Wall clock time and date at job start Mon Mar 30 2020 02:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47020 * 2 1 4 4 H 1.08996 * 109.47149 * 54.99723 * 3 2 1 5 5 C 1.52997 * 109.47129 * 174.99961 * 3 2 1 6 6 O 1.42901 * 109.46855 * 294.99806 * 3 2 1 7 7 C 1.42903 * 113.99731 * 150.00210 * 6 3 2 8 8 C 1.52999 * 109.46842 * 179.97438 * 7 6 3 9 9 C 1.50704 * 115.55309 * 39.89597 * 8 7 6 10 10 H 1.07993 * 119.99776 * 264.93413 * 9 8 7 11 11 C 1.37876 * 119.99840 * 84.92583 * 9 8 7 12 12 N 1.31511 * 119.99974 * 358.51063 * 11 9 8 13 13 Si 1.86797 * 119.99629 * 178.50577 * 11 9 8 14 14 H 1.48502 * 109.47226 * 90.00440 * 13 11 9 15 15 H 1.48507 * 109.47033 * 210.00113 * 13 11 9 16 16 H 1.48500 * 109.47488 * 329.99951 * 13 11 9 17 17 C 1.53001 * 117.49904 * 254.18610 * 8 7 6 18 18 C 1.52996 * 60.00082 * 252.51260 * 17 8 7 19 19 H 1.09003 * 109.46679 * 60.00441 * 1 2 3 20 20 H 1.08994 * 109.47420 * 299.99888 * 1 2 3 21 21 H 1.09001 * 109.46666 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47371 * 119.99820 * 2 1 3 23 23 H 1.09004 * 109.47410 * 240.00028 * 2 1 3 24 24 H 1.08996 * 109.47299 * 59.99854 * 5 3 2 25 25 H 1.09004 * 109.47360 * 179.97438 * 5 3 2 26 26 H 1.09005 * 109.47092 * 300.00037 * 5 3 2 27 27 H 1.09003 * 109.47005 * 299.99618 * 7 6 3 28 28 H 1.08998 * 109.47210 * 60.00227 * 7 6 3 29 29 H 0.97000 * 120.00046 * 179.97438 * 12 11 9 30 30 H 1.09002 * 117.49805 * 0.02562 * 17 8 7 31 31 H 1.09003 * 117.50050 * 145.02311 * 17 8 7 32 32 H 1.09007 * 117.49994 * 252.51159 * 18 17 8 33 33 H 1.09004 * 117.52214 * 107.48198 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5648 1.4444 0.1257 6 8 1.6619 2.0814 -1.2211 7 6 1.4559 3.4903 -1.1004 8 6 1.0578 4.0659 -2.4609 9 6 0.1120 3.2194 -3.2733 10 1 0.4992 2.5412 -4.0192 11 6 -1.2478 3.3107 -3.0641 12 7 -1.7176 4.1148 -2.1356 13 14 -2.4224 2.2924 -4.0997 14 1 -2.6595 0.9845 -3.4376 15 1 -3.7115 3.0160 -4.2419 16 1 -1.8304 2.0673 -5.4429 17 6 2.1098 4.8772 -3.2199 18 6 0.9186 5.5855 -2.5717 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8934 -0.5138 0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 3.9994 0.9054 -0.7160 25 1 3.9282 2.4721 0.1253 26 1 3.8531 0.9571 1.0572 27 1 0.6617 3.6808 -0.3784 28 1 2.3768 3.9644 -0.7611 29 1 -2.6743 4.1794 -1.9886 30 1 3.0856 5.0006 -2.7500 31 1 2.1180 4.7988 -4.3070 32 1 0.1430 5.9730 -3.2324 33 1 1.1101 6.1752 -1.6751 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083862512.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:34 Heat of formation + Delta-G solvation = -56.176680 kcal Electronic energy + Delta-G solvation = -13258.475465 eV Core-core repulsion = 11090.971403 eV Total energy + Delta-G solvation = -2167.504061 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.50108 -37.80248 -34.33885 -33.91134 -30.68169 -27.99791 -26.96122 -24.42712 -22.91702 -21.75676 -20.98260 -18.31718 -17.29427 -16.61469 -16.08028 -15.90508 -15.17784 -14.58239 -14.52615 -14.19330 -13.63471 -13.47051 -13.07465 -12.86043 -12.72239 -12.51795 -12.30262 -12.20237 -11.98669 -11.85215 -11.39288 -11.24610 -10.85181 -10.39719 -10.26162 -9.82853 -8.05829 -6.13074 1.40035 1.41353 1.50470 2.45599 3.02369 3.24595 3.53925 3.95196 4.18202 4.25365 4.39109 4.47511 4.51085 4.58992 4.70511 4.76260 4.84345 4.88407 4.97270 5.03906 5.06037 5.18712 5.24048 5.29888 5.36793 5.52151 5.60076 5.64276 5.81875 6.42179 6.76693 6.91415 7.52636 9.03476 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.026716 B = 0.014628 C = 0.010558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.791147 B = 1913.737491 C = 2651.431417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.110 4.110 3 C 0.065 3.935 4 H 0.047 0.953 5 C -0.163 4.163 6 O -0.379 6.379 7 C 0.125 3.875 8 C 0.005 3.995 9 C -0.484 4.484 10 H 0.042 0.958 11 C 0.027 3.973 12 N -0.911 5.911 13 Si 0.942 3.058 14 H -0.278 1.278 15 H -0.282 1.282 16 H -0.271 1.271 17 C -0.188 4.188 18 C -0.151 4.151 19 H 0.027 0.973 20 H 0.048 0.952 21 H 0.067 0.933 22 H 0.100 0.900 23 H 0.062 0.938 24 H 0.058 0.942 25 H 0.049 0.951 26 H 0.086 0.914 27 H 0.018 0.982 28 H 0.035 0.965 29 H 0.257 0.743 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.656 -4.831 5.276 9.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.148 4.148 3 C 0.007 3.993 4 H 0.065 0.935 5 C -0.221 4.221 6 O -0.298 6.298 7 C 0.048 3.952 8 C 0.005 3.995 9 C -0.522 4.522 10 H 0.061 0.939 11 C -0.172 4.172 12 N -0.550 5.550 13 Si 0.768 3.232 14 H -0.204 1.204 15 H -0.208 1.208 16 H -0.196 1.196 17 C -0.225 4.225 18 C -0.189 4.189 19 H 0.046 0.954 20 H 0.067 0.933 21 H 0.086 0.914 22 H 0.118 0.882 23 H 0.081 0.919 24 H 0.077 0.923 25 H 0.068 0.932 26 H 0.105 0.895 27 H 0.036 0.964 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.110 0.890 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.462 -4.867 5.175 9.603 hybrid contribution -0.967 -0.056 -0.325 1.022 sum 5.495 -4.923 4.850 8.829 Atomic orbital electron populations 1.21677 0.96652 1.01408 1.00866 1.21589 0.95540 0.94581 1.03045 1.22362 0.95193 0.94496 0.87222 0.93504 1.22216 0.94847 1.02062 1.02946 1.88036 1.89173 1.20791 1.31848 1.21767 0.95483 0.81153 0.96812 1.18985 0.96691 0.90515 0.93303 1.20456 0.90647 1.22076 1.18994 0.93942 1.25529 0.99371 0.96157 0.96171 1.70090 1.13047 1.38638 1.33213 0.85813 0.78678 0.79109 0.79601 1.20412 1.20805 1.19578 1.23067 0.93280 1.07199 0.98917 1.22394 0.98958 0.96468 1.01062 0.95373 0.93252 0.91383 0.88184 0.91889 0.92280 0.93177 0.89494 0.96402 0.94726 0.93403 0.88974 0.90570 0.91962 0.90492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.04 9.81 71.98 0.71 -4.33 16 2 C -0.11 -3.32 5.64 30.59 0.17 -3.14 16 3 C 0.07 2.24 2.72 30.59 0.08 2.32 16 4 H 0.05 1.61 7.79 -2.39 -0.02 1.59 16 5 C -0.16 -4.45 9.53 71.98 0.69 -3.76 16 6 O -0.38 -17.26 8.91 -148.98 -1.33 -18.58 16 7 C 0.12 5.85 5.81 71.98 0.42 6.27 16 8 C 0.01 0.28 1.81 -52.93 -0.10 0.18 16 9 C -0.48 -27.73 8.24 25.60 0.21 -27.52 16 10 H 0.04 2.50 7.81 -2.91 -0.02 2.47 16 11 C 0.03 1.53 5.41 84.65 0.46 1.99 16 12 N -0.91 -53.32 12.80 21.45 0.27 -53.05 16 13 Si 0.94 45.24 29.54 68.60 2.03 47.26 16 14 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 15 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 16 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 17 C -0.19 -8.27 9.88 30.59 0.30 -7.97 16 18 C -0.15 -7.24 9.33 30.59 0.29 -6.95 16 19 H 0.03 1.19 7.82 -2.39 -0.02 1.18 16 20 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 21 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 22 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 23 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 24 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.05 1.38 7.87 -2.38 -0.02 1.36 16 26 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 27 H 0.02 0.91 8.09 -2.39 -0.02 0.89 16 28 H 0.03 1.43 7.67 -2.39 -0.02 1.42 16 29 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 30 H 0.09 3.51 8.08 -2.39 -0.02 3.49 16 31 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 32 H 0.06 3.22 8.14 -2.38 -0.02 3.20 16 33 H 0.08 3.37 8.14 -2.38 -0.02 3.35 16 Total: -1.00 -62.57 277.47 5.24 -57.32 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: 1.04 Total: 9.96 kcal Atomic # 6 Polarization: -46.14 SS G_CDS: 3.23 Total: -42.92 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: 0.27 Total: -53.05 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: -1.33 Total: -18.58 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -62.57 5.24 -57.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862512.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.148 kcal (2) G-P(sol) polarization free energy of solvation -62.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds