Wall clock time and date at job start Mon Mar 30 2020 02:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86809 * 119.99924 * 2 1 4 4 H 1.48499 * 109.47295 * 270.00073 * 3 2 1 5 5 H 1.48499 * 109.46881 * 30.00152 * 3 2 1 6 6 H 1.48499 * 109.46836 * 150.00220 * 3 2 1 7 7 C 1.37879 * 120.00234 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00098 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99780 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.46764 * 179.97438 * 9 7 2 11 11 C 1.46909 * 110.99771 * 180.02562 * 10 9 7 12 12 H 1.08995 * 110.01381 * 44.71742 * 11 10 9 13 13 C 1.54750 * 110.01051 * 283.33399 * 11 10 9 14 14 C 1.54892 * 103.96231 * 217.12878 * 13 11 10 15 15 C 1.54885 * 102.91726 * 37.92000 * 14 13 11 16 16 C 1.53869 * 110.03000 * 166.11150 * 11 10 9 17 17 H 1.09002 * 110.03171 * 238.56312 * 16 11 10 18 18 C 1.53001 * 110.07651 * 359.97438 * 16 11 10 19 19 N 1.46904 * 109.46905 * 179.42637 * 18 16 11 20 20 H 0.97001 * 120.00227 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47327 * 60.00242 * 9 7 2 22 22 H 1.09000 * 109.47180 * 299.99914 * 9 7 2 23 23 H 1.00906 * 111.00060 * 303.94759 * 10 9 7 24 24 H 1.09001 * 110.69582 * 98.47648 * 13 11 10 25 25 H 1.09005 * 110.50376 * 335.67813 * 13 11 10 26 26 H 1.09004 * 110.75531 * 279.51445 * 14 13 11 27 27 H 1.09000 * 110.75921 * 156.33347 * 14 13 11 28 28 H 1.08999 * 110.48443 * 80.64081 * 15 14 13 29 29 H 1.09000 * 110.48843 * 203.15829 * 15 14 13 30 30 H 1.08995 * 109.46862 * 299.42000 * 18 16 11 31 31 H 1.09000 * 109.46870 * 59.42632 * 18 16 11 32 32 H 1.00895 * 110.99392 * 180.02562 * 19 18 16 33 33 H 1.00895 * 110.99549 * 303.94784 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2057 -3.6157 -0.0027 11 6 1.5054 -4.9071 -0.0045 12 1 0.6881 -4.8873 -0.7253 13 6 0.9577 -5.2144 1.4099 14 6 1.1479 -6.7443 1.5600 15 6 2.5057 -6.9949 0.8582 16 6 2.4879 -6.0389 -0.3525 17 1 2.1469 -6.5691 -1.2417 18 6 3.8869 -5.4660 -0.5885 19 7 4.8162 -6.5585 -0.9060 20 1 -0.4850 0.8400 0.0004 21 1 0.6247 -2.5564 -0.8920 22 1 0.6240 -2.5575 0.8880 23 1 2.8406 -3.5479 -0.7841 24 1 -0.0981 -4.9526 1.4794 25 1 1.5343 -4.6823 2.1665 26 1 0.3468 -7.2845 1.0555 27 1 1.1989 -7.0259 2.6118 28 1 3.3314 -6.7491 1.5261 29 1 2.5789 -8.0310 0.5278 30 1 3.8556 -4.7624 -1.4203 31 1 4.2250 -4.9510 0.3107 32 1 5.7478 -6.2056 -1.0659 33 1 4.8146 -7.2574 -0.1784 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084218321.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:40 Heat of formation + Delta-G solvation = -36.553751 kcal Electronic energy + Delta-G solvation = -12964.326333 eV Core-core repulsion = 10829.965937 eV Total energy + Delta-G solvation = -2134.360396 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.08664 -36.05147 -34.89379 -34.01964 -29.97340 -29.19283 -26.91791 -24.57275 -23.76942 -21.44197 -19.85205 -18.56289 -17.17256 -16.96242 -16.50806 -16.03600 -15.77168 -15.00337 -14.55698 -14.33047 -13.99171 -13.50892 -13.34551 -12.92735 -12.72982 -12.27577 -12.13104 -11.92827 -11.69333 -11.66886 -11.46190 -11.42565 -11.18493 -10.67534 -9.59174 -9.07538 -8.24030 -6.35616 1.39176 1.41160 1.52879 2.38342 3.09031 3.45077 3.60513 3.71765 3.92981 4.14009 4.44465 4.47283 4.54780 4.63465 4.72005 4.87250 4.94060 5.04660 5.10009 5.13636 5.18326 5.27592 5.30690 5.40209 5.52425 5.62489 6.02382 6.27287 6.45600 6.67897 6.74128 6.88684 7.35558 8.87745 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.045574 B = 0.008367 C = 0.007379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.239965 B = 3345.777312 C = 3793.422377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.974 3.026 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.536 4.536 8 H 0.064 0.936 9 C 0.209 3.791 10 N -0.677 5.677 11 C 0.076 3.924 12 H 0.014 0.986 13 C -0.114 4.114 14 C -0.114 4.114 15 C -0.105 4.105 16 C -0.081 4.081 17 H 0.074 0.926 18 C 0.078 3.922 19 N -0.851 5.851 20 H 0.265 0.735 21 H -0.047 1.047 22 H 0.001 0.999 23 H 0.333 0.667 24 H 0.044 0.956 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.066 0.934 29 H 0.086 0.914 30 H 0.055 0.945 31 H 0.032 0.968 32 H 0.348 0.652 33 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.582 -12.947 1.233 14.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.798 3.202 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.574 4.574 8 H 0.082 0.918 9 C 0.081 3.919 10 N -0.310 5.310 11 C -0.034 4.034 12 H 0.032 0.968 13 C -0.152 4.152 14 C -0.152 4.152 15 C -0.143 4.143 16 C -0.100 4.100 17 H 0.092 0.908 18 C -0.053 4.053 19 N -0.382 5.382 20 H 0.074 0.926 21 H -0.030 1.030 22 H 0.019 0.981 23 H 0.153 0.847 24 H 0.062 0.938 25 H 0.076 0.924 26 H 0.092 0.908 27 H 0.099 0.901 28 H 0.084 0.916 29 H 0.105 0.895 30 H 0.073 0.927 31 H 0.051 0.949 32 H 0.160 0.840 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 6.059 -12.942 1.271 14.346 hybrid contribution -0.054 1.529 -0.152 1.538 sum 6.005 -11.413 1.119 12.945 Atomic orbital electron populations 1.70099 1.07874 1.27998 1.51529 1.25987 0.95800 1.03481 0.94569 0.85316 0.78499 0.77872 0.78505 1.19653 1.20645 1.18800 1.21553 0.93760 0.91471 1.50600 0.91770 1.19198 0.90721 0.89120 0.92855 1.60916 1.20020 1.01161 1.48918 1.22367 0.94666 0.89904 0.96510 0.96823 1.22446 0.99142 0.97488 0.96103 1.22437 0.97821 0.93615 1.01325 1.22313 0.97378 0.99132 0.95429 1.21796 0.94097 0.94842 0.99251 0.90752 1.21567 0.92098 0.92666 0.99003 1.58752 1.12621 1.15463 1.51366 0.92620 1.02973 0.98112 0.84664 0.93754 0.92356 0.90839 0.90147 0.91568 0.89506 0.92664 0.94937 0.83953 0.84047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.71 13.29 21.45 0.28 -57.43 16 2 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 3 Si 0.97 44.93 29.54 68.60 2.03 46.95 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 6 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.54 -31.29 9.32 25.60 0.24 -31.05 16 8 H 0.06 3.62 7.81 -2.91 -0.02 3.60 16 9 C 0.21 11.61 5.27 85.56 0.45 12.06 16 10 N -0.68 -29.96 5.37 -490.96 -2.63 -32.59 16 11 C 0.08 2.84 3.22 45.80 0.15 2.99 16 12 H 0.01 0.56 7.99 -2.39 -0.02 0.54 16 13 C -0.11 -3.91 5.97 31.84 0.19 -3.72 16 14 C -0.11 -2.80 6.89 31.88 0.22 -2.58 16 15 C -0.10 -2.39 5.35 31.67 0.17 -2.22 16 16 C -0.08 -2.30 3.19 -10.07 -0.03 -2.33 16 17 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 18 C 0.08 2.17 4.92 86.30 0.42 2.60 16 19 N -0.85 -18.54 9.62 -186.71 -1.80 -20.33 16 20 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 21 H -0.05 -2.87 8.10 -2.39 -0.02 -2.89 16 22 H 0.00 0.05 7.72 -2.39 -0.02 0.03 16 23 H 0.33 14.11 6.06 -89.69 -0.54 13.56 16 24 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.06 2.20 8.06 -2.38 -0.02 2.18 16 26 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 27 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.07 1.48 7.77 -2.39 -0.02 1.46 16 29 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.05 1.71 6.67 -2.39 -0.02 1.69 16 31 H 0.03 1.00 7.77 -2.39 -0.02 0.98 16 32 H 0.35 6.52 9.08 -89.70 -0.81 5.71 16 33 H 0.35 6.34 7.94 -89.70 -0.71 5.63 16 Total: -1.00 -65.03 262.70 -0.82 -65.85 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: -0.97 Total: 21.36 kcal Atomic # 6 Polarization: -26.08 SS G_CDS: 2.27 Total: -23.81 kcal Atomic # 7 Polarization: -106.21 SS G_CDS: -4.15 Total: -110.35 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Total: -65.03 -0.82 -65.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084218321.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.295 kcal (2) G-P(sol) polarization free energy of solvation -65.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds