Wall clock time and date at job start Mon Mar 30 2020 02:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52990 * 109.47332 * 2 1 4 4 C 1.53011 * 109.47434 * 179.97438 * 3 2 1 5 5 O 1.42890 * 109.47283 * 179.97438 * 4 3 2 6 6 C 1.42900 * 114.00097 * 179.97438 * 5 4 3 7 7 C 1.52994 * 109.47433 * 179.97438 * 6 5 4 8 8 C 1.50697 * 115.55403 * 294.87900 * 7 6 5 9 9 H 1.07995 * 120.00264 * 99.47893 * 8 7 6 10 10 C 1.37879 * 119.99779 * 279.20205 * 8 7 6 11 11 N 1.31514 * 120.00065 * 355.32933 * 10 8 7 12 12 Si 1.86799 * 120.00299 * 175.32772 * 10 8 7 13 13 H 1.48503 * 109.46706 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.47335 * 119.99939 * 12 10 8 15 15 H 1.48501 * 109.47479 * 240.00550 * 12 10 8 16 16 C 1.53003 * 117.51711 * 80.58021 * 7 6 5 17 17 C 1.52999 * 60.00279 * 107.47740 * 16 7 6 18 18 H 1.09002 * 109.47252 * 179.97438 * 1 2 3 19 19 H 1.09002 * 109.47332 * 300.00455 * 1 2 3 20 20 H 1.09011 * 109.46597 * 60.00065 * 1 2 3 21 21 H 1.09002 * 109.47332 * 239.99545 * 2 1 3 22 22 H 1.09007 * 109.46655 * 120.00444 * 2 1 3 23 23 H 1.08999 * 109.47346 * 60.00043 * 3 2 1 24 24 H 1.09000 * 109.47735 * 299.99438 * 3 2 1 25 25 H 1.08999 * 109.46493 * 59.99920 * 4 3 2 26 26 H 1.09000 * 109.46527 * 300.00578 * 4 3 2 27 27 H 1.09006 * 109.46783 * 60.00073 * 6 5 4 28 28 H 1.09000 * 109.47314 * 300.00395 * 6 5 4 29 29 H 0.96998 * 120.00374 * 179.97438 * 11 10 8 30 30 H 1.08998 * 117.49928 * 214.97028 * 16 7 6 31 31 H 1.09005 * 117.49765 * 359.97438 * 16 7 6 32 32 H 1.08999 * 117.50409 * 252.51047 * 17 16 7 33 33 H 1.09006 * 117.51633 * 107.47728 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 8 4.0465 2.7896 0.0000 6 6 5.4710 2.9024 0.0012 7 6 5.8656 4.3806 -0.0003 8 6 5.4817 5.1547 -1.2349 9 1 4.5980 5.7755 -1.2300 10 6 6.2618 5.0748 -2.3689 11 7 7.3889 4.3976 -2.3454 12 14 5.7179 5.9285 -3.9389 13 1 4.4239 6.6184 -3.7044 14 1 6.7433 6.9244 -4.3417 15 1 5.5543 4.9221 -5.0185 16 6 5.8321 5.1225 1.3375 17 6 7.1736 4.7633 0.6953 18 1 -0.3634 -1.0277 -0.0005 19 1 -0.3634 0.5139 0.8899 20 1 -0.3633 0.5139 -0.8901 21 1 1.8934 -0.5139 -0.8899 22 1 1.8933 -0.5139 0.8900 23 1 1.6767 1.9563 0.8900 24 1 1.6769 1.9563 -0.8900 25 1 3.9337 0.9284 -0.8891 26 1 3.9330 0.9286 0.8908 27 1 5.8745 2.4182 -0.8882 28 1 5.8731 2.4195 0.8918 29 1 7.9376 4.3411 -3.1433 30 1 5.5324 6.1703 1.3245 31 1 5.5285 4.5575 2.2188 32 1 7.7528 3.9620 1.1541 33 1 7.7566 5.5747 0.2595 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083862510.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:16 Heat of formation + Delta-G solvation = -45.721447 kcal Electronic energy + Delta-G solvation = -12671.705549 eV Core-core repulsion = 10504.654861 eV Total energy + Delta-G solvation = -2167.050688 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -37.59725 -35.94804 -34.34503 -31.86099 -29.03908 -26.04003 -24.87083 -22.82637 -21.01398 -20.88391 -19.04803 -16.20438 -15.73956 -15.33616 -14.63814 -14.26997 -14.21779 -13.55680 -13.01050 -12.62688 -12.22910 -11.86710 -11.32536 -11.17967 -10.96761 -10.90460 -10.78927 -10.46462 -10.41409 -10.36503 -10.10805 -9.34447 -9.01215 -8.56539 -8.34174 -8.02815 -5.97319 -4.00471 3.32757 3.40527 3.46432 4.38156 4.48011 5.05480 5.20677 5.23710 5.32678 5.52833 5.54912 5.79673 5.81239 5.91766 5.98530 6.03902 6.15297 6.24531 6.37339 6.46026 6.47841 6.52448 6.77298 6.79643 6.87889 7.14677 7.50423 7.57899 7.95987 8.24635 8.54430 9.00160 9.63623 11.12258 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.031250 B = 0.008974 C = 0.007584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.784955 B = 3119.526624 C = 3691.309810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.117 4.117 4 C 0.060 3.940 5 O -0.374 6.374 6 C 0.110 3.890 7 C 0.042 3.958 8 C -0.478 4.478 9 H 0.061 0.939 10 C 0.066 3.934 11 N -0.886 5.886 12 Si 0.890 3.110 13 H -0.272 1.272 14 H -0.285 1.285 15 H -0.284 1.284 16 C -0.206 4.206 17 C -0.151 4.151 18 H 0.051 0.949 19 H 0.054 0.946 20 H 0.054 0.946 21 H 0.061 0.939 22 H 0.060 0.940 23 H 0.066 0.934 24 H 0.070 0.930 25 H 0.039 0.961 26 H 0.034 0.966 27 H 0.051 0.949 28 H 0.014 0.986 29 H 0.258 0.742 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.410 -6.885 3.966 10.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.155 4.155 4 C -0.017 4.017 5 O -0.293 6.293 6 C 0.034 3.966 7 C 0.041 3.959 8 C -0.516 4.516 9 H 0.079 0.921 10 C -0.136 4.136 11 N -0.524 5.524 12 Si 0.718 3.282 13 H -0.196 1.196 14 H -0.211 1.211 15 H -0.210 1.210 16 C -0.243 4.243 17 C -0.189 4.189 18 H 0.070 0.930 19 H 0.073 0.927 20 H 0.074 0.926 21 H 0.080 0.920 22 H 0.078 0.922 23 H 0.085 0.915 24 H 0.088 0.912 25 H 0.057 0.943 26 H 0.052 0.948 27 H 0.069 0.931 28 H 0.032 0.968 29 H 0.068 0.932 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.373 -6.771 3.844 10.723 hybrid contribution 0.097 0.095 -0.905 0.915 sum -7.276 -6.676 2.939 10.302 Atomic orbital electron populations 1.21754 0.95814 1.01234 1.01965 1.21450 0.95831 0.96777 1.01909 1.21515 0.94509 0.96314 1.03165 1.22352 0.94331 0.86104 0.98954 1.87943 1.22857 1.23424 1.95099 1.22122 0.78986 0.98136 0.97386 1.18758 0.96369 0.89956 0.90801 1.20441 1.09549 1.26695 0.94928 0.92119 1.24987 0.94614 0.95346 0.98652 1.70019 1.12144 1.41769 1.28483 0.86557 0.78782 0.79314 0.83515 1.19638 1.21134 1.21030 1.22923 1.03277 1.00468 0.97662 1.22528 0.90457 1.02205 1.03675 0.92992 0.92737 0.92645 0.92008 0.92158 0.91499 0.91164 0.94277 0.94786 0.93126 0.96808 0.93229 0.90457 0.91703 0.92033 0.89650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.91 37.16 0.37 -1.15 16 2 C -0.12 -1.43 5.93 -26.74 -0.16 -1.59 16 3 C -0.12 -1.75 5.58 -26.73 -0.15 -1.90 16 4 C 0.06 1.07 5.94 37.16 0.22 1.29 16 5 O -0.37 -8.61 10.27 -35.23 -0.36 -8.97 16 6 C 0.11 2.66 5.76 37.15 0.21 2.87 16 7 C 0.04 1.09 1.61 -155.66 -0.25 0.84 16 8 C -0.48 -13.68 8.75 -34.44 -0.30 -13.98 16 9 H 0.06 1.76 7.82 -52.49 -0.41 1.35 16 10 C 0.07 1.86 5.44 -17.82 -0.10 1.76 16 11 N -0.89 -25.65 12.86 55.43 0.71 -24.94 16 12 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 13 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 14 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 15 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 16 C -0.21 -4.78 9.95 -26.73 -0.27 -5.05 16 17 C -0.15 -3.68 9.39 -26.73 -0.25 -3.93 16 18 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 19 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 20 H 0.05 0.56 8.14 -51.92 -0.42 0.14 16 21 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 24 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 1.31 8.14 -51.93 -0.42 0.88 16 28 H 0.01 0.31 8.09 -51.93 -0.42 -0.11 16 29 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 31 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 33 H 0.08 2.19 8.14 -51.93 -0.42 1.77 16 LS Contribution 280.47 15.07 4.23 4.23 Total: -1.00 -29.60 280.47 -7.00 -36.60 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -5.88 Total: -2.83 kcal Atomic # 6 Polarization: -20.16 SS G_CDS: -0.67 Total: -20.83 kcal Atomic # 7 Polarization: -25.65 SS G_CDS: 0.71 Total: -24.94 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: -0.36 Total: -8.97 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.60 -7.00 -36.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862510.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.123 kcal (2) G-P(sol) polarization free energy of solvation -29.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds