Wall clock time and date at job start Mon Mar 30 2020 02:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 120.00267 * 2 1 4 4 H 1.48505 * 109.47083 * 269.99885 * 3 2 1 5 5 H 1.48502 * 109.47144 * 29.99660 * 3 2 1 6 6 H 1.48502 * 109.47376 * 149.99817 * 3 2 1 7 7 C 1.37879 * 120.00136 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00559 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99936 * 359.97438 * 7 2 1 10 10 N 1.46890 * 109.47438 * 180.02562 * 9 7 2 11 11 C 1.46897 * 111.00182 * 180.02562 * 10 9 7 12 12 H 1.08999 * 110.01732 * 314.41132 * 11 10 9 13 13 C 1.54263 * 110.07445 * 75.83262 * 11 10 9 14 14 C 1.54888 * 104.19966 * 142.91509 * 13 11 10 15 15 C 1.54882 * 102.74819 * 322.05787 * 14 13 11 16 16 C 1.53876 * 110.03423 * 193.01971 * 11 10 9 17 17 H 1.09002 * 110.03305 * 121.38036 * 16 11 10 18 18 C 1.53005 * 110.03062 * 359.95314 * 16 11 10 19 19 N 1.46909 * 109.47002 * 178.42907 * 18 16 11 20 20 H 0.96995 * 120.00112 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47100 * 60.00032 * 9 7 2 22 22 H 1.08999 * 109.47120 * 300.00796 * 9 7 2 23 23 H 1.00901 * 111.00364 * 56.04445 * 10 9 7 24 24 H 1.09009 * 110.48606 * 261.59579 * 13 11 10 25 25 H 1.09000 * 110.48529 * 24.23319 * 13 11 10 26 26 H 1.08994 * 110.75860 * 203.73921 * 14 13 11 27 27 H 1.09002 * 110.90888 * 80.44541 * 14 13 11 28 28 H 1.08998 * 110.48635 * 279.25985 * 15 14 13 29 29 H 1.09004 * 110.48535 * 156.61816 * 15 14 13 30 30 H 1.08997 * 109.46928 * 298.42316 * 18 16 11 31 31 H 1.08996 * 109.47004 * 58.42824 * 18 16 11 32 32 H 1.00900 * 110.99820 * 56.04516 * 19 18 16 33 33 H 1.00896 * 110.99496 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2055 -3.6157 0.0027 11 6 1.5052 -4.9070 0.0032 12 1 0.6971 -4.8929 0.7345 13 6 0.9415 -5.2043 -1.4016 14 6 1.1265 -6.7329 -1.5696 15 6 2.4934 -6.9887 -0.8878 16 6 2.4919 -6.0417 0.3299 17 1 2.1627 -6.5782 1.2198 18 6 3.8938 -5.4698 0.5508 19 7 4.8174 -6.5580 0.8985 20 1 -0.4850 0.8400 -0.0004 21 1 0.6240 -2.5575 -0.8880 22 1 0.6246 -2.5563 0.8919 23 1 2.8404 -3.5480 0.7840 24 1 -0.1148 -4.9399 -1.4527 25 1 1.5076 -4.6657 -2.1616 26 1 1.1643 -7.0038 -2.6247 27 1 0.3325 -7.2791 -1.0603 28 1 3.3102 -6.7384 -1.5648 29 1 2.5697 -8.0267 -0.5637 30 1 4.2349 -4.9815 -0.3620 31 1 3.8660 -4.7433 1.3629 32 1 4.8123 -7.2767 0.1903 33 1 5.7506 -6.2055 1.0499 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084218330.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:44 Heat of formation + Delta-G solvation = -14.312558 kcal Electronic energy + Delta-G solvation = -12964.103509 eV Core-core repulsion = 10830.707564 eV Total energy + Delta-G solvation = -2133.395946 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.75178 -34.26999 -33.63977 -32.04407 -28.59779 -27.59030 -25.13831 -23.34633 -21.74672 -20.19200 -18.42041 -16.53392 -15.85511 -15.54790 -14.70064 -14.52901 -14.30665 -13.78043 -13.08459 -12.53343 -12.27396 -12.24759 -11.41413 -11.22897 -10.83092 -10.74021 -10.63368 -10.48281 -10.36895 -10.29240 -10.12152 -9.76939 -9.11666 -8.54991 -8.44508 -7.23968 -6.01727 -4.03559 3.32362 3.38033 3.41686 4.43740 4.65413 4.93442 4.95809 5.16624 5.34100 5.44371 5.65412 5.70806 5.85443 5.87231 5.95571 6.11137 6.17107 6.24180 6.31936 6.45867 6.60011 6.62752 6.81476 7.27359 7.35645 7.46833 7.55483 7.81400 8.17000 8.43319 8.65927 9.06037 9.61250 11.09416 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.045469 B = 0.008376 C = 0.007382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.659986 B = 3342.101401 C = 3792.260225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.513 4.513 8 H 0.061 0.939 9 C 0.192 3.808 10 N -0.685 5.685 11 C 0.085 3.915 12 H 0.032 0.968 13 C -0.111 4.111 14 C -0.124 4.124 15 C -0.114 4.114 16 C -0.088 4.088 17 H 0.070 0.930 18 C 0.071 3.929 19 N -0.856 5.856 20 H 0.261 0.739 21 H 0.029 0.971 22 H -0.016 1.016 23 H 0.329 0.671 24 H 0.058 0.942 25 H 0.076 0.924 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.045 0.955 31 H 0.071 0.929 32 H 0.334 0.666 33 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.062 -12.073 -1.077 13.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.552 4.552 8 H 0.079 0.921 9 C 0.066 3.934 10 N -0.318 5.318 11 C -0.026 4.026 12 H 0.050 0.950 13 C -0.149 4.149 14 C -0.162 4.162 15 C -0.152 4.152 16 C -0.107 4.107 17 H 0.089 0.911 18 C -0.059 4.059 19 N -0.385 5.385 20 H 0.071 0.929 21 H 0.047 0.953 22 H 0.002 0.998 23 H 0.148 0.852 24 H 0.076 0.924 25 H 0.095 0.905 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.090 0.910 32 H 0.146 0.854 33 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.517 -12.015 -1.102 12.883 hybrid contribution 0.450 1.267 0.047 1.346 sum 4.966 -10.748 -1.055 11.886 Atomic orbital electron populations 1.69962 1.06068 1.26719 1.50985 1.24991 0.94868 0.99330 0.95419 0.86500 0.79687 0.83115 0.78090 1.20656 1.21303 1.19892 1.21196 0.93431 0.90361 1.50216 0.92105 1.19568 0.90713 0.87422 0.95724 1.60981 1.21008 1.01027 1.48774 1.22078 0.94193 0.90306 0.96021 0.95030 1.22382 1.00452 0.94388 0.97679 1.22462 0.96952 0.97016 0.99791 1.22347 0.97661 0.98416 0.96732 1.21872 0.94975 0.95915 0.97924 0.91124 1.21788 0.91708 0.92300 1.00141 1.58819 1.12492 1.15031 1.52199 0.92950 0.95319 0.99801 0.85184 0.92365 0.90493 0.92064 0.92053 0.92008 0.92243 0.93647 0.91046 0.85366 0.85157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.15 13.29 55.43 0.74 -26.42 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.51 -14.71 9.32 -34.44 -0.32 -15.03 16 8 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 9 C 0.19 5.11 5.27 -4.98 -0.03 5.09 16 10 N -0.68 -14.71 5.39 -106.82 -0.58 -15.29 16 11 C 0.09 1.56 3.20 -66.60 -0.21 1.34 16 12 H 0.03 0.62 8.01 -51.93 -0.42 0.20 16 13 C -0.11 -1.89 5.89 -25.07 -0.15 -2.04 16 14 C -0.12 -1.66 6.91 -24.74 -0.17 -1.84 16 15 C -0.11 -1.47 5.41 -25.08 -0.14 -1.60 16 16 C -0.09 -1.31 3.18 -89.50 -0.28 -1.59 16 17 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 18 C 0.07 1.04 4.96 -3.82 -0.02 1.02 16 19 N -0.86 -10.39 9.62 -10.36 -0.10 -10.48 16 20 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 21 H 0.03 0.82 7.68 -51.93 -0.40 0.42 16 22 H -0.02 -0.45 8.11 -51.93 -0.42 -0.87 16 23 H 0.33 6.81 6.05 -39.29 -0.24 6.57 16 24 H 0.06 1.02 8.14 -51.92 -0.42 0.59 16 25 H 0.08 1.43 8.05 -51.93 -0.42 1.01 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.79 7.81 -51.93 -0.41 0.38 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.72 7.82 -51.93 -0.41 0.31 16 31 H 0.07 1.13 6.53 -51.93 -0.34 0.79 16 32 H 0.33 3.60 8.08 -39.29 -0.32 3.28 16 33 H 0.34 3.56 9.08 -39.29 -0.36 3.20 16 LS Contribution 262.80 15.07 3.96 3.96 Total: -1.00 -29.87 262.80 -7.79 -37.66 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -5.38 Total: 6.84 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: -1.42 Total: -13.15 kcal Atomic # 7 Polarization: -52.25 SS G_CDS: 0.06 Total: -52.19 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -29.87 -7.79 -37.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084218330.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.346 kcal (2) G-P(sol) polarization free energy of solvation -29.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds