Wall clock time and date at job start Mon Mar 30 2020 02:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46538 * 2 1 4 4 C 1.52996 * 109.46852 * 119.99465 * 2 1 3 5 5 O 1.42902 * 109.46924 * 175.04811 * 4 2 1 6 6 C 1.42902 * 114.00195 * 185.08828 * 5 4 2 7 7 C 1.52997 * 109.47214 * 184.78406 * 6 5 4 8 8 C 1.50698 * 115.55293 * 305.36759 * 7 6 5 9 9 H 1.07997 * 120.00028 * 279.09112 * 8 7 6 10 10 C 1.37876 * 119.99918 * 98.81130 * 8 7 6 11 11 N 1.31515 * 119.99963 * 175.34152 * 10 8 7 12 12 Si 1.86801 * 120.00067 * 355.33941 * 10 8 7 13 13 H 1.48505 * 109.46835 * 94.88292 * 12 10 8 14 14 H 1.48499 * 109.46953 * 214.88252 * 12 10 8 15 15 H 1.48500 * 109.47209 * 334.88275 * 12 10 8 16 16 C 1.53000 * 117.51719 * 91.07090 * 7 6 5 17 17 C 1.53000 * 60.00007 * 107.47997 * 16 7 6 18 18 H 1.08999 * 109.47396 * 300.00033 * 1 2 3 19 19 H 1.09000 * 109.46860 * 60.00757 * 1 2 3 20 20 H 1.09000 * 109.46415 * 179.97438 * 1 2 3 21 21 H 1.08992 * 109.47545 * 239.99594 * 2 1 3 22 22 H 1.09004 * 109.46741 * 185.08063 * 3 2 1 23 23 H 1.08997 * 109.47126 * 305.07583 * 3 2 1 24 24 H 1.08997 * 109.47295 * 65.08710 * 3 2 1 25 25 H 1.09002 * 109.47399 * 55.05145 * 4 2 1 26 26 H 1.08999 * 109.47594 * 295.04401 * 4 2 1 27 27 H 1.09005 * 109.46853 * 64.78299 * 6 5 4 28 28 H 1.09003 * 109.46938 * 304.78513 * 6 5 4 29 29 H 0.97000 * 120.00022 * 179.97438 * 11 10 8 30 30 H 1.08998 * 117.49728 * 214.97224 * 16 7 6 31 31 H 1.09001 * 117.49996 * 359.97438 * 16 7 6 32 32 H 1.09003 * 117.49675 * 252.50323 * 17 16 7 33 33 H 1.09000 * 117.51852 * 107.48490 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 8 3.4642 -0.8227 1.1926 6 6 4.0357 -1.5830 2.2592 7 6 5.5617 -1.5256 2.1658 8 6 6.1486 -1.9508 0.8445 9 1 6.2743 -3.0001 0.6222 10 6 6.5197 -1.0003 -0.0828 11 7 7.1155 -1.3659 -1.1967 12 14 6.1760 0.8067 0.2431 13 1 7.3764 1.4374 0.8485 14 1 5.8512 1.4872 -1.0362 15 1 5.0273 0.9317 1.1759 16 6 6.2750 -0.4073 2.9285 17 6 6.3595 -1.8502 3.4303 18 1 -0.3634 0.5138 0.8900 19 1 -0.3633 0.5137 -0.8901 20 1 -0.3632 -1.0277 -0.0005 21 1 1.8934 -0.5138 -0.8899 22 1 3.1261 1.4439 -0.0910 23 1 1.6042 1.9819 -0.8410 24 1 1.7528 1.9294 0.9320 25 1 1.6060 -1.7200 1.2948 26 1 1.7509 -0.1586 2.1370 27 1 3.7057 -2.6192 2.1841 28 1 3.7142 -1.1676 3.2143 29 1 7.3763 -0.6973 -1.8493 30 1 7.1687 0.0208 2.4745 31 1 5.6571 0.2880 3.4966 32 1 5.7973 -2.1043 4.3289 33 1 7.3087 -2.3717 3.3066 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083862484.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:13 Heat of formation + Delta-G solvation = -53.668713 kcal Electronic energy + Delta-G solvation = -13277.693925 eV Core-core repulsion = 11110.298617 eV Total energy + Delta-G solvation = -2167.395308 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.56304 -37.97431 -35.56083 -34.16517 -28.68251 -28.02805 -27.34133 -26.00537 -23.34029 -21.30277 -20.69115 -18.40852 -17.42494 -16.97644 -16.37965 -16.08170 -15.49275 -14.89510 -14.69054 -14.28407 -13.83191 -13.24207 -13.14493 -12.98528 -12.86636 -12.58052 -12.13365 -12.03728 -11.74349 -11.68048 -11.52338 -11.32179 -10.91261 -10.61035 -10.46321 -10.00917 -8.25946 -6.31382 1.34086 1.43628 1.68676 2.47499 2.82643 3.13116 3.39986 3.94943 4.01834 4.16596 4.28895 4.32651 4.50687 4.55013 4.59499 4.66629 4.77791 4.83089 4.84023 4.85089 4.98478 5.05290 5.07302 5.22555 5.33577 5.42629 5.44212 5.47633 5.75295 6.28396 6.60153 6.80449 7.40694 8.89370 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.031719 B = 0.013869 C = 0.011662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.542541 B = 2018.435810 C = 2400.450391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.101 4.101 3 C -0.144 4.144 4 C 0.055 3.945 5 O -0.392 6.392 6 C 0.109 3.891 7 C -0.031 4.031 8 C -0.481 4.481 9 H 0.028 0.972 10 C 0.027 3.973 11 N -0.956 5.956 12 Si 0.945 3.055 13 H -0.289 1.289 14 H -0.313 1.313 15 H -0.207 1.207 16 C -0.198 4.198 17 C -0.155 4.155 18 H 0.068 0.932 19 H 0.068 0.932 20 H 0.061 0.939 21 H 0.053 0.947 22 H 0.027 0.973 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.050 0.950 26 H 0.058 0.942 27 H 0.040 0.960 28 H 0.056 0.944 29 H 0.261 0.739 30 H 0.066 0.934 31 H 0.104 0.896 32 H 0.114 0.886 33 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.701 4.979 7.797 15.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.119 4.119 3 C -0.201 4.201 4 C -0.021 4.021 5 O -0.311 6.311 6 C 0.032 3.968 7 C -0.032 4.032 8 C -0.518 4.518 9 H 0.046 0.954 10 C -0.170 4.170 11 N -0.596 5.596 12 Si 0.772 3.228 13 H -0.217 1.217 14 H -0.242 1.242 15 H -0.129 1.129 16 C -0.235 4.235 17 C -0.193 4.193 18 H 0.087 0.913 19 H 0.087 0.913 20 H 0.080 0.920 21 H 0.072 0.928 22 H 0.046 0.954 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.058 0.942 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.122 0.878 32 H 0.132 0.868 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.538 5.107 7.513 15.483 hybrid contribution 0.437 0.322 -0.471 0.718 sum -12.102 5.429 7.042 15.017 Atomic orbital electron populations 1.21704 0.91764 1.02568 1.03004 1.21144 0.97331 0.96298 0.97170 1.21809 1.00042 0.95916 1.02379 1.22732 0.81714 0.99376 0.98287 1.88100 1.19914 1.73400 1.49711 1.21989 0.92237 0.93886 0.88649 1.19378 0.90763 1.01031 0.92020 1.20368 1.39567 0.92591 0.99294 0.95354 1.25765 0.93246 1.03762 0.94198 1.70063 1.42719 1.35760 1.11077 0.85892 0.80088 0.79414 0.77383 1.21676 1.24184 1.12886 1.22960 1.02844 0.92376 1.05337 1.22950 1.01839 0.97028 0.97435 0.91254 0.91308 0.91979 0.92826 0.95376 0.91546 0.91528 0.93212 0.92397 0.94191 0.92582 0.93013 0.91581 0.87785 0.86814 0.90235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 9.19 71.98 0.66 -2.07 16 2 C -0.10 -2.97 3.16 -10.79 -0.03 -3.00 16 3 C -0.14 -4.30 9.03 71.98 0.65 -3.65 16 4 C 0.06 1.75 5.32 71.98 0.38 2.14 16 5 O -0.39 -16.66 7.36 -148.98 -1.10 -17.75 16 6 C 0.11 4.36 5.83 71.98 0.42 4.78 16 7 C -0.03 -1.45 1.39 -52.93 -0.07 -1.52 16 8 C -0.48 -28.57 9.21 25.60 0.24 -28.34 16 9 H 0.03 1.88 8.06 -2.91 -0.02 1.85 16 10 C 0.03 1.65 5.46 84.65 0.46 2.12 16 11 N -0.96 -63.02 13.96 21.45 0.30 -62.72 16 12 Si 0.94 48.63 22.88 68.60 1.57 50.20 16 13 H -0.29 -14.45 6.98 99.48 0.69 -13.76 16 14 H -0.31 -16.48 7.11 99.48 0.71 -15.78 16 15 H -0.21 -9.74 5.19 99.48 0.52 -9.22 16 16 C -0.20 -8.24 7.10 30.59 0.22 -8.03 16 17 C -0.16 -6.00 9.95 30.59 0.30 -5.70 16 18 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 19 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 20 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 21 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 22 H 0.03 1.03 7.00 -2.38 -0.02 1.01 16 23 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 28 H 0.06 1.85 8.09 -2.39 -0.02 1.83 16 29 H 0.26 16.30 8.31 -92.71 -0.77 15.53 16 30 H 0.07 3.02 6.07 -2.39 -0.01 3.00 16 31 H 0.10 3.69 8.14 -2.39 -0.02 3.67 16 32 H 0.11 3.45 8.14 -2.39 -0.02 3.43 16 33 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 Total: -1.00 -70.30 264.37 4.84 -65.46 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: 0.84 Total: 8.08 kcal Atomic # 6 Polarization: -46.50 SS G_CDS: 3.23 Total: -43.27 kcal Atomic # 7 Polarization: -63.02 SS G_CDS: 0.30 Total: -62.72 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: -1.10 Total: -17.75 kcal Atomic # 14 Polarization: 48.63 SS G_CDS: 1.57 Total: 50.20 kcal Total: -70.30 4.84 -65.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862484.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.791 kcal (2) G-P(sol) polarization free energy of solvation -70.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds