Wall clock time and date at job start Mon Mar 30 2020 02:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47079 * 2 1 4 4 C 1.53004 * 109.46992 * 240.00502 * 2 1 3 5 5 O 1.42894 * 109.47604 * 120.00549 * 2 1 3 6 6 C 1.42899 * 114.00042 * 64.90870 * 5 2 1 7 7 C 1.53003 * 109.47058 * 185.10653 * 6 5 2 8 8 C 1.50706 * 115.54526 * 305.29274 * 7 6 5 9 9 H 1.07996 * 120.00200 * 275.44055 * 8 7 6 10 10 C 1.37875 * 119.99869 * 95.17258 * 8 7 6 11 11 N 1.31511 * 120.00186 * 175.57942 * 10 8 7 12 12 Si 1.86806 * 119.99971 * 355.58023 * 10 8 7 13 13 H 1.48498 * 109.47072 * 95.00399 * 12 10 8 14 14 H 1.48504 * 109.47001 * 215.00140 * 12 10 8 15 15 H 1.48501 * 109.46822 * 335.00122 * 12 10 8 16 16 C 1.52990 * 117.50440 * 90.96456 * 7 6 5 17 17 C 1.53001 * 117.50086 * 159.62911 * 7 6 5 18 18 H 1.09005 * 109.46925 * 299.99173 * 1 2 3 19 19 H 1.08998 * 109.47856 * 59.99522 * 1 2 3 20 20 H 1.08998 * 109.47263 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.47473 * 184.93931 * 3 2 1 22 22 H 1.08999 * 109.47528 * 304.94271 * 3 2 1 23 23 H 1.09002 * 109.46722 * 64.94426 * 3 2 1 24 24 H 1.08998 * 109.46912 * 299.99964 * 4 2 1 25 25 H 1.09003 * 109.47192 * 59.99986 * 4 2 1 26 26 H 1.08996 * 109.47518 * 179.97438 * 4 2 1 27 27 H 1.09002 * 109.47341 * 65.10316 * 6 5 2 28 28 H 1.09007 * 109.47016 * 305.09947 * 6 5 2 29 29 H 0.96997 * 120.00270 * 179.97438 * 11 10 8 30 30 H 1.08992 * 117.50481 * 215.00431 * 16 7 6 31 31 H 1.09004 * 117.49671 * 0.02712 * 16 7 6 32 32 H 1.08995 * 117.49645 * 359.97056 * 17 7 6 33 33 H 1.08996 * 117.49880 * 144.96800 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0064 -0.6737 1.1666 6 6 1.6782 -2.0638 1.2098 7 6 2.1228 -2.6514 2.5507 8 6 3.5736 -2.4442 2.9020 9 1 4.3224 -3.1272 2.5290 10 6 3.9456 -1.3796 3.6952 11 7 5.1982 -1.2476 4.0736 12 14 2.6704 -0.1246 4.2324 13 1 2.1539 -0.4880 5.5764 14 1 3.2943 1.2218 4.2893 15 1 1.5494 -0.1101 3.2585 16 6 1.1099 -2.6410 3.6972 17 6 1.4661 -3.9575 3.0023 18 1 -0.3633 0.5137 0.8901 19 1 -0.3635 0.5139 -0.8899 20 1 -0.3634 -1.0276 -0.0005 21 1 3.1263 1.4438 -0.0885 22 1 1.6061 1.9813 -0.8424 23 1 1.7507 1.9300 0.9310 24 1 1.6766 -1.7488 -1.2494 25 1 1.6766 -0.2072 -2.1393 26 1 3.1299 -0.7208 -1.2497 27 1 2.1886 -2.5830 0.3985 28 1 0.6008 -2.1865 1.0987 29 1 5.4600 -0.4984 4.6313 30 1 1.4927 -2.4842 4.7056 31 1 0.1265 -2.2159 3.4961 32 1 0.7171 -4.3979 2.3442 33 1 2.0835 -4.6670 3.5531 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083862500.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:14 Heat of formation + Delta-G solvation = -46.550535 kcal Electronic energy + Delta-G solvation = -13590.386783 eV Core-core repulsion = 11423.300143 eV Total energy + Delta-G solvation = -2167.086640 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.03939 -38.11226 -34.17496 -33.92741 -28.80108 -28.21495 -27.99508 -26.68116 -23.32641 -20.95541 -20.59976 -18.40363 -17.30982 -16.73266 -16.10412 -16.05955 -15.10028 -14.71417 -14.57467 -14.09995 -13.99411 -13.23280 -13.09275 -12.88566 -12.76262 -12.59061 -12.41512 -12.18183 -12.00218 -11.78132 -11.67758 -11.17469 -10.89483 -10.55633 -10.41318 -9.88826 -8.24185 -6.30103 1.36491 1.45581 1.73186 2.51043 2.86528 3.15476 3.41555 3.98085 4.02122 4.19353 4.26606 4.34726 4.48238 4.54994 4.70819 4.72601 4.79376 4.85317 4.86887 4.94571 4.97124 5.06365 5.08265 5.18083 5.37646 5.43122 5.47693 5.48424 5.77378 6.29890 6.66619 6.85090 7.42828 8.91031 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.031193 B = 0.016013 C = 0.013538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.428441 B = 1748.211307 C = 2067.685820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.081 3.919 3 C -0.137 4.137 4 C -0.170 4.170 5 O -0.382 6.382 6 C 0.109 3.891 7 C -0.031 4.031 8 C -0.481 4.481 9 H 0.027 0.973 10 C 0.029 3.971 11 N -0.957 5.957 12 Si 0.942 3.058 13 H -0.291 1.291 14 H -0.314 1.314 15 H -0.201 1.201 16 C -0.196 4.196 17 C -0.156 4.156 18 H 0.052 0.948 19 H 0.087 0.913 20 H 0.060 0.940 21 H 0.045 0.955 22 H 0.098 0.902 23 H 0.047 0.953 24 H 0.059 0.941 25 H 0.087 0.913 26 H 0.044 0.956 27 H 0.040 0.960 28 H 0.055 0.945 29 H 0.261 0.739 30 H 0.065 0.935 31 H 0.102 0.898 32 H 0.112 0.888 33 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.755 2.700 -9.280 16.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.042 3.958 3 C -0.194 4.194 4 C -0.227 4.227 5 O -0.302 6.302 6 C 0.033 3.967 7 C -0.032 4.032 8 C -0.519 4.519 9 H 0.045 0.955 10 C -0.168 4.168 11 N -0.598 5.598 12 Si 0.769 3.231 13 H -0.218 1.218 14 H -0.242 1.242 15 H -0.123 1.123 16 C -0.233 4.233 17 C -0.193 4.193 18 H 0.071 0.929 19 H 0.106 0.894 20 H 0.079 0.921 21 H 0.065 0.935 22 H 0.117 0.883 23 H 0.067 0.933 24 H 0.078 0.922 25 H 0.106 0.894 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.121 0.879 32 H 0.130 0.870 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.545 2.884 -9.068 15.746 hybrid contribution 0.376 0.381 0.554 0.770 sum -12.169 3.264 -8.514 15.206 Atomic orbital electron populations 1.22326 0.94488 1.02646 1.02973 1.21813 0.94329 0.93536 0.86143 1.21788 1.01115 0.93818 1.02654 1.22367 1.01113 1.01146 0.98070 1.88222 1.78800 1.21820 1.41379 1.21954 0.96895 0.81912 0.95960 1.19407 0.92024 0.99044 0.92735 1.20369 0.90874 1.10677 1.29948 0.95512 1.25739 0.96792 0.99117 0.95109 1.70065 1.19471 1.31972 1.38265 0.85899 0.82137 0.76566 0.78503 1.21815 1.24224 1.12266 1.22955 0.99939 1.03128 0.97275 1.22931 1.02718 0.90312 1.03377 0.92867 0.89433 0.92095 0.93547 0.88327 0.93335 0.92165 0.89398 0.93688 0.94185 0.92660 0.93056 0.91619 0.87935 0.86954 0.90305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.15 8.39 71.98 0.60 -3.54 16 2 C 0.08 2.53 1.14 -10.80 -0.01 2.51 16 3 C -0.14 -3.97 8.84 71.98 0.64 -3.33 16 4 C -0.17 -4.64 8.09 71.98 0.58 -4.06 16 5 O -0.38 -16.13 6.72 -148.98 -1.00 -17.13 16 6 C 0.11 4.36 4.92 71.98 0.35 4.71 16 7 C -0.03 -1.46 1.37 -52.93 -0.07 -1.53 16 8 C -0.48 -28.62 9.21 25.60 0.24 -28.38 16 9 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16 10 C 0.03 1.78 5.47 84.65 0.46 2.25 16 11 N -0.96 -63.21 13.96 21.45 0.30 -62.91 16 12 Si 0.94 48.49 23.62 68.60 1.62 50.11 16 13 H -0.29 -14.57 7.08 99.48 0.70 -13.87 16 14 H -0.31 -16.54 7.11 99.48 0.71 -15.83 16 15 H -0.20 -9.44 5.12 99.48 0.51 -8.93 16 16 C -0.20 -8.15 7.25 30.62 0.22 -7.92 16 17 C -0.16 -6.05 9.96 30.62 0.30 -5.75 16 18 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 19 H 0.09 1.63 8.14 -2.39 -0.02 1.62 16 20 H 0.06 1.46 6.54 -2.39 -0.02 1.44 16 21 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 22 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 23 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.06 1.61 6.60 -2.39 -0.02 1.59 16 25 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.04 1.58 6.64 -2.39 -0.02 1.57 16 28 H 0.06 1.84 6.27 -2.38 -0.01 1.83 16 29 H 0.26 16.30 8.31 -92.71 -0.77 15.53 16 30 H 0.07 3.00 6.55 -2.39 -0.02 2.98 16 31 H 0.10 3.65 8.14 -2.39 -0.02 3.63 16 32 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 33 H 0.08 3.19 8.14 -2.39 -0.02 3.18 16 Total: -1.00 -70.65 258.63 5.09 -65.56 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: 0.85 Total: 9.42 kcal Atomic # 6 Polarization: -48.37 SS G_CDS: 3.32 Total: -45.05 kcal Atomic # 7 Polarization: -63.21 SS G_CDS: 0.30 Total: -62.91 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -1.00 Total: -17.13 kcal Atomic # 14 Polarization: 48.49 SS G_CDS: 1.62 Total: 50.11 kcal Total: -70.65 5.09 -65.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862500.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.012 kcal (2) G-P(sol) polarization free energy of solvation -70.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds