Wall clock time and date at job start Mon Mar 30 2020 02:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48500 * 109.47353 * 269.99835 * 3 2 1 5 5 H 1.48494 * 109.47031 * 30.00382 * 3 2 1 6 6 H 1.48504 * 109.46680 * 150.00084 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 0.27482 * 7 2 1 9 9 C 1.50706 * 119.99394 * 179.97438 * 7 2 1 10 10 N 1.46902 * 109.46577 * 180.02562 * 9 7 2 11 11 C 1.46905 * 110.99800 * 180.02562 * 10 9 7 12 12 H 1.09005 * 110.01656 * 326.39290 * 11 10 9 13 13 C 1.54266 * 110.03324 * 87.83092 * 11 10 9 14 14 C 1.54890 * 104.19458 * 95.67327 * 13 11 10 15 15 C 1.54882 * 102.74661 * 37.94667 * 14 13 11 16 16 C 1.53863 * 110.03308 * 204.99717 * 11 10 9 17 17 H 1.09002 * 110.03494 * 359.97438 * 16 11 10 18 18 C 1.53005 * 110.03127 * 121.43162 * 16 11 10 19 19 N 1.46899 * 109.47147 * 185.00110 * 18 16 11 20 20 H 0.97005 * 119.99656 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 22 22 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 23 23 H 1.00898 * 110.99915 * 303.94920 * 10 9 7 24 24 H 1.08996 * 110.49180 * 214.35837 * 13 11 10 25 25 H 1.09013 * 110.48714 * 336.99624 * 13 11 10 26 26 H 1.08995 * 110.75748 * 279.62723 * 14 13 11 27 27 H 1.09008 * 110.91149 * 156.32968 * 14 13 11 28 28 H 1.09004 * 110.48443 * 203.37544 * 15 14 13 29 29 H 1.09005 * 110.48973 * 80.73230 * 15 14 13 30 30 H 1.08996 * 109.47007 * 304.99785 * 18 16 11 31 31 H 1.08993 * 109.47284 * 65.00315 * 18 16 11 32 32 H 1.00906 * 111.00353 * 56.04547 * 19 18 16 33 33 H 1.00905 * 111.00117 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0054 9 6 3.5115 -1.1942 -0.0011 10 7 4.0010 -2.5792 -0.0022 11 6 5.4695 -2.6185 -0.0022 12 1 5.8653 -1.7753 -0.5684 13 6 5.9992 -2.5790 1.4461 14 6 6.2290 -4.0676 1.8072 15 6 6.7728 -4.6603 0.4837 16 6 5.9614 -3.9418 -0.6141 17 1 5.1105 -4.5551 -0.9107 18 6 6.8531 -3.6597 -1.8251 19 7 7.2178 -4.9279 -2.4705 20 1 -0.4850 0.8401 0.0004 21 1 3.8745 -0.6801 -0.8911 22 1 3.8751 -0.6805 0.8889 23 1 3.6258 -3.0959 0.7790 24 1 6.9369 -2.0255 1.4945 25 1 5.2584 -2.1350 2.1113 26 1 5.2910 -4.5462 2.0882 27 1 6.9651 -4.1652 2.6053 28 1 6.5967 -5.7353 0.4463 29 1 7.8356 -4.4429 0.3765 30 1 6.3139 -3.0327 -2.5351 31 1 7.7567 -3.1450 -1.4989 32 1 6.3952 -5.4543 -2.7244 33 1 7.8069 -4.7684 -3.2741 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084218327.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:43 Heat of formation + Delta-G solvation = -41.679371 kcal Electronic energy + Delta-G solvation = -12889.300388 eV Core-core repulsion = 10754.717729 eV Total energy + Delta-G solvation = -2134.582660 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.00114 -36.21226 -34.91472 -33.90154 -30.00559 -29.52953 -27.25712 -24.21137 -23.14493 -21.31410 -20.69443 -18.94492 -17.16795 -16.61800 -16.34113 -15.76692 -15.41048 -15.15909 -14.92965 -14.49150 -14.45037 -13.73558 -13.24081 -12.90189 -12.66584 -12.23759 -11.96754 -11.86322 -11.73834 -11.71673 -11.58941 -11.39330 -11.33732 -10.83332 -9.55782 -9.08385 -8.32630 -6.37130 1.32318 1.33781 1.45076 2.31520 3.01315 3.37959 3.60653 3.79980 3.99168 4.13378 4.32607 4.50514 4.62071 4.67876 4.70318 4.78833 4.86009 4.92405 4.95960 5.08891 5.13783 5.24603 5.29255 5.42987 5.50545 5.60257 5.99968 6.24072 6.56730 6.63934 6.66650 6.77348 7.28139 8.84205 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.044875 B = 0.008277 C = 0.007905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.802455 B = 3382.035740 C = 3541.405563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.008 3.992 3 Si 0.951 3.049 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.251 1.251 7 C -0.530 4.530 8 H 0.036 0.964 9 C 0.177 3.823 10 N -0.681 5.681 11 C 0.079 3.921 12 H 0.064 0.936 13 C -0.152 4.152 14 C -0.121 4.121 15 C -0.094 4.094 16 C -0.076 4.076 17 H 0.065 0.935 18 C 0.075 3.925 19 N -0.848 5.848 20 H 0.268 0.732 21 H 0.019 0.981 22 H -0.014 1.014 23 H 0.335 0.665 24 H 0.077 0.923 25 H 0.048 0.952 26 H 0.058 0.942 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.014 0.986 31 H 0.075 0.925 32 H 0.343 0.657 33 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.706 -6.036 -0.313 17.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.190 4.190 3 Si 0.774 3.226 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.175 1.175 7 C -0.568 4.568 8 H 0.054 0.946 9 C 0.048 3.952 10 N -0.311 5.311 11 C -0.032 4.032 12 H 0.082 0.918 13 C -0.191 4.191 14 C -0.158 4.158 15 C -0.132 4.132 16 C -0.096 4.096 17 H 0.083 0.917 18 C -0.056 4.056 19 N -0.378 5.378 20 H 0.077 0.923 21 H 0.037 0.963 22 H 0.004 0.996 23 H 0.153 0.847 24 H 0.096 0.904 25 H 0.066 0.934 26 H 0.077 0.923 27 H 0.098 0.902 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.032 0.968 31 H 0.094 0.906 32 H 0.155 0.845 33 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 16.857 -6.161 -0.321 17.951 hybrid contribution -0.807 1.487 -0.019 1.692 sum 16.050 -4.675 -0.340 16.721 Atomic orbital electron populations 1.70057 1.08159 1.28244 1.52289 1.25892 0.95657 1.03317 0.94112 0.85660 0.79319 0.78378 0.79246 1.19088 1.20437 1.17485 1.21369 0.91512 0.93409 1.50491 0.94558 1.19733 0.93506 0.87518 0.94402 1.60533 1.06774 1.14178 1.49587 1.22340 0.87516 0.97879 0.95430 0.91791 1.23036 1.01192 0.98314 0.96563 1.22486 1.00997 0.94154 0.98209 1.22202 0.99238 0.99264 0.92481 1.21742 0.97320 0.95102 0.95430 0.91700 1.21776 0.98091 0.90988 0.94758 1.58736 1.24096 1.20003 1.34983 0.92317 0.96254 0.99600 0.84728 0.90392 0.93359 0.92347 0.90175 0.91463 0.90880 0.96783 0.90620 0.84477 0.83878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.99 13.96 21.45 0.30 -59.69 16 2 C 0.01 0.46 5.47 84.66 0.46 0.92 16 3 Si 0.95 44.68 27.47 68.60 1.88 46.57 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 6 H -0.25 -11.05 6.54 99.48 0.65 -10.39 16 7 C -0.53 -31.41 9.87 25.60 0.25 -31.16 16 8 H 0.04 2.39 8.06 -2.91 -0.02 2.36 16 9 C 0.18 8.66 4.33 85.56 0.37 9.03 16 10 N -0.68 -28.39 6.10 -491.82 -3.00 -31.40 16 11 C 0.08 2.58 2.89 45.63 0.13 2.71 16 12 H 0.06 2.14 7.34 -2.38 -0.02 2.13 16 13 C -0.15 -4.30 6.24 31.67 0.20 -4.10 16 14 C -0.12 -2.89 6.91 31.88 0.22 -2.67 16 15 C -0.09 -2.17 6.19 31.67 0.20 -1.98 16 16 C -0.08 -2.08 2.88 -10.07 -0.03 -2.11 16 17 H 0.06 2.01 7.92 -2.39 -0.02 1.99 16 18 C 0.07 1.79 5.84 86.30 0.50 2.30 16 19 N -0.85 -16.87 9.44 -186.72 -1.76 -18.63 16 20 H 0.27 15.74 8.31 -92.70 -0.77 14.97 16 21 H 0.02 0.95 7.49 -2.39 -0.02 0.93 16 22 H -0.01 -0.66 7.01 -2.39 -0.02 -0.68 16 23 H 0.34 13.95 8.42 -89.70 -0.76 13.20 16 24 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.05 1.54 7.81 -2.38 -0.02 1.52 16 26 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 28 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 29 H 0.07 1.56 7.76 -2.38 -0.02 1.55 16 30 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.08 1.68 8.00 -2.39 -0.02 1.66 16 32 H 0.34 6.65 8.99 -89.69 -0.81 5.85 16 33 H 0.35 5.55 9.08 -89.69 -0.81 4.73 16 Total: -1.00 -65.29 265.26 -1.60 -66.89 By element: Atomic # 1 Polarization: 24.64 SS G_CDS: -1.33 Total: 23.31 kcal Atomic # 6 Polarization: -29.36 SS G_CDS: 2.31 Total: -27.05 kcal Atomic # 7 Polarization: -105.25 SS G_CDS: -4.47 Total: -109.71 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.88 Total: 46.57 kcal Total: -65.29 -1.60 -66.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084218327.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.212 kcal (2) G-P(sol) polarization free energy of solvation -65.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds