Wall clock time and date at job start Mon Mar 30 2020 02:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86809 * 119.99924 * 2 1 4 4 H 1.48499 * 109.47295 * 270.00073 * 3 2 1 5 5 H 1.48499 * 109.46881 * 30.00152 * 3 2 1 6 6 H 1.48499 * 109.46836 * 150.00220 * 3 2 1 7 7 C 1.37879 * 120.00234 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00098 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99780 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.46764 * 179.97438 * 9 7 2 11 11 C 1.46909 * 110.99771 * 180.02562 * 10 9 7 12 12 H 1.08995 * 110.01381 * 44.71742 * 11 10 9 13 13 C 1.54750 * 110.01051 * 283.33399 * 11 10 9 14 14 C 1.54892 * 103.96231 * 217.12878 * 13 11 10 15 15 C 1.54885 * 102.91726 * 37.92000 * 14 13 11 16 16 C 1.53869 * 110.03000 * 166.11150 * 11 10 9 17 17 H 1.09002 * 110.03171 * 238.56312 * 16 11 10 18 18 C 1.53001 * 110.07651 * 359.97438 * 16 11 10 19 19 N 1.46904 * 109.46905 * 179.42637 * 18 16 11 20 20 H 0.97001 * 120.00227 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47327 * 60.00242 * 9 7 2 22 22 H 1.09000 * 109.47180 * 299.99914 * 9 7 2 23 23 H 1.00906 * 111.00060 * 303.94759 * 10 9 7 24 24 H 1.09001 * 110.69582 * 98.47648 * 13 11 10 25 25 H 1.09005 * 110.50376 * 335.67813 * 13 11 10 26 26 H 1.09004 * 110.75531 * 279.51445 * 14 13 11 27 27 H 1.09000 * 110.75921 * 156.33347 * 14 13 11 28 28 H 1.08999 * 110.48443 * 80.64081 * 15 14 13 29 29 H 1.09000 * 110.48843 * 203.15829 * 15 14 13 30 30 H 1.08995 * 109.46862 * 299.42000 * 18 16 11 31 31 H 1.09000 * 109.46870 * 59.42632 * 18 16 11 32 32 H 1.00895 * 110.99392 * 180.02562 * 19 18 16 33 33 H 1.00895 * 110.99549 * 303.94784 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2057 -3.6157 -0.0027 11 6 1.5054 -4.9071 -0.0045 12 1 0.6881 -4.8873 -0.7253 13 6 0.9577 -5.2144 1.4099 14 6 1.1479 -6.7443 1.5600 15 6 2.5057 -6.9949 0.8582 16 6 2.4879 -6.0389 -0.3525 17 1 2.1469 -6.5691 -1.2417 18 6 3.8869 -5.4660 -0.5885 19 7 4.8162 -6.5585 -0.9060 20 1 -0.4850 0.8400 0.0004 21 1 0.6247 -2.5564 -0.8920 22 1 0.6240 -2.5575 0.8880 23 1 2.8406 -3.5479 -0.7841 24 1 -0.0981 -4.9526 1.4794 25 1 1.5343 -4.6823 2.1665 26 1 0.3468 -7.2845 1.0555 27 1 1.1989 -7.0259 2.6118 28 1 3.3314 -6.7491 1.5261 29 1 2.5789 -8.0310 0.5278 30 1 3.8556 -4.7624 -1.4203 31 1 4.2250 -4.9510 0.3107 32 1 5.7478 -6.2056 -1.0659 33 1 4.8146 -7.2574 -0.1784 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084218321.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:40 Heat of formation + Delta-G solvation = -14.497217 kcal Electronic energy + Delta-G solvation = -12963.369890 eV Core-core repulsion = 10829.965937 eV Total energy + Delta-G solvation = -2133.403953 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.73567 -34.26957 -33.63210 -32.04369 -28.59817 -27.57719 -25.13636 -23.35976 -21.73990 -20.19133 -18.42013 -16.53011 -15.86199 -15.54063 -14.70204 -14.52871 -14.31378 -13.76923 -13.05655 -12.54833 -12.27523 -12.24949 -11.41465 -11.23177 -10.84511 -10.74729 -10.61610 -10.48123 -10.37295 -10.29531 -10.12897 -9.77221 -9.11125 -8.55120 -8.44716 -7.23962 -6.01772 -4.03626 3.31892 3.37888 3.42252 4.43704 4.65188 4.92883 4.96136 5.16946 5.34057 5.44496 5.65052 5.70270 5.85330 5.86779 5.95683 6.11038 6.17089 6.24269 6.30992 6.45283 6.59686 6.62531 6.81218 7.27284 7.35450 7.46660 7.55229 7.81287 8.16880 8.43224 8.65736 9.05939 9.61197 11.09337 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.045574 B = 0.008367 C = 0.007379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.239965 B = 3345.777312 C = 3793.422377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.513 4.513 8 H 0.061 0.939 9 C 0.192 3.808 10 N -0.685 5.685 11 C 0.085 3.915 12 H 0.032 0.968 13 C -0.111 4.111 14 C -0.125 4.125 15 C -0.113 4.113 16 C -0.087 4.087 17 H 0.070 0.930 18 C 0.070 3.930 19 N -0.856 5.856 20 H 0.261 0.739 21 H -0.016 1.016 22 H 0.029 0.971 23 H 0.328 0.672 24 H 0.058 0.942 25 H 0.076 0.924 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.047 0.953 32 H 0.337 0.663 33 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.076 -12.050 1.042 13.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.552 4.552 8 H 0.079 0.921 9 C 0.066 3.934 10 N -0.318 5.318 11 C -0.026 4.026 12 H 0.050 0.950 13 C -0.149 4.149 14 C -0.163 4.163 15 C -0.151 4.151 16 C -0.107 4.107 17 H 0.088 0.912 18 C -0.060 4.060 19 N -0.385 5.385 20 H 0.071 0.929 21 H 0.002 0.998 22 H 0.047 0.953 23 H 0.148 0.852 24 H 0.077 0.923 25 H 0.095 0.905 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.148 0.852 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.531 -12.013 1.080 12.884 hybrid contribution 0.445 1.294 -0.079 1.371 sum 4.976 -10.719 1.001 11.860 Atomic orbital electron populations 1.69963 1.06069 1.26720 1.50979 1.24992 0.94865 0.99325 0.95416 0.86505 0.79792 0.83134 0.78010 1.20745 1.21241 1.19823 1.21197 0.93429 0.90361 1.50222 0.92107 1.19571 0.90708 0.87425 0.95721 1.60995 1.20994 1.01032 1.48738 1.22174 0.94232 0.90287 0.95946 0.94984 1.22465 1.00485 0.94323 0.97608 1.22466 0.97007 0.97051 0.99729 1.22331 0.97678 0.98399 0.96695 1.21862 0.94992 0.95894 0.97916 0.91159 1.21789 0.91718 0.92218 1.00320 1.58828 1.12338 1.16252 1.51098 0.92949 0.99807 0.95313 0.85213 0.92337 0.90518 0.92072 0.92078 0.92039 0.92212 0.91127 0.93504 0.85170 0.85341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.51 -14.70 9.32 -34.44 -0.32 -15.03 16 8 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 9 C 0.19 5.11 5.27 -4.97 -0.03 5.09 16 10 N -0.68 -14.70 5.37 -106.53 -0.57 -15.27 16 11 C 0.08 1.55 3.22 -66.33 -0.21 1.34 16 12 H 0.03 0.63 7.99 -51.93 -0.42 0.21 16 13 C -0.11 -1.88 5.97 -24.81 -0.15 -2.03 16 14 C -0.12 -1.67 6.89 -24.74 -0.17 -1.84 16 15 C -0.11 -1.46 5.35 -25.07 -0.13 -1.59 16 16 C -0.09 -1.31 3.19 -89.50 -0.29 -1.59 16 17 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 18 C 0.07 1.02 4.92 -3.82 -0.02 1.00 16 19 N -0.86 -10.37 9.62 -10.37 -0.10 -10.47 16 20 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 21 H -0.02 -0.45 8.10 -51.93 -0.42 -0.87 16 22 H 0.03 0.82 7.72 -51.93 -0.40 0.42 16 23 H 0.33 6.79 6.06 -39.29 -0.24 6.55 16 24 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.08 1.42 8.06 -51.93 -0.42 1.00 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.78 7.77 -51.93 -0.40 0.38 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 1.11 6.67 -51.93 -0.35 0.76 16 31 H 0.05 0.74 7.77 -51.93 -0.40 0.34 16 32 H 0.34 3.56 9.08 -39.29 -0.36 3.20 16 33 H 0.33 3.61 7.94 -39.29 -0.31 3.30 16 LS Contribution 262.70 15.07 3.96 3.96 Total: -1.00 -29.88 262.70 -7.79 -37.66 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -5.37 Total: 6.83 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: -1.41 Total: -13.15 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: 0.07 Total: -52.16 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -29.88 -7.79 -37.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084218321.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.166 kcal (2) G-P(sol) polarization free energy of solvation -29.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds