Wall clock time and date at job start Mon Mar 30 2020 02:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00023 * 2 1 4 4 H 1.48497 * 109.47205 * 274.25414 * 3 2 1 5 5 H 1.48496 * 109.47468 * 34.26004 * 3 2 1 6 6 H 1.48505 * 109.47075 * 154.25576 * 3 2 1 7 7 C 1.37879 * 120.00172 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99741 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00453 * 180.29457 * 7 2 1 10 10 C 1.52995 * 115.55145 * 94.43560 * 9 7 2 11 11 N 1.46901 * 109.47336 * 304.98740 * 10 9 7 12 12 C 1.46902 * 110.99927 * 185.66354 * 11 10 9 13 13 C 1.53004 * 109.47125 * 184.29952 * 12 11 10 14 14 C 1.52991 * 109.47107 * 184.85919 * 13 12 11 15 15 N 1.46899 * 109.47063 * 179.97438 * 14 13 12 16 16 C 1.53008 * 117.49605 * 308.77003 * 9 7 2 17 17 C 1.53000 * 117.49717 * 240.11062 * 9 7 2 18 18 H 0.97005 * 120.00308 * 0.02562 * 1 2 3 19 19 H 1.08997 * 109.47349 * 64.99309 * 10 9 7 20 20 H 1.09001 * 109.47154 * 184.98948 * 10 9 7 21 21 H 1.00897 * 110.99949 * 61.71548 * 11 10 9 22 22 H 1.08997 * 109.47210 * 304.30192 * 12 11 10 23 23 H 1.09002 * 109.47251 * 64.30164 * 12 11 10 24 24 H 1.09002 * 109.46786 * 304.85835 * 13 12 11 25 25 H 1.08995 * 109.46843 * 64.85710 * 13 12 11 26 26 H 1.09002 * 109.47229 * 299.99644 * 14 13 12 27 27 H 1.08997 * 109.47646 * 59.99406 * 14 13 12 28 28 H 1.00904 * 111.00123 * 56.04321 * 15 14 13 29 29 H 1.00902 * 111.00413 * 179.97438 * 15 14 13 30 30 H 1.09000 * 117.49507 * 359.97438 * 16 9 7 31 31 H 1.08997 * 117.50070 * 145.02119 * 16 9 7 32 32 H 1.09007 * 117.49514 * 214.97301 * 17 9 7 33 33 H 1.09000 * 117.50152 * 359.97438 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4067 2.0984 -1.3962 5 1 1.4946 2.6250 0.7881 6 1 3.5888 1.4158 0.6081 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0072 10 6 4.1652 -1.3038 1.3861 11 7 3.6561 -0.2350 2.2559 12 6 4.3597 -0.2258 3.5454 13 6 3.7321 0.8269 4.4613 14 6 4.5392 0.9216 5.7576 15 7 3.9369 1.9327 6.6367 16 6 4.2226 -0.3420 -1.0460 17 6 4.2231 -1.8680 -1.1677 18 1 -0.4851 0.8401 -0.0004 19 1 3.9280 -2.2731 1.8246 20 1 5.2460 -1.2058 1.2846 21 1 2.6596 -0.3206 2.3884 22 1 4.2778 -1.2079 4.0111 23 1 5.4109 0.0133 3.3841 24 1 3.7363 1.7944 3.9592 25 1 2.7057 0.5419 4.6924 26 1 4.5350 -0.0458 6.2597 27 1 5.5656 1.2065 5.5265 28 1 2.9653 1.7256 6.8135 29 1 4.4520 2.0140 7.5005 30 1 3.6004 0.2182 -1.7439 31 1 5.1564 0.1400 -0.7567 32 1 5.1573 -2.3891 -0.9583 33 1 3.6013 -2.3116 -1.9453 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083854123.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:24 Heat of formation + Delta-G solvation = 20.186273 kcal Electronic energy + Delta-G solvation = -12920.138498 eV Core-core repulsion = 10788.238534 eV Total energy + Delta-G solvation = -2131.899964 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -37.48848 -36.07746 -33.87882 -31.97807 -29.80980 -25.93542 -24.79748 -22.50636 -21.47508 -21.06153 -18.74490 -16.26028 -15.91941 -15.57358 -14.76074 -14.53060 -14.22080 -13.76542 -13.50922 -12.59423 -12.44112 -11.94488 -11.83388 -11.34462 -10.99925 -10.95471 -10.61246 -10.45321 -10.20132 -9.83148 -9.35836 -8.92894 -8.77769 -8.51189 -8.38581 -7.37909 -5.99939 -4.06911 3.51148 3.63050 3.92269 4.41141 4.68008 4.81717 5.09561 5.18287 5.31982 5.45056 5.57093 5.70717 5.81793 5.90771 5.96246 6.16269 6.25406 6.39374 6.43876 6.49194 6.58552 6.60774 6.82391 7.04508 7.13406 7.20983 7.33202 7.83501 7.93054 8.23218 8.57644 8.99267 9.64092 11.09770 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.033124 B = 0.010923 C = 0.009399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.104403 B = 2562.899508 C = 2978.341021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.080 3.920 3 Si 0.873 3.127 4 H -0.298 1.298 5 H -0.304 1.304 6 H -0.207 1.207 7 C -0.496 4.496 8 H 0.072 0.928 9 C 0.008 3.992 10 C 0.103 3.897 11 N -0.677 5.677 12 C 0.060 3.940 13 C -0.120 4.120 14 C 0.064 3.936 15 N -0.853 5.853 16 C -0.194 4.194 17 C -0.188 4.188 18 H 0.263 0.737 19 H 0.021 0.979 20 H 0.046 0.954 21 H 0.354 0.646 22 H 0.018 0.982 23 H 0.062 0.938 24 H 0.079 0.921 25 H 0.059 0.941 26 H 0.023 0.977 27 H 0.070 0.930 28 H 0.341 0.659 29 H 0.338 0.662 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.046 0.672 9.005 12.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.122 4.122 3 Si 0.701 3.299 4 H -0.226 1.226 5 H -0.232 1.232 6 H -0.129 1.129 7 C -0.533 4.533 8 H 0.090 0.910 9 C 0.007 3.993 10 C -0.026 4.026 11 N -0.311 5.311 12 C -0.070 4.070 13 C -0.159 4.159 14 C -0.067 4.067 15 N -0.382 5.382 16 C -0.231 4.231 17 C -0.226 4.226 18 H 0.072 0.928 19 H 0.039 0.961 20 H 0.064 0.936 21 H 0.175 0.825 22 H 0.037 0.963 23 H 0.081 0.919 24 H 0.097 0.903 25 H 0.077 0.923 26 H 0.041 0.959 27 H 0.089 0.911 28 H 0.153 0.847 29 H 0.149 0.851 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.464 1.764 8.161 12.620 hybrid contribution -0.302 -0.686 0.935 1.199 sum 9.161 1.078 9.096 12.955 Atomic orbital electron populations 1.69932 1.06781 1.27236 1.50070 1.25030 0.94533 0.99576 0.93110 0.86985 0.84135 0.81788 0.76951 1.22620 1.23232 1.12886 1.20250 0.86599 0.94272 1.52225 0.91042 1.19386 0.94725 0.98960 0.86245 1.21445 0.96344 0.90975 0.93860 1.60581 1.10186 1.48840 1.11445 1.21865 0.98663 0.96159 0.90307 1.21580 0.98874 1.00939 0.94467 1.21754 0.98882 0.92364 0.93681 1.58703 1.07193 1.51983 1.20305 1.22869 1.01583 0.92987 1.05627 1.22897 1.01101 0.94609 1.03988 0.92774 0.96095 0.93572 0.82507 0.96348 0.91904 0.90276 0.92252 0.95875 0.91131 0.84718 0.85059 0.89975 0.90847 0.91298 0.89741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.64 13.96 55.43 0.77 -26.86 16 2 C 0.08 2.30 5.13 -17.82 -0.09 2.21 16 3 Si 0.87 22.23 23.18 -169.99 -3.94 18.29 16 4 H -0.30 -7.75 7.08 56.52 0.40 -7.35 16 5 H -0.30 -7.96 7.11 56.52 0.40 -7.56 16 6 H -0.21 -4.98 5.17 56.52 0.29 -4.69 16 7 C -0.50 -13.81 8.73 -34.44 -0.30 -14.11 16 8 H 0.07 2.19 8.06 -52.48 -0.42 1.76 16 9 C 0.01 0.19 1.37 -155.66 -0.21 -0.03 16 10 C 0.10 2.12 5.61 -3.83 -0.02 2.09 16 11 N -0.68 -13.66 3.86 -113.78 -0.44 -14.10 16 12 C 0.06 0.97 5.69 -3.82 -0.02 0.95 16 13 C -0.12 -1.78 5.69 -26.73 -0.15 -1.93 16 14 C 0.06 0.77 6.79 -3.83 -0.03 0.74 16 15 N -0.85 -9.42 9.62 -10.37 -0.10 -9.52 16 16 C -0.19 -4.28 7.06 -26.69 -0.19 -4.47 16 17 C -0.19 -3.93 9.96 -26.69 -0.27 -4.19 16 18 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 19 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 20 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 21 H 0.35 7.83 7.24 -39.29 -0.28 7.55 16 22 H 0.02 0.28 8.13 -51.93 -0.42 -0.14 16 23 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 24 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 25 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.34 3.48 8.99 -39.29 -0.35 3.12 16 29 H 0.34 2.93 9.08 -39.29 -0.36 2.58 16 30 H 0.08 1.95 6.32 -51.93 -0.33 1.62 16 31 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 32 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 LS Contribution 263.49 15.07 3.97 3.97 Total: -1.00 -30.24 263.49 -6.65 -36.89 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -5.64 Total: 10.06 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: -1.28 Total: -18.74 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: 0.23 Total: -50.47 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -3.94 Total: 18.29 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -30.24 -6.65 -36.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854123.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.079 kcal (2) G-P(sol) polarization free energy of solvation -30.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds