Wall clock time and date at job start Mon Mar 30 2020 02:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46416 * 2 1 4 4 H 1.09004 * 109.46936 * 304.99431 * 3 2 1 5 5 C 1.53004 * 109.46816 * 184.99950 * 3 2 1 6 6 O 1.42900 * 109.47504 * 64.99872 * 3 2 1 7 7 C 1.42900 * 114.00058 * 209.99877 * 6 3 2 8 8 C 1.52994 * 109.46911 * 179.97438 * 7 6 3 9 9 C 1.50700 * 115.56509 * 320.37009 * 8 7 6 10 10 H 1.07996 * 120.00067 * 99.50735 * 9 8 7 11 11 C 1.37872 * 119.99625 * 279.51102 * 9 8 7 12 12 N 1.31511 * 120.00951 * 7.60237 * 11 9 8 13 13 Si 1.86806 * 119.99623 * 187.60040 * 11 9 8 14 14 H 1.48498 * 109.47277 * 90.00024 * 13 11 9 15 15 H 1.48501 * 109.46961 * 210.00224 * 13 11 9 16 16 H 1.48502 * 109.47038 * 329.99962 * 13 11 9 17 17 C 1.53008 * 117.49608 * 174.68117 * 8 7 6 18 18 C 1.52996 * 60.03054 * 252.50010 * 17 8 7 19 19 H 1.08992 * 109.47336 * 299.99830 * 1 2 3 20 20 H 1.08998 * 109.47051 * 60.00597 * 1 2 3 21 21 H 1.09006 * 109.46527 * 180.02562 * 1 2 3 22 22 H 1.08992 * 109.47336 * 240.00170 * 2 1 3 23 23 H 1.08998 * 109.47051 * 119.99403 * 2 1 3 24 24 H 1.08993 * 109.47065 * 299.99957 * 5 3 2 25 25 H 1.09005 * 109.47156 * 59.99818 * 5 3 2 26 26 H 1.08998 * 109.46927 * 179.97438 * 5 3 2 27 27 H 1.09003 * 109.46930 * 59.99599 * 7 6 3 28 28 H 1.09003 * 109.46673 * 300.00135 * 7 6 3 29 29 H 0.96991 * 120.01143 * 180.02562 * 12 11 9 30 30 H 1.08996 * 117.49888 * 0.02562 * 17 8 7 31 31 H 1.08996 * 117.49519 * 144.99573 * 17 8 7 32 32 H 1.08997 * 117.50199 * 107.50572 * 18 17 8 33 33 H 1.09004 * 117.49771 * 252.52170 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 -0.8419 5 6 3.5647 1.4445 -0.1257 6 8 1.6618 2.0815 1.2210 7 6 1.4556 3.4904 1.1002 8 6 1.0563 4.0659 2.4604 9 6 0.1148 3.2165 3.2748 10 1 0.4991 2.5945 4.0696 11 6 -1.2372 3.2336 3.0050 12 7 -1.6888 3.8709 1.9470 13 14 -2.4277 2.3512 4.1425 14 1 -2.8804 3.2842 5.2054 15 1 -3.6013 1.8819 3.3630 16 1 -1.7477 1.1861 4.7633 17 6 0.9110 5.5851 2.5696 18 6 2.1057 4.8830 3.2181 19 1 -0.3633 0.5138 0.8899 20 1 -0.3633 0.5137 -0.8900 21 1 -0.3632 -1.0278 0.0005 22 1 1.8934 -0.5138 -0.8899 23 1 1.8933 -0.5137 0.8900 24 1 3.9994 0.9056 0.7161 25 1 3.8532 0.9572 -1.0571 26 1 3.9279 2.4722 -0.1262 27 1 0.6615 3.6808 0.3781 28 1 2.3766 3.9645 0.7608 29 1 -2.6399 3.8832 1.7574 30 1 1.0995 6.1745 1.6723 31 1 0.1342 5.9701 3.2301 32 1 3.0806 5.0105 2.7477 33 1 2.1147 4.8058 4.3054 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083862513.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:35 Heat of formation + Delta-G solvation = -55.787103 kcal Electronic energy + Delta-G solvation = -13276.602122 eV Core-core repulsion = 11109.114954 eV Total energy + Delta-G solvation = -2167.487168 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.48012 -37.78849 -34.31297 -33.93563 -30.66992 -27.96267 -26.96027 -24.41584 -22.94068 -21.73986 -20.97738 -18.31279 -17.28805 -16.59927 -16.04701 -15.90654 -15.17480 -14.57051 -14.53444 -14.17391 -13.63338 -13.44227 -13.07821 -12.89477 -12.68730 -12.51571 -12.29922 -12.19841 -11.98742 -11.84413 -11.39367 -11.27353 -10.79340 -10.40114 -10.25499 -9.82168 -8.05962 -6.11584 1.40042 1.41309 1.50902 2.46022 3.03946 3.24804 3.53052 3.96249 4.19238 4.26272 4.39675 4.48225 4.51123 4.61044 4.70646 4.77066 4.85045 4.89528 4.97092 5.04931 5.06810 5.19431 5.22516 5.30710 5.37682 5.54180 5.60119 5.61411 5.82955 6.42541 6.77941 6.93196 7.53521 9.03815 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.026812 B = 0.014704 C = 0.010630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.059448 B = 1903.723970 C = 2633.458922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.110 4.110 3 C 0.066 3.934 4 H 0.045 0.955 5 C -0.163 4.163 6 O -0.378 6.378 7 C 0.126 3.874 8 C 0.008 3.992 9 C -0.486 4.486 10 H 0.042 0.958 11 C 0.030 3.970 12 N -0.908 5.908 13 Si 0.940 3.060 14 H -0.276 1.276 15 H -0.284 1.284 16 H -0.273 1.273 17 C -0.160 4.160 18 C -0.186 4.186 19 H 0.028 0.972 20 H 0.047 0.953 21 H 0.067 0.933 22 H 0.099 0.901 23 H 0.062 0.938 24 H 0.058 0.942 25 H 0.086 0.914 26 H 0.049 0.951 27 H 0.020 0.980 28 H 0.032 0.968 29 H 0.257 0.743 30 H 0.078 0.922 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.554 -4.299 -4.858 9.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.147 4.147 3 C 0.008 3.992 4 H 0.063 0.937 5 C -0.220 4.220 6 O -0.298 6.298 7 C 0.049 3.951 8 C 0.008 3.992 9 C -0.524 4.524 10 H 0.061 0.939 11 C -0.169 4.169 12 N -0.547 5.547 13 Si 0.766 3.234 14 H -0.201 1.201 15 H -0.210 1.210 16 H -0.198 1.198 17 C -0.198 4.198 18 C -0.223 4.223 19 H 0.047 0.953 20 H 0.066 0.934 21 H 0.086 0.914 22 H 0.118 0.882 23 H 0.081 0.919 24 H 0.077 0.923 25 H 0.105 0.895 26 H 0.068 0.932 27 H 0.038 0.962 28 H 0.049 0.951 29 H 0.066 0.934 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.110 0.890 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.363 -4.359 -4.778 9.073 hybrid contribution -0.970 0.007 0.365 1.036 sum 5.393 -4.352 -4.413 8.216 Atomic orbital electron populations 1.21661 0.96610 1.01323 1.00870 1.21583 0.95579 0.94590 1.02968 1.22346 0.95121 0.94488 0.87261 0.93657 1.22215 0.94882 1.02029 1.02921 1.88033 1.89156 1.20848 1.31719 1.21739 0.95318 0.81094 0.96927 1.18987 0.96660 0.90238 0.93329 1.20442 0.91250 1.24958 1.15720 0.93930 1.25495 0.99412 0.95996 0.96034 1.70084 1.13823 1.44335 1.26413 0.85839 0.78922 0.79140 0.79462 1.20139 1.20989 1.19784 1.22492 0.99293 0.96830 1.01171 1.23054 0.93228 1.07065 0.98974 0.95314 0.93408 0.91389 0.88247 0.91928 0.92277 0.89527 0.93203 0.96154 0.95051 0.93415 0.90388 0.91886 0.88981 0.90404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.09 9.81 71.98 0.71 -4.38 16 2 C -0.11 -3.37 5.64 30.60 0.17 -3.20 16 3 C 0.07 2.31 2.72 30.60 0.08 2.39 16 4 H 0.05 1.60 7.79 -2.38 -0.02 1.58 16 5 C -0.16 -4.52 9.53 71.98 0.69 -3.84 16 6 O -0.38 -17.45 8.90 -148.98 -1.33 -18.78 16 7 C 0.13 5.97 5.82 71.98 0.42 6.39 16 8 C 0.01 0.42 1.70 -52.90 -0.09 0.33 16 9 C -0.49 -27.77 8.20 25.60 0.21 -27.56 16 10 H 0.04 2.50 7.82 -2.91 -0.02 2.47 16 11 C 0.03 1.71 5.41 84.65 0.46 2.17 16 12 N -0.91 -52.97 13.16 21.44 0.28 -52.69 16 13 Si 0.94 45.09 29.54 68.60 2.03 47.11 16 14 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 15 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 16 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 17 C -0.16 -7.57 9.76 30.60 0.30 -7.27 16 18 C -0.19 -8.14 9.88 30.62 0.30 -7.83 16 19 H 0.03 1.24 7.82 -2.39 -0.02 1.22 16 20 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 21 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 22 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 23 H 0.06 1.96 8.14 -2.39 -0.02 1.95 16 24 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 26 H 0.05 1.40 7.87 -2.39 -0.02 1.38 16 27 H 0.02 1.05 8.09 -2.39 -0.02 1.03 16 28 H 0.03 1.32 7.68 -2.39 -0.02 1.30 16 29 H 0.26 14.37 8.31 -92.72 -0.77 13.60 16 30 H 0.08 3.38 8.14 -2.39 -0.02 3.36 16 31 H 0.06 3.17 8.14 -2.39 -0.02 3.15 16 32 H 0.09 3.49 8.08 -2.39 -0.02 3.47 16 33 H 0.08 3.37 8.14 -2.38 -0.02 3.35 16 Total: -1.00 -62.36 278.14 5.27 -57.09 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: 1.04 Total: 10.07 kcal Atomic # 6 Polarization: -46.06 SS G_CDS: 3.25 Total: -42.81 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: 0.28 Total: -52.69 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -1.33 Total: -18.78 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Total: -62.36 5.27 -57.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862513.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.305 kcal (2) G-P(sol) polarization free energy of solvation -62.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds