Wall clock time and date at job start Mon Mar 30 2020 02:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08992 * 109.47280 * 2 1 4 4 C 1.53002 * 109.46978 * 119.99927 * 2 1 3 5 5 C 1.52997 * 109.46978 * 180.02562 * 4 2 1 6 6 C 1.53006 * 109.47164 * 299.99874 * 5 4 2 7 7 H 1.08996 * 109.46884 * 180.02562 * 6 5 4 8 8 O 1.42906 * 109.46748 * 299.99818 * 6 5 4 9 9 C 1.34920 * 117.00418 * 269.99843 * 8 6 5 10 10 H 1.08008 * 119.99819 * 0.02562 * 9 8 6 11 11 C 1.38631 * 120.00292 * 180.02562 * 9 8 6 12 12 N 1.31584 * 119.99956 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00002 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47598 * 359.97438 * 13 11 9 15 15 H 1.48507 * 109.47381 * 119.99923 * 13 11 9 16 16 H 1.48503 * 109.47097 * 239.99918 * 13 11 9 17 17 C 1.52997 * 109.47127 * 59.99836 * 6 5 4 18 18 C 1.52996 * 109.46975 * 239.99465 * 2 1 3 19 19 H 1.09001 * 109.47372 * 300.00372 * 18 2 1 20 20 C 1.53001 * 109.47302 * 60.00059 * 18 2 1 21 21 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47045 * 300.00240 * 1 2 3 23 23 H 1.09000 * 109.47140 * 60.00147 * 1 2 3 24 24 H 1.09002 * 109.47097 * 299.99801 * 4 2 1 25 25 H 1.09001 * 109.47142 * 59.99766 * 4 2 1 26 26 H 1.09001 * 109.47375 * 59.99908 * 5 4 2 27 27 H 1.09000 * 109.47140 * 179.97438 * 5 4 2 28 28 H 0.97000 * 119.99693 * 180.02562 * 12 11 9 29 29 H 1.09002 * 109.47153 * 180.02562 * 17 6 5 30 30 H 1.09001 * 109.46832 * 60.00321 * 17 6 5 31 31 H 1.09002 * 109.47508 * 179.97438 * 20 18 2 32 32 H 1.09000 * 109.47437 * 300.00386 * 20 18 2 33 33 H 1.09001 * 109.47109 * 59.99598 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5699 -0.7207 1.2496 6 6 4.0805 -1.4416 0.0003 7 1 5.1704 -1.4416 0.0008 8 8 3.6046 -2.7891 0.0002 9 6 4.3821 -3.7135 0.6013 10 1 5.3175 -3.4200 1.0548 11 6 3.9806 -5.0399 0.6370 12 7 2.8409 -5.3973 0.0850 13 14 5.0569 -6.3195 1.4698 14 1 6.2763 -5.6657 2.0089 15 1 4.3025 -6.9536 2.5808 16 1 5.4477 -7.3567 0.4815 17 6 3.5704 -0.7205 -1.2489 18 6 2.0399 -0.7214 -1.2492 19 1 1.6765 -1.7490 -1.2491 20 6 1.5299 -0.0002 -2.4985 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.6766 -0.2074 2.1393 25 1 1.6766 -1.7489 1.2493 26 1 3.9329 0.3071 1.2498 27 1 3.9332 -1.2341 2.1398 28 1 2.5598 -6.3254 0.1103 29 1 3.9338 -1.2343 -2.1389 30 1 3.9335 0.3073 -1.2487 31 1 1.8936 -0.5139 -3.3885 32 1 0.4399 -0.0001 -2.4985 33 1 1.8932 1.0274 -2.4986 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082840709.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:13 Heat of formation + Delta-G solvation = -87.366467 kcal Electronic energy + Delta-G solvation = -13436.219093 eV Core-core repulsion = 11267.362541 eV Total energy + Delta-G solvation = -2168.856552 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.28811 -37.40875 -34.06517 -32.99594 -32.22917 -28.09355 -26.61537 -26.13781 -22.69487 -21.61499 -20.54058 -19.37265 -17.18080 -16.23537 -15.88940 -15.64169 -15.20954 -15.02092 -14.23320 -14.21294 -13.64042 -13.26320 -12.93273 -12.85160 -12.63957 -12.58032 -12.46100 -12.32549 -12.01901 -11.80746 -11.66494 -11.36112 -11.03573 -10.74712 -10.58228 -10.02362 -8.13420 -5.79519 1.37446 1.42480 1.52841 2.34048 3.19092 3.72606 3.88418 3.92554 4.14388 4.29254 4.37304 4.51659 4.60036 4.66326 4.75933 4.77687 4.88121 5.01151 5.03780 5.07554 5.10752 5.16819 5.21643 5.24345 5.31322 5.46424 5.52772 5.63011 5.64614 5.83397 6.25666 7.30548 8.17231 9.11741 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.047581 B = 0.009941 C = 0.009847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.324886 B = 2816.026842 C = 2842.810269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.076 4.076 3 H 0.088 0.912 4 C -0.103 4.103 5 C -0.129 4.129 6 C 0.078 3.922 7 H 0.028 0.972 8 O -0.316 6.316 9 C -0.365 4.365 10 H 0.065 0.935 11 C -0.044 4.044 12 N -0.939 5.939 13 Si 0.997 3.003 14 H -0.259 1.259 15 H -0.278 1.278 16 H -0.277 1.277 17 C -0.100 4.100 18 C -0.082 4.082 19 H 0.031 0.969 20 C -0.139 4.139 21 H 0.030 0.970 22 H 0.064 0.936 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.026 0.974 26 H 0.086 0.914 27 H 0.038 0.962 28 H 0.257 0.743 29 H 0.045 0.955 30 H 0.094 0.906 31 H 0.045 0.955 32 H 0.063 0.937 33 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.089 12.094 -0.486 12.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.094 4.094 3 H 0.106 0.894 4 C -0.140 4.140 5 C -0.167 4.167 6 C 0.020 3.980 7 H 0.046 0.954 8 O -0.231 6.231 9 C -0.444 4.444 10 H 0.082 0.918 11 C -0.237 4.237 12 N -0.585 5.585 13 Si 0.820 3.180 14 H -0.183 1.183 15 H -0.204 1.204 16 H -0.203 1.203 17 C -0.137 4.137 18 C -0.101 4.101 19 H 0.050 0.950 20 C -0.196 4.196 21 H 0.050 0.950 22 H 0.083 0.917 23 H 0.092 0.908 24 H 0.087 0.913 25 H 0.045 0.955 26 H 0.105 0.895 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.113 0.887 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.342 11.934 -0.597 12.024 hybrid contribution 0.676 -1.153 0.495 1.425 sum -0.667 10.780 -0.102 10.801 Atomic orbital electron populations 1.21851 0.94750 1.00874 1.02570 1.21086 0.95940 0.99115 0.93236 0.89373 1.21382 0.95053 0.99326 0.98272 1.21944 0.96933 1.00197 0.97638 1.22160 0.95559 0.84680 0.95636 0.95379 1.85649 1.46692 1.14073 1.76704 1.21355 1.01673 0.88836 1.32557 0.91770 1.26078 0.98629 0.98980 0.99980 1.70205 1.23243 1.17211 1.47844 0.84809 0.77740 0.77810 0.77633 1.18320 1.20366 1.20291 1.21633 0.96392 0.99825 0.95873 1.20988 0.94639 0.98505 0.95945 0.95006 1.21831 1.01299 1.00534 0.95892 0.95033 0.91663 0.90791 0.91284 0.95538 0.89541 0.94357 0.93420 0.93654 0.88728 0.93596 0.91802 0.90832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.92 8.84 71.98 0.64 -3.28 16 2 C -0.08 -2.33 2.25 -10.80 -0.02 -2.36 16 3 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 4 C -0.10 -3.82 5.06 30.59 0.15 -3.66 16 5 C -0.13 -4.95 5.63 30.60 0.17 -4.78 16 6 C 0.08 3.48 2.96 30.60 0.09 3.58 16 7 H 0.03 1.26 7.80 -2.39 -0.02 1.24 16 8 O -0.32 -18.45 8.08 -81.89 -0.66 -19.12 16 9 C -0.36 -22.05 9.77 67.91 0.66 -21.39 16 10 H 0.06 3.68 7.64 -2.91 -0.02 3.65 16 11 C -0.04 -2.68 5.49 84.82 0.47 -2.21 16 12 N -0.94 -61.28 13.68 21.61 0.30 -60.99 16 13 Si 1.00 46.62 29.55 68.60 2.03 48.65 16 14 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 15 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 16 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 17 C -0.10 -3.67 4.95 30.61 0.15 -3.52 16 18 C -0.08 -2.91 2.10 -10.78 -0.02 -2.94 16 19 H 0.03 1.47 7.68 -2.39 -0.02 1.45 16 20 C -0.14 -3.74 8.84 71.98 0.64 -3.10 16 21 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 22 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 23 H 0.07 1.69 6.43 -2.39 -0.02 1.67 16 24 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 25 H 0.03 1.24 7.68 -2.39 -0.02 1.22 16 26 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 27 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 29 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 31 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.06 1.57 6.43 -2.39 -0.02 1.56 16 33 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -71.10 261.92 5.63 -65.46 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: 1.05 Total: 9.66 kcal Atomic # 6 Polarization: -46.59 SS G_CDS: 2.92 Total: -43.66 kcal Atomic # 7 Polarization: -61.28 SS G_CDS: 0.30 Total: -60.99 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -0.66 Total: -19.12 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -71.10 5.63 -65.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082840709.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.902 kcal (2) G-P(sol) polarization free energy of solvation -71.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds