 180.02562 * 4 2 1 24 24 H 1.08999 * 109.47164 * 300.00361 * 4 2 1 25 25 H 1.08997 * 109.47655 * 300.00305 * 5 4 2 26 26 H 1.09005 * 109.46908 * 179.97438 * 5 4 2 27 27 H 1.08997 * 109.46850 * 179.97438 * 6 5 4 28 28 H 1.08997 * 109.47155 * 59.99515 * 6 5 4 29 29 H 1.08997 * 109.47366 * 299.99891 * 7 6 5 30 30 H 1.09009 * 109.46785 * 180.02562 * 7 6 5 31 31 H 1.08998 * 109.46920 * 54.99971 * 10 8 7 32 32 H 1.09003 * 109.46957 * 174.99908 * 10 8 7 33 33 H 0.96998 * 119.99642 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.5301 -2.1637 1.2493 6 6 2.0402 -2.8849 0.0000 7 6 1.5301 -2.1637 -1.2492 8 6 2.0400 -0.7212 -1.2493 9 1 3.1300 -0.7211 -1.2492 10 6 1.5304 -0.0002 -2.4988 11 6 2.1318 -0.6356 -3.7258 12 1 2.8094 -1.4705 -3.6246 13 6 1.8170 -0.1510 -4.9777 14 7 2.3414 -0.7059 -6.0485 15 14 0.6445 1.2926 -5.1528 16 1 1.4150 2.5619 -5.1279 17 1 -0.0870 1.1828 -6.4404 18 1 -0.3264 1.2808 -4.0293 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 1.7209 1.8654 0.7651 23 1 3.1301 -0.7208 1.2495 24 1 1.6767 -0.2074 2.1392 25 1 0.4401 -2.1638 1.2493 26 1 1.8939 -2.6776 2.1391 27 1 1.6772 -3.9127 0.0002 28 1 3.1302 -2.8849 0.0000 29 1 0.4401 -2.1638 -1.2492 30 1 1.8931 -2.6778 -2.1392 31 1 0.4442 -0.0771 -2.5450 32 1 1.8187 1.0501 -2.4552 33 1 2.1197 -0.3652 -6.9292 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075555470.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:47 Heat of formation + Delta-G solvation = -103.558648 kcal Electronic energy + Delta-G solvation = -13543.627897 eV Core-core repulsion = 11374.069199 eV Total energy + Delta-G solvation = -2169.558698 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.76800 -36.51469 -35.29970 -33.24415 -31.40685 -29.35723 -27.48689 -24.76624 -22.99422 -21.70747 -19.58076 -18.93633 -17.67127 -16.41610 -16.34359 -15.68007 -15.06387 -14.70373 -14.58383 -14.17917 -13.87635 -13.75152 -13.17578 -12.91230 -12.68397 -12.37437 -12.28720 -12.06873 -11.86687 -11.70115 -11.39212 -11.37272 -11.09083 -10.73385 -10.65311 -10.37419 -8.28050 -6.29236 1.32780 1.33953 1.46548 2.35929 3.07239 3.40076 3.84142 3.87437 4.11897 4.28146 4.34283 4.42371 4.50509 4.62977 4.76077 4.80541 4.95225 5.02913 5.07951 5.17752 5.19281 5.26081 5.36232 5.41872 5.47444 5.50968 5.62555 5.74499 5.77911 6.32678 6.77276 7.09096 7.34039 8.88809 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.043597 B = 0.011766 C = 0.010239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.094493 B = 2379.232147 C = 2734.015166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.131 3.869 3 O -0.579 6.579 4 C -0.135 4.135 5 C -0.111 4.111 6 C -0.119 4.119 7 C -0.103 4.103 8 C -0.058 4.058 9 H 0.036 0.964 10 C 0.002 3.998 11 C -0.520 4.520 12 H 0.033 0.967 13 C 0.003 3.997 14 N -0.953 5.953 15 Si 0.947 3.053 16 H -0.273 1.273 17 H -0.281 1.281 18 H -0.249 1.249 19 H 0.042 0.958 20 H 0.077 0.923 21 H 0.080 0.920 22 H 0.385 0.615 23 H 0.055 0.945 24 H 0.088 0.912 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.040 0.960 31 H 0.019 0.981 32 H 0.007 0.993 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.378 0.274 17.078 17.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.091 3.909 3 O -0.387 6.387 4 C -0.173 4.173 5 C -0.149 4.149 6 C -0.157 4.157 7 C -0.140 4.140 8 C -0.077 4.077 9 H 0.055 0.945 10 C -0.035 4.035 11 C -0.558 4.558 12 H 0.051 0.949 13 C -0.193 4.193 14 N -0.594 5.594 15 Si 0.771 3.229 16 H -0.198 1.198 17 H -0.207 1.207 18 H -0.173 1.173 19 H 0.061 0.939 20 H 0.096 0.904 21 H 0.099 0.901 22 H 0.233 0.767 23 H 0.074 0.926 24 H 0.106 0.894 25 H 0.094 0.906 26 H 0.101 0.899 27 H 0.093 0.907 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.059 0.941 31 H 0.037 0.963 32 H 0.025 0.975 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.106 0.080 16.346 17.126 hybrid contribution -0.209 0.689 -0.525 0.891 sum -5.315 0.769 15.821 16.708 Atomic orbital electron populations 1.22561 0.95183 1.03394 1.02211 1.21253 0.93286 0.81667 0.94719 1.86629 1.77541 1.24220 1.50310 1.22159 1.00887 0.97060 0.97156 1.21548 1.01516 0.94270 0.97531 1.21601 1.00347 0.99417 0.94330 1.21483 1.00537 0.94125 0.97893 1.20873 0.98361 0.95090 0.93368 0.94548 1.19479 0.95772 0.95290 0.92958 1.21522 1.26867 1.15967 0.91444 0.94865 1.25963 0.97979 0.99868 0.95537 1.70068 1.46711 1.43979 0.98653 0.85703 0.79796 0.79434 0.77962 1.19815 1.20660 1.17308 0.93880 0.90418 0.90119 0.76661 0.92580 0.89371 0.90553 0.89888 0.90667 0.93027 0.91631 0.94124 0.96276 0.97470 0.92661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.86 7.77 71.98 0.56 -4.31 16 2 C 0.13 4.12 0.83 -10.79 -0.01 4.11 16 3 O -0.58 -19.05 12.22 -148.98 -1.82 -20.87 16 4 C -0.13 -3.25 5.07 30.59 0.16 -3.09 16 5 C -0.11 -2.42 5.65 30.60 0.17 -2.25 16 6 C -0.12 -3.32 5.92 30.60 0.18 -3.14 16 7 C -0.10 -3.82 4.74 30.59 0.14 -3.68 16 8 C -0.06 -2.42 1.65 -10.79 -0.02 -2.44 16 9 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 10 C 0.00 0.12 2.94 29.85 0.09 0.20 16 11 C -0.52 -31.50 8.96 25.60 0.23 -31.27 16 12 H 0.03 2.20 7.30 -2.91 -0.02 2.18 16 13 C 0.00 0.16 5.47 84.66 0.46 0.62 16 14 N -0.95 -61.98 13.96 21.45 0.30 -61.68 16 15 Si 0.95 47.05 27.47 68.60 1.88 48.94 16 16 H -0.27 -13.25 7.11 99.48 0.71 -12.55 16 17 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 18 H -0.25 -11.60 6.54 99.48 0.65 -10.95 16 19 H 0.04 1.41 6.55 -2.39 -0.02 1.39 16 20 H 0.08 2.00 4.81 -2.39 -0.01 1.99 16 21 H 0.08 1.65 8.14 -2.39 -0.02 1.64 16 22 H 0.38 8.27 9.05 -74.06 -0.67 7.60 16 23 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.08 1.50 6.43 -2.39 -0.02 1.49 16 26 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 27 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.07 2.29 6.43 -2.39 -0.02 2.27 16 30 H 0.04 1.78 6.95 -2.38 -0.02 1.77 16 31 H 0.02 0.94 5.77 -2.39 -0.01 0.93 16 32 H 0.01 0.37 6.96 -2.39 -0.02 0.35 16 33 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 Total: -1.00 -71.53 248.95 2.69 -68.83 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: 0.36 Total: 10.02 kcal Atomic # 6 Polarization: -47.20 SS G_CDS: 1.97 Total: -45.24 kcal Atomic # 7 Polarization: -61.98 SS G_CDS: 0.30 Total: -61.68 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -1.82 Total: -20.87 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 1.88 Total: 48.94 kcal Total: -71.53 2.69 -68.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075555470.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.724 kcal (2) G-P(sol) polarization free energy of solvation -71.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds