Wall clock time and date at job start Mon Mar 30 2020 02:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46866 * 2 1 4 4 C 1.52997 * 109.46974 * 119.99774 * 2 1 3 5 5 C 1.52996 * 109.47165 * 180.02562 * 4 2 1 6 6 O 1.42898 * 109.47379 * 180.02562 * 5 4 2 7 7 C 1.34924 * 116.99705 * 269.99873 * 6 5 4 8 8 H 1.07997 * 120.00326 * 359.97438 * 7 6 5 9 9 C 1.38642 * 119.99789 * 179.97438 * 7 6 5 10 10 N 1.31576 * 119.99891 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 119.99765 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47414 * 60.00009 * 11 9 7 13 13 H 1.48503 * 109.46964 * 179.97438 * 11 9 7 14 14 H 1.48507 * 109.47114 * 299.99803 * 11 9 7 15 15 C 1.53002 * 109.46972 * 300.00293 * 5 4 2 16 16 C 1.52997 * 109.47415 * 59.99860 * 15 5 4 17 17 H 1.09000 * 109.47140 * 59.99976 * 16 15 5 18 18 C 1.52999 * 109.47269 * 180.02562 * 16 15 5 19 19 C 1.52999 * 109.47000 * 240.00185 * 2 1 3 20 20 H 1.09000 * 109.46866 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47372 * 300.00408 * 1 2 3 22 22 H 1.09004 * 109.47107 * 60.00109 * 1 2 3 23 23 H 1.09000 * 109.47140 * 60.00393 * 4 2 1 24 24 H 1.09001 * 109.47375 * 300.00376 * 4 2 1 25 25 H 1.08996 * 109.47134 * 59.99508 * 5 4 2 26 26 H 0.97000 * 120.00011 * 180.02562 * 10 9 7 27 27 H 1.09000 * 109.46986 * 299.99742 * 15 5 4 28 28 H 1.09001 * 109.47601 * 180.02562 * 15 5 4 29 29 H 1.09001 * 109.47362 * 180.02562 * 18 16 15 30 30 H 1.09002 * 109.46716 * 299.99747 * 18 16 15 31 31 H 1.09000 * 109.47486 * 59.99665 * 18 16 15 32 32 H 1.08993 * 109.47839 * 60.00073 * 19 2 1 33 33 H 1.09000 * 109.47160 * 299.99635 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7207 1.2496 6 8 4.0463 -1.3948 2.4161 7 6 4.2500 -0.6429 3.5178 8 1 4.0540 0.4188 3.4908 9 6 4.7110 -1.2333 4.6844 10 7 4.9503 -2.5267 4.7171 11 14 4.9923 -0.1924 6.2098 12 1 3.7157 0.4501 6.6131 13 1 5.4821 -1.0555 7.3145 14 1 6.0023 0.8555 5.9147 15 6 4.0805 -1.4415 0.0004 16 6 3.5705 -0.7204 -1.2489 17 1 3.9335 0.3074 -1.2487 18 6 4.0805 -1.4416 -2.4981 19 6 2.0400 -0.7212 -1.2493 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.6767 -1.7489 1.2493 24 1 1.6766 -0.2074 2.1392 25 1 3.9329 0.3071 1.2497 26 1 5.2725 -2.9398 5.5335 27 1 3.7175 -2.4693 0.0002 28 1 5.1705 -1.4416 0.0007 29 1 3.7176 -0.9276 -3.3881 30 1 5.1706 -1.4416 -2.4981 31 1 3.7173 -2.4693 -2.4981 32 1 1.6768 -0.2075 -2.1392 33 1 1.6767 -1.7489 -1.2493 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082834458.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:37 Heat of formation + Delta-G solvation = -92.358937 kcal Electronic energy + Delta-G solvation = -13118.419194 eV Core-core repulsion = 10949.346152 eV Total energy + Delta-G solvation = -2169.073042 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.21723 -37.56441 -34.34284 -33.95326 -31.16684 -27.46027 -27.19087 -26.62354 -22.48092 -21.46614 -20.79790 -19.51490 -17.34153 -16.08731 -15.93991 -15.85525 -15.50450 -15.14751 -14.22769 -13.67709 -13.61328 -13.39379 -13.19981 -13.11881 -12.74355 -12.62739 -12.57155 -12.22309 -12.04484 -11.64903 -11.55377 -11.45372 -11.15574 -11.05257 -10.81755 -10.07602 -8.16805 -5.85231 1.36968 1.45086 1.52058 2.32589 3.15292 3.53187 3.77472 3.87841 4.15092 4.18980 4.32397 4.46347 4.48481 4.63905 4.70598 4.78121 4.83434 4.89016 4.94103 5.04815 5.09685 5.13406 5.18750 5.25957 5.28925 5.41033 5.43134 5.50531 5.52818 5.63616 6.22230 7.26081 8.10490 9.08226 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.044119 B = 0.009162 C = 0.008110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.497028 B = 3055.352266 C = 3451.687235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.087 4.087 3 H 0.069 0.931 4 C -0.122 4.122 5 C 0.086 3.914 6 O -0.334 6.334 7 C -0.370 4.370 8 H 0.067 0.933 9 C -0.046 4.046 10 N -0.941 5.941 11 Si 1.003 2.997 12 H -0.265 1.265 13 H -0.278 1.278 14 H -0.264 1.264 15 C -0.102 4.102 16 C -0.084 4.084 17 H 0.071 0.929 18 C -0.140 4.140 19 C -0.101 4.101 20 H 0.052 0.948 21 H 0.048 0.952 22 H 0.076 0.924 23 H 0.046 0.954 24 H 0.038 0.962 25 H 0.030 0.970 26 H 0.260 0.740 27 H 0.051 0.949 28 H 0.046 0.954 29 H 0.076 0.924 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.089 0.911 33 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.119 6.001 -12.200 14.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.105 4.105 3 H 0.087 0.913 4 C -0.160 4.160 5 C 0.028 3.972 6 O -0.249 6.249 7 C -0.449 4.449 8 H 0.085 0.915 9 C -0.238 4.238 10 N -0.587 5.587 11 Si 0.825 3.175 12 H -0.190 1.190 13 H -0.203 1.203 14 H -0.189 1.189 15 C -0.140 4.140 16 C -0.103 4.103 17 H 0.089 0.911 18 C -0.197 4.197 19 C -0.139 4.139 20 H 0.071 0.929 21 H 0.067 0.933 22 H 0.095 0.905 23 H 0.065 0.935 24 H 0.057 0.943 25 H 0.048 0.952 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.095 0.905 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.107 0.893 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.038 5.687 -12.115 14.683 hybrid contribution 0.307 0.271 1.149 1.220 sum -5.732 5.958 -10.966 13.733 Atomic orbital electron populations 1.21779 0.93790 1.01954 1.02207 1.21112 0.96576 0.99103 0.93732 0.91295 1.22006 0.95932 1.00003 0.98100 1.22106 0.93567 0.94600 0.86898 1.85600 1.84489 1.36215 1.18642 1.21289 1.42789 0.91296 0.89551 0.91488 1.26216 0.98580 0.97561 1.01490 1.70191 1.48443 1.11529 1.28503 0.84867 0.79000 0.77238 0.76424 1.18959 1.20282 1.18870 1.21589 0.99622 0.99338 0.93421 1.21098 0.96244 0.99487 0.93429 0.91057 1.21771 1.00901 1.00441 0.96566 1.21649 0.94010 1.00791 0.97405 0.92877 0.93266 0.90486 0.93497 0.94282 0.95207 0.93165 0.93050 0.93482 0.90476 0.92911 0.92745 0.89271 0.92194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 9.19 71.98 0.66 -2.65 16 2 C -0.09 -2.49 2.72 -10.79 -0.03 -2.52 16 3 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 4 C -0.12 -4.90 4.82 30.59 0.15 -4.75 16 5 C 0.09 4.00 2.65 30.59 0.08 4.08 16 6 O -0.33 -20.36 9.42 -81.93 -0.77 -21.13 16 7 C -0.37 -22.79 9.77 67.92 0.66 -22.13 16 8 H 0.07 3.87 7.64 -2.91 -0.02 3.85 16 9 C -0.05 -2.81 5.49 84.83 0.47 -2.34 16 10 N -0.94 -61.99 13.67 21.61 0.30 -61.70 16 11 Si 1.00 46.56 29.55 68.60 2.03 48.59 16 12 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 13 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 14 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 15 C -0.10 -3.95 4.85 30.59 0.15 -3.80 16 16 C -0.08 -2.33 2.72 -10.78 -0.03 -2.36 16 17 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 18 C -0.14 -3.11 9.19 71.98 0.66 -2.45 16 19 C -0.10 -2.52 4.49 30.61 0.14 -2.38 16 20 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 21 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 22 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 23 H 0.05 1.96 8.14 -2.39 -0.02 1.95 16 24 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.03 1.38 7.80 -2.39 -0.02 1.36 16 26 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 27 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -72.17 267.62 5.50 -66.67 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: 1.04 Total: 8.85 kcal Atomic # 6 Polarization: -44.20 SS G_CDS: 2.91 Total: -41.29 kcal Atomic # 7 Polarization: -61.99 SS G_CDS: 0.30 Total: -61.70 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -0.77 Total: -21.13 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Total: -72.17 5.50 -66.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082834458.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.687 kcal (2) G-P(sol) polarization free energy of solvation -72.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds