Wall clock time and date at job start Mon Mar 30 2020 02:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00188 * 2 1 4 4 H 1.48497 * 109.47308 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47138 * 300.00317 * 3 2 1 6 6 H 1.48506 * 109.47072 * 59.99766 * 3 2 1 7 7 C 1.37880 * 120.00011 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00158 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99764 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46931 * 179.97438 * 9 7 2 11 11 C 1.46900 * 110.99996 * 180.02562 * 10 9 7 12 12 H 1.09003 * 110.01607 * 34.94432 * 11 10 9 13 13 C 1.53869 * 110.03244 * 273.54583 * 11 10 9 14 14 C 1.54270 * 106.63967 * 240.69040 * 13 11 10 15 15 C 1.54961 * 104.16191 * 336.44607 * 14 13 11 16 16 C 1.54268 * 110.03156 * 156.37640 * 11 10 9 17 17 H 1.09001 * 110.48482 * 24.21949 * 16 11 10 18 18 C 1.52998 * 110.48927 * 261.70503 * 16 11 10 19 19 N 1.46902 * 109.47297 * 175.00084 * 18 16 11 20 20 H 0.97006 * 120.00106 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.47193 * 60.00205 * 9 7 2 22 22 H 1.08999 * 109.47318 * 299.99708 * 9 7 2 23 23 H 1.00901 * 111.00168 * 303.95129 * 10 9 7 24 24 H 1.09002 * 110.03268 * 0.02562 * 13 11 10 25 25 H 1.08995 * 110.03391 * 121.38432 * 13 11 10 26 26 H 1.08997 * 110.48585 * 95.09409 * 14 13 11 27 27 H 1.09002 * 110.48442 * 217.73292 * 14 13 11 28 28 H 1.09001 * 110.71970 * 279.57802 * 15 14 13 29 29 H 1.08998 * 110.76825 * 156.22170 * 15 14 13 30 30 H 1.09002 * 109.47359 * 295.00334 * 18 16 11 31 31 H 1.09000 * 109.46823 * 55.00290 * 18 16 11 32 32 H 1.00900 * 111.00359 * 180.02562 * 19 18 16 33 33 H 1.00908 * 110.99693 * 303.95685 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5052 -4.9071 -0.0001 12 1 0.5896 -4.8346 -0.5870 13 6 1.1749 -5.3282 1.4425 14 6 1.9003 -6.6672 1.6889 15 6 2.0983 -7.2579 0.2701 16 6 2.4208 -6.0044 -0.5809 17 1 3.4687 -5.7261 -0.4681 18 6 2.0899 -6.2539 -2.0537 19 7 3.0499 -7.2134 -2.6156 20 1 -0.4850 0.8401 -0.0004 21 1 0.6246 -2.5571 -0.8897 22 1 0.6240 -2.5567 0.8903 23 1 2.8404 -3.5487 -0.7809 24 1 1.5338 -4.5742 2.1431 25 1 0.0989 -5.4602 1.5558 26 1 2.8640 -6.4963 2.1687 27 1 1.2830 -7.3294 2.2960 28 1 1.1836 -7.7369 -0.0793 29 1 2.9325 -7.9593 0.2563 30 1 1.0812 -6.6588 -2.1359 31 1 2.1504 -5.3149 -2.6037 32 1 2.8528 -7.3946 -3.5884 33 1 3.9979 -6.8900 -2.4932 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084218324.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:41 Heat of formation + Delta-G solvation = -22.505198 kcal Electronic energy + Delta-G solvation = -12827.990693 eV Core-core repulsion = 10694.239487 eV Total energy + Delta-G solvation = -2133.751205 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.54781 -34.47677 -33.63677 -31.99729 -28.62415 -27.60225 -25.31272 -23.02803 -21.70630 -19.90290 -19.18285 -16.56180 -15.70891 -15.49592 -14.66459 -14.35414 -14.09846 -13.68497 -13.38578 -13.12697 -12.33350 -11.88489 -11.43595 -11.21698 -10.85853 -10.66859 -10.62857 -10.57325 -10.48656 -10.30901 -10.02405 -9.77623 -9.11155 -8.64847 -8.48211 -7.25989 -6.02867 -4.04714 3.30473 3.37717 3.42861 4.42854 4.55195 4.94182 5.00848 5.12485 5.33019 5.46596 5.56729 5.67598 5.78523 5.91910 5.95202 6.04444 6.13361 6.30354 6.39734 6.45921 6.64954 6.71044 6.82082 7.12362 7.32368 7.42042 7.44642 7.81377 8.16092 8.43466 8.65542 9.05447 9.60312 11.08281 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.046416 B = 0.007730 C = 0.007120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.101097 B = 3621.475966 C = 3931.383753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.513 4.513 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.683 5.683 11 C 0.087 3.913 12 H 0.035 0.965 13 C -0.114 4.114 14 C -0.123 4.123 15 C -0.102 4.102 16 C -0.091 4.091 17 H 0.079 0.921 18 C 0.066 3.934 19 N -0.849 5.849 20 H 0.260 0.740 21 H -0.016 1.016 22 H 0.028 0.972 23 H 0.325 0.675 24 H 0.076 0.924 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.026 0.974 32 H 0.337 0.663 33 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.801 -12.244 -2.109 12.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.552 4.552 8 H 0.080 0.920 9 C 0.067 3.933 10 N -0.313 5.313 11 C -0.024 4.024 12 H 0.053 0.947 13 C -0.152 4.152 14 C -0.161 4.161 15 C -0.140 4.140 16 C -0.111 4.111 17 H 0.097 0.903 18 C -0.065 4.065 19 N -0.378 5.378 20 H 0.070 0.930 21 H 0.002 0.998 22 H 0.046 0.954 23 H 0.142 0.858 24 H 0.095 0.905 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.045 0.955 32 H 0.148 0.852 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.418 -12.602 -0.877 13.087 hybrid contribution 0.206 1.813 -1.590 2.420 sum 3.624 -10.789 -2.467 11.646 Atomic orbital electron populations 1.69976 1.06081 1.26629 1.51072 1.24999 0.94871 0.99367 0.95402 0.86444 0.80065 0.83405 0.77506 1.19677 1.21122 1.20968 1.21251 0.93526 0.90337 1.50094 0.91979 1.19586 0.90628 0.87443 0.95654 1.60857 1.20926 1.01094 1.48438 1.22108 0.95019 0.90065 0.95237 0.94657 1.22161 0.98917 0.96710 0.97409 1.22367 1.00285 0.96639 0.96804 1.22348 1.00877 0.96360 0.94434 1.22177 1.00324 0.95491 0.93078 0.90300 1.21886 0.96259 0.93360 0.94984 1.58765 1.06630 1.49955 1.22458 0.92994 0.99838 0.95360 0.85813 0.90491 0.92882 0.91902 0.92498 0.92048 0.91830 0.91237 0.95530 0.85189 0.84931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.17 13.29 55.43 0.74 -26.43 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.51 -14.76 9.32 -34.44 -0.32 -15.08 16 8 H 0.06 1.76 7.81 -52.48 -0.41 1.35 16 9 C 0.19 5.16 5.26 -4.97 -0.03 5.14 16 10 N -0.68 -14.83 6.14 -106.81 -0.66 -15.49 16 11 C 0.09 1.58 2.81 -66.60 -0.19 1.39 16 12 H 0.04 0.69 7.53 -51.93 -0.39 0.30 16 13 C -0.11 -1.95 6.48 -25.61 -0.17 -2.11 16 14 C -0.12 -1.73 6.84 -25.03 -0.17 -1.90 16 15 C -0.10 -1.37 6.23 -24.70 -0.15 -1.53 16 16 C -0.09 -1.35 2.45 -88.96 -0.22 -1.57 16 17 H 0.08 1.20 7.98 -51.93 -0.41 0.79 16 18 C 0.07 0.88 6.07 -3.82 -0.02 0.86 16 19 N -0.85 -9.47 9.51 -10.37 -0.10 -9.57 16 20 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 21 H -0.02 -0.46 8.07 -51.93 -0.42 -0.88 16 22 H 0.03 0.81 8.10 -51.93 -0.42 0.39 16 23 H 0.33 6.78 8.34 -39.29 -0.33 6.45 16 24 H 0.08 1.48 7.92 -51.93 -0.41 1.07 16 25 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.81 7.97 -51.93 -0.41 0.40 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.94 8.03 -51.93 -0.42 0.52 16 31 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.34 3.16 9.08 -39.29 -0.36 2.80 16 33 H 0.34 3.48 8.99 -39.29 -0.35 3.13 16 LS Contribution 269.56 15.07 4.06 4.06 Total: -1.00 -30.01 269.56 -7.92 -37.93 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -5.58 Total: 5.93 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: -1.36 Total: -13.31 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: -0.02 Total: -51.49 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.01 -7.92 -37.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084218324.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.429 kcal (2) G-P(sol) polarization free energy of solvation -30.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds