Wall clock time and date at job start Mon Mar 30 2020 02:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52990 * 109.47332 * 2 1 4 4 C 1.53011 * 109.47434 * 179.97438 * 3 2 1 5 5 O 1.42890 * 109.47283 * 179.97438 * 4 3 2 6 6 C 1.42900 * 114.00097 * 179.97438 * 5 4 3 7 7 C 1.52994 * 109.47433 * 179.97438 * 6 5 4 8 8 C 1.50697 * 115.55403 * 294.87900 * 7 6 5 9 9 H 1.07995 * 120.00264 * 99.47893 * 8 7 6 10 10 C 1.37879 * 119.99779 * 279.20205 * 8 7 6 11 11 N 1.31514 * 120.00065 * 355.32933 * 10 8 7 12 12 Si 1.86799 * 120.00299 * 175.32772 * 10 8 7 13 13 H 1.48503 * 109.46706 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.47335 * 119.99939 * 12 10 8 15 15 H 1.48501 * 109.47479 * 240.00550 * 12 10 8 16 16 C 1.53003 * 117.51711 * 80.58021 * 7 6 5 17 17 C 1.52999 * 60.00279 * 107.47740 * 16 7 6 18 18 H 1.09002 * 109.47252 * 179.97438 * 1 2 3 19 19 H 1.09002 * 109.47332 * 300.00455 * 1 2 3 20 20 H 1.09011 * 109.46597 * 60.00065 * 1 2 3 21 21 H 1.09002 * 109.47332 * 239.99545 * 2 1 3 22 22 H 1.09007 * 109.46655 * 120.00444 * 2 1 3 23 23 H 1.08999 * 109.47346 * 60.00043 * 3 2 1 24 24 H 1.09000 * 109.47735 * 299.99438 * 3 2 1 25 25 H 1.08999 * 109.46493 * 59.99920 * 4 3 2 26 26 H 1.09000 * 109.46527 * 300.00578 * 4 3 2 27 27 H 1.09006 * 109.46783 * 60.00073 * 6 5 4 28 28 H 1.09000 * 109.47314 * 300.00395 * 6 5 4 29 29 H 0.96998 * 120.00374 * 179.97438 * 11 10 8 30 30 H 1.08998 * 117.49928 * 214.97028 * 16 7 6 31 31 H 1.09005 * 117.49765 * 359.97438 * 16 7 6 32 32 H 1.08999 * 117.50409 * 252.51047 * 17 16 7 33 33 H 1.09006 * 117.51633 * 107.47728 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 8 4.0465 2.7896 0.0000 6 6 5.4710 2.9024 0.0012 7 6 5.8656 4.3806 -0.0003 8 6 5.4817 5.1547 -1.2349 9 1 4.5980 5.7755 -1.2300 10 6 6.2618 5.0748 -2.3689 11 7 7.3889 4.3976 -2.3454 12 14 5.7179 5.9285 -3.9389 13 1 4.4239 6.6184 -3.7044 14 1 6.7433 6.9244 -4.3417 15 1 5.5543 4.9221 -5.0185 16 6 5.8321 5.1225 1.3375 17 6 7.1736 4.7633 0.6953 18 1 -0.3634 -1.0277 -0.0005 19 1 -0.3634 0.5139 0.8899 20 1 -0.3633 0.5139 -0.8901 21 1 1.8934 -0.5139 -0.8899 22 1 1.8933 -0.5139 0.8900 23 1 1.6767 1.9563 0.8900 24 1 1.6769 1.9563 -0.8900 25 1 3.9337 0.9284 -0.8891 26 1 3.9330 0.9286 0.8908 27 1 5.8745 2.4182 -0.8882 28 1 5.8731 2.4195 0.8918 29 1 7.9376 4.3411 -3.1433 30 1 5.5324 6.1703 1.3245 31 1 5.5285 4.5575 2.2188 32 1 7.7528 3.9620 1.1541 33 1 7.7566 5.5747 0.2595 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083862510.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:16 Heat of formation + Delta-G solvation = -62.194455 kcal Electronic energy + Delta-G solvation = -12672.419872 eV Core-core repulsion = 10504.654861 eV Total energy + Delta-G solvation = -2167.765012 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.34492 -37.64180 -35.58620 -34.00071 -30.25920 -27.96935 -26.82758 -24.05965 -22.88261 -22.02794 -21.02091 -18.20585 -17.14885 -17.03739 -16.61298 -15.94569 -15.65648 -15.02372 -14.51119 -13.98003 -13.70551 -13.51515 -13.03529 -12.87222 -12.68740 -12.38432 -12.28951 -12.07891 -11.93908 -11.78434 -11.50768 -11.27116 -10.96824 -10.44950 -10.32737 -9.98057 -8.11814 -6.21238 1.38593 1.40677 1.52661 2.42682 2.84691 3.17130 3.58621 4.01023 4.11453 4.24351 4.33300 4.42244 4.50615 4.52018 4.56224 4.73116 4.82537 4.88400 4.95172 4.98383 4.99247 5.09981 5.22624 5.26449 5.37183 5.46637 5.58892 5.62910 5.78149 6.39078 6.60267 6.82526 7.45585 8.97302 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.031250 B = 0.008974 C = 0.007584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.784955 B = 3119.526624 C = 3691.309810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.112 4.112 4 C 0.052 3.948 5 O -0.398 6.398 6 C 0.122 3.878 7 C 0.004 3.996 8 C -0.499 4.499 9 H 0.045 0.955 10 C 0.022 3.978 11 N -0.910 5.910 12 Si 0.950 3.050 13 H -0.271 1.271 14 H -0.277 1.277 15 H -0.279 1.279 16 C -0.184 4.184 17 C -0.148 4.148 18 H 0.068 0.932 19 H 0.057 0.943 20 H 0.051 0.949 21 H 0.063 0.937 22 H 0.072 0.928 23 H 0.067 0.933 24 H 0.056 0.944 25 H 0.036 0.964 26 H 0.053 0.947 27 H 0.023 0.977 28 H 0.035 0.965 29 H 0.260 0.740 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.250 -7.563 4.415 12.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.155 4.155 3 C -0.150 4.150 4 C -0.025 4.025 5 O -0.318 6.318 6 C 0.046 3.954 7 C 0.003 3.997 8 C -0.537 4.537 9 H 0.063 0.937 10 C -0.177 4.177 11 N -0.549 5.549 12 Si 0.776 3.224 13 H -0.195 1.195 14 H -0.203 1.203 15 H -0.205 1.205 16 C -0.221 4.221 17 C -0.186 4.186 18 H 0.087 0.913 19 H 0.076 0.924 20 H 0.070 0.930 21 H 0.082 0.918 22 H 0.090 0.910 23 H 0.086 0.914 24 H 0.075 0.925 25 H 0.055 0.945 26 H 0.071 0.929 27 H 0.041 0.959 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.095 0.905 31 H 0.108 0.892 32 H 0.097 0.903 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.221 -7.452 4.300 11.900 hybrid contribution 0.335 0.285 -1.012 1.104 sum -7.886 -7.167 3.288 11.152 Atomic orbital electron populations 1.21747 0.94450 1.02413 1.02017 1.21431 0.96961 0.94432 1.02626 1.21528 0.92361 0.98555 1.02564 1.22670 0.96154 0.83956 0.99721 1.87900 1.22031 1.26649 1.95230 1.21825 0.79854 0.96763 0.96981 1.18956 0.98060 0.91267 0.91390 1.20646 1.09206 1.27165 0.96716 0.93702 1.25663 0.94643 0.96042 1.01381 1.70102 1.12837 1.42655 1.29282 0.85629 0.78444 0.78470 0.79883 1.19535 1.20281 1.20516 1.22930 1.01707 1.00428 0.97070 1.22438 0.90459 1.02049 1.03650 0.91257 0.92395 0.92958 0.91786 0.90970 0.91397 0.92494 0.94531 0.92856 0.95914 0.94670 0.93059 0.90526 0.89154 0.90294 0.91717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.91 71.98 0.71 -1.95 16 2 C -0.12 -2.49 5.93 30.59 0.18 -2.30 16 3 C -0.11 -3.21 5.58 30.59 0.17 -3.03 16 4 C 0.05 1.78 5.94 71.99 0.43 2.21 16 5 O -0.40 -18.18 10.27 -148.98 -1.53 -19.71 16 6 C 0.12 5.87 5.76 71.98 0.41 6.29 16 7 C 0.00 0.19 1.61 -52.93 -0.09 0.11 16 8 C -0.50 -28.90 8.75 25.60 0.22 -28.67 16 9 H 0.04 2.65 7.82 -2.91 -0.02 2.63 16 10 C 0.02 1.26 5.44 84.66 0.46 1.72 16 11 N -0.91 -53.07 12.86 21.45 0.28 -52.80 16 12 Si 0.95 44.89 29.54 68.60 2.03 46.92 16 13 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 14 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 15 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 16 C -0.18 -8.30 9.95 30.59 0.30 -8.00 16 17 C -0.15 -7.13 9.39 30.60 0.29 -6.85 16 18 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 19 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 20 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 21 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 22 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 23 H 0.07 1.90 8.14 -2.39 -0.02 1.89 16 24 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.02 1.19 8.14 -2.38 -0.02 1.17 16 28 H 0.04 1.51 8.09 -2.39 -0.02 1.49 16 29 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 30 H 0.08 3.42 8.14 -2.39 -0.02 3.40 16 31 H 0.09 3.58 8.14 -2.38 -0.02 3.56 16 32 H 0.08 3.46 8.14 -2.39 -0.02 3.44 16 33 H 0.06 3.34 8.14 -2.38 -0.02 3.32 16 Total: -1.00 -62.36 280.47 4.91 -57.46 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: 1.04 Total: 8.61 kcal Atomic # 6 Polarization: -43.57 SS G_CDS: 3.10 Total: -40.47 kcal Atomic # 7 Polarization: -53.07 SS G_CDS: 0.28 Total: -52.80 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -1.53 Total: -19.71 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -62.36 4.91 -57.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862510.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.737 kcal (2) G-P(sol) polarization free energy of solvation -62.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds