Wall clock time and date at job start Mon Mar 30 2020 02:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46866 * 2 1 4 4 C 1.52997 * 109.46974 * 119.99774 * 2 1 3 5 5 C 1.52996 * 109.47165 * 180.02562 * 4 2 1 6 6 O 1.42898 * 109.47379 * 180.02562 * 5 4 2 7 7 C 1.34924 * 116.99705 * 269.99873 * 6 5 4 8 8 H 1.07997 * 120.00326 * 359.97438 * 7 6 5 9 9 C 1.38642 * 119.99789 * 179.97438 * 7 6 5 10 10 N 1.31576 * 119.99891 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 119.99765 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47414 * 60.00009 * 11 9 7 13 13 H 1.48503 * 109.46964 * 179.97438 * 11 9 7 14 14 H 1.48507 * 109.47114 * 299.99803 * 11 9 7 15 15 C 1.53002 * 109.46972 * 300.00293 * 5 4 2 16 16 C 1.52997 * 109.47415 * 59.99860 * 15 5 4 17 17 H 1.09000 * 109.47140 * 59.99976 * 16 15 5 18 18 C 1.52999 * 109.47269 * 180.02562 * 16 15 5 19 19 C 1.52999 * 109.47000 * 240.00185 * 2 1 3 20 20 H 1.09000 * 109.46866 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47372 * 300.00408 * 1 2 3 22 22 H 1.09004 * 109.47107 * 60.00109 * 1 2 3 23 23 H 1.09000 * 109.47140 * 60.00393 * 4 2 1 24 24 H 1.09001 * 109.47375 * 300.00376 * 4 2 1 25 25 H 1.08996 * 109.47134 * 59.99508 * 5 4 2 26 26 H 0.97000 * 120.00011 * 180.02562 * 10 9 7 27 27 H 1.09000 * 109.46986 * 299.99742 * 15 5 4 28 28 H 1.09001 * 109.47601 * 180.02562 * 15 5 4 29 29 H 1.09001 * 109.47362 * 180.02562 * 18 16 15 30 30 H 1.09002 * 109.46716 * 299.99747 * 18 16 15 31 31 H 1.09000 * 109.47486 * 59.99665 * 18 16 15 32 32 H 1.08993 * 109.47839 * 60.00073 * 19 2 1 33 33 H 1.09000 * 109.47160 * 299.99635 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7207 1.2496 6 8 4.0463 -1.3948 2.4161 7 6 4.2500 -0.6429 3.5178 8 1 4.0540 0.4188 3.4908 9 6 4.7110 -1.2333 4.6844 10 7 4.9503 -2.5267 4.7171 11 14 4.9923 -0.1924 6.2098 12 1 3.7157 0.4501 6.6131 13 1 5.4821 -1.0555 7.3145 14 1 6.0023 0.8555 5.9147 15 6 4.0805 -1.4415 0.0004 16 6 3.5705 -0.7204 -1.2489 17 1 3.9335 0.3074 -1.2487 18 6 4.0805 -1.4416 -2.4981 19 6 2.0400 -0.7212 -1.2493 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.6767 -1.7489 1.2493 24 1 1.6766 -0.2074 2.1392 25 1 3.9329 0.3071 1.2497 26 1 5.2725 -2.9398 5.5335 27 1 3.7175 -2.4693 0.0002 28 1 5.1705 -1.4416 0.0007 29 1 3.7176 -0.9276 -3.3881 30 1 5.1706 -1.4416 -2.4981 31 1 3.7173 -2.4693 -2.4981 32 1 1.6768 -0.2075 -2.1392 33 1 1.6767 -1.7489 -1.2493 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082834458.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:37 Heat of formation + Delta-G solvation = -72.351269 kcal Electronic energy + Delta-G solvation = -13117.551596 eV Core-core repulsion = 10949.346152 eV Total energy + Delta-G solvation = -2168.205444 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.71239 -35.63673 -33.11914 -31.76568 -29.48291 -26.38106 -25.78836 -24.39589 -20.86982 -20.20926 -19.34612 -17.36660 -15.27694 -14.60500 -14.55989 -14.13164 -13.89010 -13.68758 -12.58132 -12.24889 -12.22702 -11.96507 -11.77361 -11.59526 -11.23922 -11.17933 -10.83459 -10.49928 -10.36535 -10.30409 -10.13664 -10.09200 -9.55621 -9.24618 -8.94318 -7.89008 -5.88249 -3.50694 3.34868 3.36626 3.39802 4.35158 4.96304 5.03617 5.14686 5.38250 5.44274 5.50335 5.65166 5.81794 5.87311 5.89595 6.02478 6.05264 6.09311 6.15858 6.22233 6.25807 6.28676 6.36539 6.48248 6.61392 6.76998 6.79403 6.96505 7.09510 7.15313 7.53309 8.50208 9.55387 10.26935 11.32998 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.044119 B = 0.009162 C = 0.008110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.497028 B = 3055.352266 C = 3451.687235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 H 0.064 0.936 4 C -0.131 4.131 5 C 0.099 3.901 6 O -0.288 6.288 7 C -0.355 4.355 8 H 0.060 0.940 9 C 0.021 3.979 10 N -0.891 5.891 11 Si 0.922 3.078 12 H -0.279 1.279 13 H -0.284 1.284 14 H -0.279 1.279 15 C -0.107 4.107 16 C -0.090 4.090 17 H 0.065 0.935 18 C -0.144 4.144 19 C -0.105 4.105 20 H 0.052 0.948 21 H 0.052 0.948 22 H 0.047 0.953 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.035 0.965 26 H 0.257 0.743 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.302 4.427 -11.010 12.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 H 0.082 0.918 4 C -0.169 4.169 5 C 0.040 3.960 6 O -0.203 6.203 7 C -0.435 4.435 8 H 0.078 0.922 9 C -0.177 4.177 10 N -0.534 5.534 11 Si 0.749 3.251 12 H -0.205 1.205 13 H -0.209 1.209 14 H -0.205 1.205 15 C -0.145 4.145 16 C -0.109 4.109 17 H 0.084 0.916 18 C -0.201 4.201 19 C -0.143 4.143 20 H 0.071 0.929 21 H 0.071 0.929 22 H 0.066 0.934 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.053 0.947 26 H 0.067 0.933 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.207 4.097 -10.892 12.749 hybrid contribution 0.059 0.772 0.844 1.145 sum -5.149 4.869 -10.049 12.296 Atomic orbital electron populations 1.21812 0.95851 1.01512 1.00945 1.21130 0.94882 0.99482 0.95570 0.91797 1.22124 0.98140 1.00396 0.96210 1.21700 0.91644 0.94874 0.87780 1.85673 1.83565 1.34027 1.17041 1.20820 1.43041 0.90795 0.88803 0.92221 1.24929 0.99089 0.96000 0.97702 1.70007 1.47014 1.09158 1.27235 0.86091 0.78358 0.78972 0.81637 1.20481 1.20916 1.20465 1.21588 1.00532 0.99704 0.92668 1.21106 0.95317 0.99604 0.94831 0.91613 1.21804 1.00897 1.00402 0.97006 1.21644 0.95095 1.00554 0.96988 0.92868 0.92882 0.93359 0.92078 0.92131 0.94689 0.93296 0.91846 0.91989 0.93220 0.92795 0.92780 0.92747 0.92081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.19 37.16 0.34 -1.54 16 2 C -0.09 -1.41 2.72 -90.62 -0.25 -1.65 16 3 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 4 C -0.13 -2.57 4.82 -26.73 -0.13 -2.70 16 5 C 0.10 2.23 2.65 -26.73 -0.07 2.16 16 6 O -0.29 -8.42 9.42 -16.49 -0.16 -8.57 16 7 C -0.36 -10.62 9.77 30.88 0.30 -10.32 16 8 H 0.06 1.69 7.64 -52.49 -0.40 1.29 16 9 C 0.02 0.62 5.49 -17.51 -0.10 0.52 16 10 N -0.89 -28.48 13.67 55.48 0.76 -27.72 16 11 Si 0.92 22.51 29.55 -169.99 -5.02 17.49 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 15 C -0.11 -2.04 4.85 -26.73 -0.13 -2.17 16 16 C -0.09 -1.33 2.72 -90.60 -0.25 -1.58 16 17 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 18 C -0.14 -1.79 9.19 37.16 0.34 -1.45 16 19 C -0.11 -1.46 4.49 -26.70 -0.12 -1.58 16 20 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 21 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 24 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 25 H 0.04 0.79 7.80 -51.93 -0.41 0.38 16 26 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 27 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 267.62 15.07 4.03 4.03 Total: -1.00 -32.34 267.62 -6.30 -38.65 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: -5.86 Total: -3.55 kcal Atomic # 6 Polarization: -20.27 SS G_CDS: -0.05 Total: -20.32 kcal Atomic # 7 Polarization: -28.48 SS G_CDS: 0.76 Total: -27.72 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: -0.16 Total: -8.57 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -32.34 -6.30 -38.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082834458.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.706 kcal (2) G-P(sol) polarization free energy of solvation -32.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds