Wall clock time and date at job start Mon Mar 30 2020 02:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00188 * 2 1 4 4 H 1.48497 * 109.47308 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47138 * 300.00317 * 3 2 1 6 6 H 1.48506 * 109.47072 * 59.99766 * 3 2 1 7 7 C 1.37880 * 120.00011 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00158 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99764 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46931 * 179.97438 * 9 7 2 11 11 C 1.46900 * 110.99996 * 180.02562 * 10 9 7 12 12 H 1.09003 * 110.01607 * 34.94432 * 11 10 9 13 13 C 1.53869 * 110.03244 * 273.54583 * 11 10 9 14 14 C 1.54270 * 106.63967 * 240.69040 * 13 11 10 15 15 C 1.54961 * 104.16191 * 336.44607 * 14 13 11 16 16 C 1.54268 * 110.03156 * 156.37640 * 11 10 9 17 17 H 1.09001 * 110.48482 * 24.21949 * 16 11 10 18 18 C 1.52998 * 110.48927 * 261.70503 * 16 11 10 19 19 N 1.46902 * 109.47297 * 175.00084 * 18 16 11 20 20 H 0.97006 * 120.00106 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.47193 * 60.00205 * 9 7 2 22 22 H 1.08999 * 109.47318 * 299.99708 * 9 7 2 23 23 H 1.00901 * 111.00168 * 303.95129 * 10 9 7 24 24 H 1.09002 * 110.03268 * 0.02562 * 13 11 10 25 25 H 1.08995 * 110.03391 * 121.38432 * 13 11 10 26 26 H 1.08997 * 110.48585 * 95.09409 * 14 13 11 27 27 H 1.09002 * 110.48442 * 217.73292 * 14 13 11 28 28 H 1.09001 * 110.71970 * 279.57802 * 15 14 13 29 29 H 1.08998 * 110.76825 * 156.22170 * 15 14 13 30 30 H 1.09002 * 109.47359 * 295.00334 * 18 16 11 31 31 H 1.09000 * 109.46823 * 55.00290 * 18 16 11 32 32 H 1.00900 * 111.00359 * 180.02562 * 19 18 16 33 33 H 1.00908 * 110.99693 * 303.95685 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5052 -4.9071 -0.0001 12 1 0.5896 -4.8346 -0.5870 13 6 1.1749 -5.3282 1.4425 14 6 1.9003 -6.6672 1.6889 15 6 2.0983 -7.2579 0.2701 16 6 2.4208 -6.0044 -0.5809 17 1 3.4687 -5.7261 -0.4681 18 6 2.0899 -6.2539 -2.0537 19 7 3.0499 -7.2134 -2.6156 20 1 -0.4850 0.8401 -0.0004 21 1 0.6246 -2.5571 -0.8897 22 1 0.6240 -2.5567 0.8903 23 1 2.8404 -3.5487 -0.7809 24 1 1.5338 -4.5742 2.1431 25 1 0.0989 -5.4602 1.5558 26 1 2.8640 -6.4963 2.1687 27 1 1.2830 -7.3294 2.2960 28 1 1.1836 -7.7369 -0.0793 29 1 2.9325 -7.9593 0.2563 30 1 1.0812 -6.6588 -2.1359 31 1 2.1504 -5.3149 -2.6037 32 1 2.8528 -7.3946 -3.5884 33 1 3.9979 -6.8900 -2.4932 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084218324.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:41 Heat of formation + Delta-G solvation = -44.994138 kcal Electronic energy + Delta-G solvation = -12828.965886 eV Core-core repulsion = 10694.239487 eV Total energy + Delta-G solvation = -2134.726399 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.89974 -36.15118 -34.99000 -33.96218 -29.89501 -29.30388 -27.05342 -24.41735 -23.53548 -21.15042 -20.63035 -18.61805 -17.06220 -16.86768 -16.62348 -15.56481 -15.34180 -15.10629 -14.81702 -14.63249 -14.35343 -13.44947 -13.22716 -12.90414 -12.69519 -12.28452 -12.19409 -11.85416 -11.77933 -11.67553 -11.57197 -11.33241 -11.17544 -10.69479 -9.60655 -9.13055 -8.25143 -6.36851 1.38852 1.39989 1.53919 2.37884 3.07964 3.43485 3.56037 3.76604 3.97874 4.05651 4.35619 4.49618 4.55729 4.61382 4.70002 4.82648 4.95493 5.02536 5.04947 5.17982 5.23699 5.29678 5.32502 5.41669 5.55739 5.63261 6.02348 6.18720 6.45526 6.61019 6.73390 6.88244 7.34576 8.86821 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.046416 B = 0.007730 C = 0.007120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.101097 B = 3621.475966 C = 3931.383753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.975 3.025 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.536 4.536 8 H 0.064 0.936 9 C 0.211 3.789 10 N -0.679 5.679 11 C 0.081 3.919 12 H 0.018 0.982 13 C -0.117 4.117 14 C -0.114 4.114 15 C -0.093 4.093 16 C -0.082 4.082 17 H 0.078 0.922 18 C 0.072 3.928 19 N -0.844 5.844 20 H 0.265 0.735 21 H -0.045 1.045 22 H -0.002 1.002 23 H 0.331 0.669 24 H 0.049 0.951 25 H 0.053 0.947 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.011 0.989 32 H 0.349 0.651 33 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.156 -12.981 -2.283 14.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.799 3.201 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.575 4.575 8 H 0.083 0.917 9 C 0.083 3.917 10 N -0.309 5.309 11 C -0.030 4.030 12 H 0.036 0.964 13 C -0.155 4.155 14 C -0.152 4.152 15 C -0.131 4.131 16 C -0.101 4.101 17 H 0.096 0.904 18 C -0.059 4.059 19 N -0.374 5.374 20 H 0.074 0.926 21 H -0.027 1.027 22 H 0.016 0.984 23 H 0.148 0.852 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.096 0.904 28 H 0.085 0.915 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.029 0.971 32 H 0.162 0.838 33 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 4.789 -13.370 -1.062 14.241 hybrid contribution -0.253 2.001 -1.537 2.535 sum 4.537 -11.369 -2.598 12.514 Atomic orbital electron populations 1.70106 1.07878 1.27976 1.51548 1.25992 0.95808 1.03507 0.94522 0.85257 0.78912 0.78130 0.77824 1.18599 1.20184 1.20309 1.21598 0.93806 0.91483 1.50579 0.91749 1.19196 0.90606 0.89055 0.92808 1.60761 1.20131 1.01366 1.48659 1.22269 0.94994 0.89499 0.96255 0.96391 1.22162 0.99427 0.98039 0.95870 1.22327 1.00300 0.94823 0.97725 1.22310 1.01816 0.95649 0.93279 1.22074 0.99147 0.94753 0.94143 0.90386 1.21730 0.96916 0.93257 0.94004 1.58710 1.06558 1.48709 1.23424 0.92588 1.02705 0.98386 0.85206 0.93165 0.92830 0.91596 0.90365 0.91453 0.90107 0.91285 0.97069 0.83805 0.84146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.59 13.29 21.45 0.28 -57.30 16 2 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 3 Si 0.97 44.88 29.54 68.60 2.03 46.91 16 4 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 5 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 6 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.54 -31.38 9.32 25.60 0.24 -31.14 16 8 H 0.06 3.65 7.81 -2.91 -0.02 3.63 16 9 C 0.21 11.73 5.26 85.56 0.45 12.18 16 10 N -0.68 -30.21 6.14 -491.83 -3.02 -33.24 16 11 C 0.08 2.97 2.81 45.64 0.13 3.10 16 12 H 0.02 0.73 7.53 -2.39 -0.02 0.71 16 13 C -0.12 -4.02 6.48 31.32 0.20 -3.81 16 14 C -0.11 -2.97 6.84 31.70 0.22 -2.75 16 15 C -0.09 -2.24 6.23 31.91 0.20 -2.05 16 16 C -0.08 -2.31 2.45 -9.72 -0.02 -2.33 16 17 H 0.08 2.25 7.98 -2.39 -0.02 2.23 16 18 C 0.07 1.84 6.07 86.30 0.52 2.37 16 19 N -0.84 -16.88 9.51 -186.71 -1.78 -18.65 16 20 H 0.27 15.23 8.31 -92.70 -0.77 14.46 16 21 H -0.04 -2.68 8.07 -2.38 -0.02 -2.70 16 22 H 0.00 -0.12 8.10 -2.39 -0.02 -0.14 16 23 H 0.33 13.97 8.34 -89.69 -0.75 13.22 16 24 H 0.05 1.98 7.92 -2.39 -0.02 1.97 16 25 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.07 1.58 7.97 -2.39 -0.02 1.56 16 29 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.07 1.78 8.03 -2.39 -0.02 1.76 16 31 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.35 5.75 9.08 -89.69 -0.81 4.94 16 33 H 0.35 6.28 8.99 -89.69 -0.81 5.47 16 Total: -1.00 -64.76 269.56 -1.36 -66.12 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: -1.27 Total: 20.14 kcal Atomic # 6 Polarization: -26.38 SS G_CDS: 2.40 Total: -23.98 kcal Atomic # 7 Polarization: -104.68 SS G_CDS: -4.51 Total: -109.19 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -64.76 -1.36 -66.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084218324.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.131 kcal (2) G-P(sol) polarization free energy of solvation -64.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds