Wall clock time and date at job start Mon Mar 30 2020 02:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48500 * 109.47353 * 269.99835 * 3 2 1 5 5 H 1.48494 * 109.47031 * 30.00382 * 3 2 1 6 6 H 1.48504 * 109.46680 * 150.00084 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 0.27482 * 7 2 1 9 9 C 1.50706 * 119.99394 * 179.97438 * 7 2 1 10 10 N 1.46902 * 109.46577 * 180.02562 * 9 7 2 11 11 C 1.46905 * 110.99800 * 180.02562 * 10 9 7 12 12 H 1.09005 * 110.01656 * 326.39290 * 11 10 9 13 13 C 1.54266 * 110.03324 * 87.83092 * 11 10 9 14 14 C 1.54890 * 104.19458 * 95.67327 * 13 11 10 15 15 C 1.54882 * 102.74661 * 37.94667 * 14 13 11 16 16 C 1.53863 * 110.03308 * 204.99717 * 11 10 9 17 17 H 1.09002 * 110.03494 * 359.97438 * 16 11 10 18 18 C 1.53005 * 110.03127 * 121.43162 * 16 11 10 19 19 N 1.46899 * 109.47147 * 185.00110 * 18 16 11 20 20 H 0.97005 * 119.99656 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 22 22 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 23 23 H 1.00898 * 110.99915 * 303.94920 * 10 9 7 24 24 H 1.08996 * 110.49180 * 214.35837 * 13 11 10 25 25 H 1.09013 * 110.48714 * 336.99624 * 13 11 10 26 26 H 1.08995 * 110.75748 * 279.62723 * 14 13 11 27 27 H 1.09008 * 110.91149 * 156.32968 * 14 13 11 28 28 H 1.09004 * 110.48443 * 203.37544 * 15 14 13 29 29 H 1.09005 * 110.48973 * 80.73230 * 15 14 13 30 30 H 1.08996 * 109.47007 * 304.99785 * 18 16 11 31 31 H 1.08993 * 109.47284 * 65.00315 * 18 16 11 32 32 H 1.00906 * 111.00353 * 56.04547 * 19 18 16 33 33 H 1.00905 * 111.00117 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0054 9 6 3.5115 -1.1942 -0.0011 10 7 4.0010 -2.5792 -0.0022 11 6 5.4695 -2.6185 -0.0022 12 1 5.8653 -1.7753 -0.5684 13 6 5.9992 -2.5790 1.4461 14 6 6.2290 -4.0676 1.8072 15 6 6.7728 -4.6603 0.4837 16 6 5.9614 -3.9418 -0.6141 17 1 5.1105 -4.5551 -0.9107 18 6 6.8531 -3.6597 -1.8251 19 7 7.2178 -4.9279 -2.4705 20 1 -0.4850 0.8401 0.0004 21 1 3.8745 -0.6801 -0.8911 22 1 3.8751 -0.6805 0.8889 23 1 3.6258 -3.0959 0.7790 24 1 6.9369 -2.0255 1.4945 25 1 5.2584 -2.1350 2.1113 26 1 5.2910 -4.5462 2.0882 27 1 6.9651 -4.1652 2.6053 28 1 6.5967 -5.7353 0.4463 29 1 7.8356 -4.4429 0.3765 30 1 6.3139 -3.0327 -2.5351 31 1 7.7567 -3.1450 -1.4989 32 1 6.3952 -5.4543 -2.7244 33 1 7.8069 -4.7684 -3.2741 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084218327.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:43 Heat of formation + Delta-G solvation = -18.345862 kcal Electronic energy + Delta-G solvation = -12888.288572 eV Core-core repulsion = 10754.717729 eV Total energy + Delta-G solvation = -2133.570843 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.74713 -34.69840 -33.48858 -31.98999 -28.67588 -28.04309 -25.68356 -22.94413 -21.33892 -20.07676 -19.42000 -16.84754 -15.89746 -15.31760 -14.74116 -14.45421 -14.09159 -13.70703 -13.49686 -13.18154 -12.54976 -11.98945 -11.84216 -11.25955 -11.12224 -10.77389 -10.66672 -10.60755 -10.39938 -10.26919 -10.21786 -9.76050 -9.27698 -8.63045 -8.59283 -7.41571 -6.06223 -4.03931 3.27909 3.35075 3.37639 4.41501 4.54324 4.84464 4.95189 5.04225 5.26591 5.42102 5.43488 5.63579 5.78388 5.84656 5.91108 5.97789 6.03269 6.13414 6.25299 6.28770 6.42156 6.56885 6.70966 6.82230 7.05889 7.15164 7.44918 7.62439 7.94998 8.37848 8.66456 9.02134 9.56047 11.07148 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.044875 B = 0.008277 C = 0.007905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.802455 B = 3382.035740 C = 3541.405563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.516 4.516 8 H 0.079 0.921 9 C 0.164 3.836 10 N -0.673 5.673 11 C 0.084 3.916 12 H 0.069 0.931 13 C -0.154 4.154 14 C -0.126 4.126 15 C -0.104 4.104 16 C -0.081 4.081 17 H 0.082 0.918 18 C 0.069 3.931 19 N -0.851 5.851 20 H 0.263 0.737 21 H 0.019 0.981 22 H -0.016 1.016 23 H 0.336 0.664 24 H 0.060 0.940 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.029 0.971 31 H 0.066 0.934 32 H 0.340 0.660 33 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.186 -6.411 -0.441 15.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.554 4.554 8 H 0.097 0.903 9 C 0.036 3.964 10 N -0.302 5.302 11 C -0.028 4.028 12 H 0.087 0.913 13 C -0.194 4.194 14 C -0.163 4.163 15 C -0.142 4.142 16 C -0.101 4.101 17 H 0.100 0.900 18 C -0.061 4.061 19 N -0.380 5.380 20 H 0.073 0.927 21 H 0.037 0.963 22 H 0.002 0.998 23 H 0.154 0.846 24 H 0.079 0.921 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.047 0.953 31 H 0.084 0.916 32 H 0.152 0.848 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 14.310 -6.509 -0.441 15.727 hybrid contribution 0.023 1.707 0.038 1.708 sum 14.333 -4.802 -0.403 15.121 Atomic orbital electron populations 1.69905 1.06158 1.26846 1.51076 1.24913 0.94747 0.98944 0.94764 0.86827 0.80288 0.83875 0.78554 1.20208 1.21198 1.19239 1.21088 0.89058 0.94774 1.50486 0.90341 1.20013 0.96487 0.85317 0.94588 1.60605 1.03913 1.16362 1.49358 1.22196 0.90182 0.96585 0.93794 0.91280 1.23092 1.01102 0.96694 0.98501 1.22497 1.00639 0.95814 0.97366 1.22268 0.99093 0.99206 0.93612 1.21832 0.97353 0.96683 0.94219 0.89969 1.21892 0.98290 0.90349 0.95614 1.58770 1.23856 1.21119 1.34217 0.92671 0.96264 0.99803 0.84604 0.92134 0.91548 0.91619 0.92300 0.92077 0.91970 0.95322 0.91583 0.84775 0.85313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.93 13.96 55.43 0.77 -27.16 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 7 C -0.52 -14.93 9.87 -34.44 -0.34 -15.27 16 8 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 9 C 0.16 4.02 4.33 -4.97 -0.02 4.00 16 10 N -0.67 -13.98 6.10 -106.80 -0.65 -14.63 16 11 C 0.08 1.42 2.89 -66.60 -0.19 1.23 16 12 H 0.07 1.21 7.34 -51.93 -0.38 0.83 16 13 C -0.15 -2.34 6.24 -25.07 -0.16 -2.49 16 14 C -0.13 -1.65 6.91 -24.74 -0.17 -1.82 16 15 C -0.10 -1.34 6.19 -25.08 -0.16 -1.50 16 16 C -0.08 -1.17 2.88 -89.50 -0.26 -1.43 16 17 H 0.08 1.30 7.92 -51.93 -0.41 0.89 16 18 C 0.07 0.90 5.84 -3.82 -0.02 0.87 16 19 N -0.85 -9.40 9.44 -10.37 -0.10 -9.50 16 20 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 21 H 0.02 0.48 7.49 -51.93 -0.39 0.09 16 22 H -0.02 -0.39 7.01 -51.93 -0.36 -0.75 16 23 H 0.34 6.87 8.42 -39.29 -0.33 6.54 16 24 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.07 1.10 7.81 -51.92 -0.41 0.70 16 26 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.78 7.76 -51.93 -0.40 0.38 16 30 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.82 8.00 -51.93 -0.42 0.41 16 32 H 0.34 3.59 8.99 -39.29 -0.35 3.24 16 33 H 0.34 3.07 9.08 -39.29 -0.36 2.71 16 LS Contribution 265.26 15.07 4.00 4.00 Total: -1.00 -30.27 265.26 -7.58 -37.85 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -5.51 Total: 6.80 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: -1.41 Total: -14.51 kcal Atomic # 7 Polarization: -51.31 SS G_CDS: 0.02 Total: -51.28 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -30.27 -7.58 -37.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084218327.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.503 kcal (2) G-P(sol) polarization free energy of solvation -30.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds