Wall clock time and date at job start Mon Mar 30 2020 02:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47079 * 2 1 4 4 C 1.53004 * 109.46992 * 240.00502 * 2 1 3 5 5 O 1.42894 * 109.47604 * 120.00549 * 2 1 3 6 6 C 1.42899 * 114.00042 * 64.90870 * 5 2 1 7 7 C 1.53003 * 109.47058 * 185.10653 * 6 5 2 8 8 C 1.50706 * 115.54526 * 305.29274 * 7 6 5 9 9 H 1.07996 * 120.00200 * 275.44055 * 8 7 6 10 10 C 1.37875 * 119.99869 * 95.17258 * 8 7 6 11 11 N 1.31511 * 120.00186 * 175.57942 * 10 8 7 12 12 Si 1.86806 * 119.99971 * 355.58023 * 10 8 7 13 13 H 1.48498 * 109.47072 * 95.00399 * 12 10 8 14 14 H 1.48504 * 109.47001 * 215.00140 * 12 10 8 15 15 H 1.48501 * 109.46822 * 335.00122 * 12 10 8 16 16 C 1.52990 * 117.50440 * 90.96456 * 7 6 5 17 17 C 1.53001 * 117.50086 * 159.62911 * 7 6 5 18 18 H 1.09005 * 109.46925 * 299.99173 * 1 2 3 19 19 H 1.08998 * 109.47856 * 59.99522 * 1 2 3 20 20 H 1.08998 * 109.47263 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.47473 * 184.93931 * 3 2 1 22 22 H 1.08999 * 109.47528 * 304.94271 * 3 2 1 23 23 H 1.09002 * 109.46722 * 64.94426 * 3 2 1 24 24 H 1.08998 * 109.46912 * 299.99964 * 4 2 1 25 25 H 1.09003 * 109.47192 * 59.99986 * 4 2 1 26 26 H 1.08996 * 109.47518 * 179.97438 * 4 2 1 27 27 H 1.09002 * 109.47341 * 65.10316 * 6 5 2 28 28 H 1.09007 * 109.47016 * 305.09947 * 6 5 2 29 29 H 0.96997 * 120.00270 * 179.97438 * 11 10 8 30 30 H 1.08992 * 117.50481 * 215.00431 * 16 7 6 31 31 H 1.09004 * 117.49671 * 0.02712 * 16 7 6 32 32 H 1.08995 * 117.49645 * 359.97056 * 17 7 6 33 33 H 1.08996 * 117.49880 * 144.96800 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0064 -0.6737 1.1666 6 6 1.6782 -2.0638 1.2098 7 6 2.1228 -2.6514 2.5507 8 6 3.5736 -2.4442 2.9020 9 1 4.3224 -3.1272 2.5290 10 6 3.9456 -1.3796 3.6952 11 7 5.1982 -1.2476 4.0736 12 14 2.6704 -0.1246 4.2324 13 1 2.1539 -0.4880 5.5764 14 1 3.2943 1.2218 4.2893 15 1 1.5494 -0.1101 3.2585 16 6 1.1099 -2.6410 3.6972 17 6 1.4661 -3.9575 3.0023 18 1 -0.3633 0.5137 0.8901 19 1 -0.3635 0.5139 -0.8899 20 1 -0.3634 -1.0276 -0.0005 21 1 3.1263 1.4438 -0.0885 22 1 1.6061 1.9813 -0.8424 23 1 1.7507 1.9300 0.9310 24 1 1.6766 -1.7488 -1.2494 25 1 1.6766 -0.2072 -2.1393 26 1 3.1299 -0.7208 -1.2497 27 1 2.1886 -2.5830 0.3985 28 1 0.6008 -2.1865 1.0987 29 1 5.4600 -0.4984 4.6313 30 1 1.4927 -2.4842 4.7056 31 1 0.1265 -2.2159 3.4961 32 1 0.7171 -4.3979 2.3442 33 1 2.0835 -4.6670 3.5531 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083862500.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:14 Heat of formation + Delta-G solvation = -25.812360 kcal Electronic energy + Delta-G solvation = -13589.487508 eV Core-core repulsion = 11423.300143 eV Total energy + Delta-G solvation = -2166.187366 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.55277 -36.42523 -32.55070 -31.89069 -27.45652 -27.09386 -26.17378 -24.81626 -21.61203 -19.46874 -18.83355 -16.33353 -15.92848 -14.81430 -14.65208 -14.34308 -13.58329 -13.21914 -12.80236 -12.48434 -12.31199 -11.91796 -11.69350 -11.45818 -11.41333 -11.03085 -10.86532 -10.54260 -10.32001 -10.10656 -9.89842 -9.28591 -9.02879 -8.74977 -8.38157 -8.17093 -5.93022 -3.96587 3.46840 3.58531 3.82216 4.36039 4.70181 5.07570 5.18697 5.22501 5.38533 5.41583 5.76495 5.78754 5.85107 5.94252 6.02726 6.08034 6.10301 6.15715 6.17540 6.32267 6.40688 6.50265 6.53844 6.63958 6.65641 6.77626 7.13646 7.17001 7.87385 8.21161 8.62464 9.06131 9.73194 11.18155 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.031193 B = 0.016013 C = 0.013538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.428441 B = 1748.211307 C = 2067.685820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.097 3.903 3 C -0.136 4.136 4 C -0.174 4.174 5 O -0.342 6.342 6 C 0.100 3.900 7 C 0.005 3.995 8 C -0.484 4.484 9 H 0.073 0.927 10 C 0.086 3.914 11 N -0.905 5.905 12 Si 0.882 3.118 13 H -0.295 1.295 14 H -0.303 1.303 15 H -0.227 1.227 16 C -0.200 4.200 17 C -0.179 4.179 18 H 0.059 0.941 19 H 0.056 0.944 20 H 0.056 0.944 21 H 0.063 0.937 22 H 0.061 0.939 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.043 0.957 28 H 0.023 0.977 29 H 0.261 0.739 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.517 2.331 -7.929 12.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.057 3.943 3 C -0.193 4.193 4 C -0.232 4.232 5 O -0.261 6.261 6 C 0.023 3.977 7 C 0.004 3.996 8 C -0.521 4.521 9 H 0.091 0.909 10 C -0.116 4.116 11 N -0.543 5.543 12 Si 0.711 3.289 13 H -0.223 1.223 14 H -0.230 1.230 15 H -0.150 1.150 16 C -0.237 4.237 17 C -0.216 4.216 18 H 0.078 0.922 19 H 0.075 0.925 20 H 0.075 0.925 21 H 0.082 0.918 22 H 0.080 0.920 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.061 0.939 28 H 0.041 0.959 29 H 0.071 0.929 30 H 0.104 0.896 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.283 2.535 -7.697 12.323 hybrid contribution -0.705 0.565 0.198 0.925 sum -9.988 3.100 -7.500 12.869 Atomic orbital electron populations 1.22389 0.96881 1.02037 1.01792 1.21412 0.92387 0.93449 0.87068 1.21722 1.01956 0.93974 1.01651 1.22415 1.02446 1.00767 0.97554 1.88307 1.77675 1.21507 1.38649 1.22133 0.95264 0.82037 0.98219 1.19378 0.94547 0.95453 0.90240 1.20118 0.88461 1.12274 1.31234 0.90885 1.24913 0.95140 0.97009 0.94587 1.69921 1.17163 1.30858 1.36322 0.86812 0.83836 0.79843 0.78368 1.22291 1.23034 1.14978 1.22940 0.99521 1.02114 0.99133 1.22875 1.03106 0.91469 1.04162 0.92154 0.92452 0.92477 0.91799 0.92043 0.92169 0.92344 0.92598 0.91573 0.93937 0.95890 0.92911 0.89581 0.90976 0.91153 0.89266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.54 8.39 37.15 0.31 -2.23 16 2 C 0.10 1.65 1.14 -90.62 -0.10 1.55 16 3 C -0.14 -2.12 8.84 37.16 0.33 -1.80 16 4 C -0.17 -2.62 8.09 37.16 0.30 -2.32 16 5 O -0.34 -7.55 6.72 -35.23 -0.24 -7.79 16 6 C 0.10 2.13 4.92 37.16 0.18 2.31 16 7 C 0.00 0.11 1.37 -155.66 -0.21 -0.10 16 8 C -0.48 -14.03 9.21 -34.44 -0.32 -14.35 16 9 H 0.07 2.30 8.06 -52.49 -0.42 1.88 16 10 C 0.09 2.56 5.47 -17.82 -0.10 2.47 16 11 N -0.91 -28.69 13.96 55.43 0.77 -27.92 16 12 Si 0.88 23.21 23.62 -169.99 -4.02 19.19 16 13 H -0.30 -7.69 7.08 56.52 0.40 -7.29 16 14 H -0.30 -8.10 7.11 56.52 0.40 -7.70 16 15 H -0.23 -5.66 5.12 56.52 0.29 -5.37 16 16 C -0.20 -4.45 7.25 -26.70 -0.19 -4.65 16 17 C -0.18 -3.72 9.96 -26.69 -0.27 -3.99 16 18 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 19 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 20 H 0.06 0.82 6.54 -51.93 -0.34 0.48 16 21 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 22 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 24 H 0.06 0.86 6.60 -51.93 -0.34 0.52 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 27 H 0.04 0.88 6.64 -51.93 -0.35 0.53 16 28 H 0.02 0.44 6.27 -51.93 -0.33 0.11 16 29 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 30 H 0.09 2.04 6.55 -51.93 -0.34 1.70 16 31 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 32 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 LS Contribution 258.63 15.07 3.90 3.90 Total: -1.00 -31.62 258.63 -5.24 -36.86 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -5.59 Total: -1.14 kcal Atomic # 6 Polarization: -23.04 SS G_CDS: -0.07 Total: -23.11 kcal Atomic # 7 Polarization: -28.69 SS G_CDS: 0.77 Total: -27.92 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: -0.24 Total: -7.79 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -4.02 Total: 19.19 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -31.62 -5.24 -36.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862500.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.045 kcal (2) G-P(sol) polarization free energy of solvation -31.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds