Wall clock time and date at job start Mon Mar 30 2020 02:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47020 * 2 1 4 4 H 1.08996 * 109.47149 * 54.99723 * 3 2 1 5 5 C 1.52997 * 109.47129 * 174.99961 * 3 2 1 6 6 O 1.42901 * 109.46855 * 294.99806 * 3 2 1 7 7 C 1.42903 * 113.99731 * 150.00210 * 6 3 2 8 8 C 1.52999 * 109.46842 * 179.97438 * 7 6 3 9 9 C 1.50704 * 115.55309 * 39.89597 * 8 7 6 10 10 H 1.07993 * 119.99776 * 264.93413 * 9 8 7 11 11 C 1.37876 * 119.99840 * 84.92583 * 9 8 7 12 12 N 1.31511 * 119.99974 * 358.51063 * 11 9 8 13 13 Si 1.86797 * 119.99629 * 178.50577 * 11 9 8 14 14 H 1.48502 * 109.47226 * 90.00440 * 13 11 9 15 15 H 1.48507 * 109.47033 * 210.00113 * 13 11 9 16 16 H 1.48500 * 109.47488 * 329.99951 * 13 11 9 17 17 C 1.53001 * 117.49904 * 254.18610 * 8 7 6 18 18 C 1.52996 * 60.00082 * 252.51260 * 17 8 7 19 19 H 1.09003 * 109.46679 * 60.00441 * 1 2 3 20 20 H 1.08994 * 109.47420 * 299.99888 * 1 2 3 21 21 H 1.09001 * 109.46666 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47371 * 119.99820 * 2 1 3 23 23 H 1.09004 * 109.47410 * 240.00028 * 2 1 3 24 24 H 1.08996 * 109.47299 * 59.99854 * 5 3 2 25 25 H 1.09004 * 109.47360 * 179.97438 * 5 3 2 26 26 H 1.09005 * 109.47092 * 300.00037 * 5 3 2 27 27 H 1.09003 * 109.47005 * 299.99618 * 7 6 3 28 28 H 1.08998 * 109.47210 * 60.00227 * 7 6 3 29 29 H 0.97000 * 120.00046 * 179.97438 * 12 11 9 30 30 H 1.09002 * 117.49805 * 0.02562 * 17 8 7 31 31 H 1.09003 * 117.50050 * 145.02311 * 17 8 7 32 32 H 1.09007 * 117.49994 * 252.51159 * 18 17 8 33 33 H 1.09004 * 117.52214 * 107.48198 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5648 1.4444 0.1257 6 8 1.6619 2.0814 -1.2211 7 6 1.4559 3.4903 -1.1004 8 6 1.0578 4.0659 -2.4609 9 6 0.1120 3.2194 -3.2733 10 1 0.4992 2.5412 -4.0192 11 6 -1.2478 3.3107 -3.0641 12 7 -1.7176 4.1148 -2.1356 13 14 -2.4224 2.2924 -4.0997 14 1 -2.6595 0.9845 -3.4376 15 1 -3.7115 3.0160 -4.2419 16 1 -1.8304 2.0673 -5.4429 17 6 2.1098 4.8772 -3.2199 18 6 0.9186 5.5855 -2.5717 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8934 -0.5138 0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 3.9994 0.9054 -0.7160 25 1 3.9282 2.4721 0.1253 26 1 3.8531 0.9571 1.0572 27 1 0.6617 3.6808 -0.3784 28 1 2.3768 3.9644 -0.7611 29 1 -2.6743 4.1794 -1.9886 30 1 3.0856 5.0006 -2.7500 31 1 2.1180 4.7988 -4.3070 32 1 0.1430 5.9730 -3.2324 33 1 1.1101 6.1752 -1.6751 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083862512.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:34 Heat of formation + Delta-G solvation = -40.042666 kcal Electronic energy + Delta-G solvation = -13257.775841 eV Core-core repulsion = 11090.971403 eV Total energy + Delta-G solvation = -2166.804438 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -37.84204 -36.01844 -32.82933 -31.79425 -29.37477 -26.08445 -24.95485 -23.07456 -21.05107 -20.32607 -19.03583 -16.47697 -15.50420 -14.62410 -14.46687 -14.13664 -13.57739 -13.12476 -12.83813 -12.61742 -12.16844 -11.75215 -11.43645 -11.08080 -10.87760 -10.84674 -10.63003 -10.51214 -10.38894 -10.11979 -9.94371 -9.36059 -8.89809 -8.54329 -8.30839 -7.93684 -5.91710 -3.93739 3.36852 3.42808 3.46925 4.49191 4.60276 5.26249 5.38542 5.42131 5.49860 5.61368 5.78026 5.95020 6.04561 6.09031 6.17794 6.33980 6.35524 6.44483 6.47066 6.56000 6.63231 6.75995 6.79600 6.95024 6.98910 7.13821 7.47647 7.55751 8.00694 8.31837 8.62319 9.05096 9.69570 11.18380 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.026716 B = 0.014628 C = 0.010558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.791147 B = 1913.737491 C = 2651.431417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.114 4.114 3 C 0.079 3.921 4 H 0.049 0.951 5 C -0.172 4.172 6 O -0.351 6.351 7 C 0.111 3.889 8 C 0.043 3.957 9 C -0.469 4.469 10 H 0.059 0.941 11 C 0.069 3.931 12 N -0.887 5.887 13 Si 0.888 3.112 14 H -0.280 1.280 15 H -0.289 1.289 16 H -0.275 1.275 17 C -0.212 4.212 18 C -0.151 4.151 19 H 0.075 0.925 20 H 0.046 0.954 21 H 0.044 0.956 22 H 0.060 0.940 23 H 0.066 0.934 24 H 0.059 0.941 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.044 0.956 28 H 0.012 0.988 29 H 0.257 0.743 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.554 -3.983 4.628 8.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C 0.020 3.980 4 H 0.067 0.933 5 C -0.229 4.229 6 O -0.270 6.270 7 C 0.034 3.966 8 C 0.043 3.957 9 C -0.507 4.507 10 H 0.077 0.923 11 C -0.133 4.133 12 N -0.525 5.525 13 Si 0.716 3.284 14 H -0.206 1.206 15 H -0.215 1.215 16 H -0.200 1.200 17 C -0.249 4.249 18 C -0.189 4.189 19 H 0.094 0.906 20 H 0.065 0.935 21 H 0.063 0.937 22 H 0.079 0.921 23 H 0.085 0.915 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.030 0.970 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.349 -4.014 4.529 8.077 hybrid contribution -0.651 -0.288 -0.147 0.727 sum 4.698 -4.302 4.382 7.732 Atomic orbital electron populations 1.21720 0.95333 1.00612 1.03184 1.21544 0.96767 0.95461 1.01379 1.21991 0.92963 0.93980 0.89088 0.93309 1.22294 0.97549 1.01783 1.01301 1.88085 1.88666 1.21227 1.28977 1.22053 0.95498 0.80251 0.98772 1.18770 0.95122 0.89999 0.91846 1.20275 0.89612 1.21895 1.18916 0.92312 1.24914 0.98047 0.95162 0.95143 1.70000 1.12908 1.37501 1.32103 0.86669 0.80404 0.80436 0.80928 1.20627 1.21464 1.19967 1.23066 0.92771 1.10034 0.99027 1.22492 0.98637 0.97141 1.00621 0.90585 0.93505 0.93725 0.92094 0.91514 0.92148 0.92882 0.92726 0.93767 0.97018 0.93337 0.91866 0.90439 0.89715 0.92084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.81 37.16 0.36 -2.25 16 2 C -0.11 -1.83 5.64 -26.73 -0.15 -1.98 16 3 C 0.08 1.41 2.72 -26.73 -0.07 1.34 16 4 H 0.05 0.87 7.79 -51.93 -0.40 0.46 16 5 C -0.17 -2.58 9.53 37.16 0.35 -2.23 16 6 O -0.35 -8.01 8.91 -35.23 -0.31 -8.32 16 7 C 0.11 2.61 5.81 37.16 0.22 2.83 16 8 C 0.04 1.10 1.81 -155.66 -0.28 0.82 16 9 C -0.47 -13.22 8.24 -34.44 -0.28 -13.51 16 10 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 11 C 0.07 1.93 5.41 -17.82 -0.10 1.84 16 12 N -0.89 -25.51 12.80 55.43 0.71 -24.80 16 13 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 14 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 15 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 16 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 17 C -0.21 -4.81 9.88 -26.73 -0.26 -5.08 16 18 C -0.15 -3.64 9.33 -26.73 -0.25 -3.89 16 19 H 0.08 1.61 7.82 -51.93 -0.41 1.20 16 20 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 21 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 22 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 24 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 25 H 0.05 0.80 7.87 -51.93 -0.41 0.39 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.04 1.10 8.09 -51.93 -0.42 0.68 16 28 H 0.01 0.25 7.67 -51.93 -0.40 -0.15 16 29 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.06 1.30 8.08 -51.93 -0.42 0.88 16 31 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 32 H 0.08 2.16 8.14 -51.93 -0.42 1.74 16 33 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 277.47 15.07 4.18 4.18 Total: -1.00 -29.02 277.47 -6.71 -35.74 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -5.81 Total: -1.42 kcal Atomic # 6 Polarization: -21.65 SS G_CDS: -0.46 Total: -22.11 kcal Atomic # 7 Polarization: -25.51 SS G_CDS: 0.71 Total: -24.80 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: -0.31 Total: -8.32 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.02 -6.71 -35.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862512.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.303 kcal (2) G-P(sol) polarization free energy of solvation -29.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds