Wall clock time and date at job start Mon Mar 30 2020 02:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 120.00267 * 2 1 4 4 H 1.48505 * 109.47083 * 269.99885 * 3 2 1 5 5 H 1.48502 * 109.47144 * 29.99660 * 3 2 1 6 6 H 1.48502 * 109.47376 * 149.99817 * 3 2 1 7 7 C 1.37879 * 120.00136 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00559 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99936 * 359.97438 * 7 2 1 10 10 N 1.46890 * 109.47438 * 180.02562 * 9 7 2 11 11 C 1.46897 * 111.00182 * 180.02562 * 10 9 7 12 12 H 1.08999 * 110.01732 * 314.41132 * 11 10 9 13 13 C 1.54263 * 110.07445 * 75.83262 * 11 10 9 14 14 C 1.54888 * 104.19966 * 142.91509 * 13 11 10 15 15 C 1.54882 * 102.74819 * 322.05787 * 14 13 11 16 16 C 1.53876 * 110.03423 * 193.01971 * 11 10 9 17 17 H 1.09002 * 110.03305 * 121.38036 * 16 11 10 18 18 C 1.53005 * 110.03062 * 359.95314 * 16 11 10 19 19 N 1.46909 * 109.47002 * 178.42907 * 18 16 11 20 20 H 0.96995 * 120.00112 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47100 * 60.00032 * 9 7 2 22 22 H 1.08999 * 109.47120 * 300.00796 * 9 7 2 23 23 H 1.00901 * 111.00364 * 56.04445 * 10 9 7 24 24 H 1.09009 * 110.48606 * 261.59579 * 13 11 10 25 25 H 1.09000 * 110.48529 * 24.23319 * 13 11 10 26 26 H 1.08994 * 110.75860 * 203.73921 * 14 13 11 27 27 H 1.09002 * 110.90888 * 80.44541 * 14 13 11 28 28 H 1.08998 * 110.48635 * 279.25985 * 15 14 13 29 29 H 1.09004 * 110.48535 * 156.61816 * 15 14 13 30 30 H 1.08997 * 109.46928 * 298.42316 * 18 16 11 31 31 H 1.08996 * 109.47004 * 58.42824 * 18 16 11 32 32 H 1.00900 * 110.99820 * 56.04516 * 19 18 16 33 33 H 1.00896 * 110.99496 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2055 -3.6157 0.0027 11 6 1.5052 -4.9070 0.0032 12 1 0.6971 -4.8929 0.7345 13 6 0.9415 -5.2043 -1.4016 14 6 1.1265 -6.7329 -1.5696 15 6 2.4934 -6.9887 -0.8878 16 6 2.4919 -6.0417 0.3299 17 1 2.1627 -6.5782 1.2198 18 6 3.8938 -5.4698 0.5508 19 7 4.8174 -6.5580 0.8985 20 1 -0.4850 0.8400 -0.0004 21 1 0.6240 -2.5575 -0.8880 22 1 0.6246 -2.5563 0.8919 23 1 2.8404 -3.5480 0.7840 24 1 -0.1148 -4.9399 -1.4527 25 1 1.5076 -4.6657 -2.1616 26 1 1.1643 -7.0038 -2.6247 27 1 0.3325 -7.2791 -1.0603 28 1 3.3102 -6.7384 -1.5648 29 1 2.5697 -8.0267 -0.5637 30 1 4.2349 -4.9815 -0.3620 31 1 3.8660 -4.7433 1.3629 32 1 4.8123 -7.2767 0.1903 33 1 5.7506 -6.2055 1.0499 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084218330.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:44 Heat of formation + Delta-G solvation = -36.388565 kcal Electronic energy + Delta-G solvation = -12965.060797 eV Core-core repulsion = 10830.707564 eV Total energy + Delta-G solvation = -2134.353233 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.10480 -36.05086 -34.90238 -34.02127 -29.97043 -29.20887 -26.92278 -24.55884 -23.77447 -21.44426 -19.85423 -18.56605 -17.17105 -16.96988 -16.51393 -16.02601 -15.77320 -15.00692 -14.57374 -14.32750 -13.99752 -13.51376 -13.34245 -12.92170 -12.71460 -12.27791 -12.14140 -11.92539 -11.69043 -11.67322 -11.46008 -11.41854 -11.18653 -10.67206 -9.59276 -9.07704 -8.24027 -6.35588 1.39254 1.41365 1.52551 2.38351 3.09046 3.45011 3.60212 3.72439 3.92705 4.13792 4.44579 4.47339 4.55120 4.63961 4.72185 4.87597 4.94259 5.04470 5.10366 5.13431 5.18525 5.27442 5.30926 5.40342 5.52595 5.62556 6.02432 6.27393 6.45720 6.68108 6.74313 6.88734 7.35570 8.87781 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.045469 B = 0.008376 C = 0.007382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.659986 B = 3342.101401 C = 3792.260225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.974 3.026 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.536 4.536 8 H 0.064 0.936 9 C 0.209 3.791 10 N -0.677 5.677 11 C 0.077 3.923 12 H 0.013 0.987 13 C -0.114 4.114 14 C -0.114 4.114 15 C -0.105 4.105 16 C -0.081 4.081 17 H 0.074 0.926 18 C 0.079 3.921 19 N -0.851 5.851 20 H 0.265 0.735 21 H 0.001 0.999 22 H -0.047 1.047 23 H 0.333 0.667 24 H 0.043 0.957 25 H 0.058 0.942 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.086 0.914 30 H 0.032 0.968 31 H 0.055 0.945 32 H 0.346 0.654 33 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.572 -12.983 -1.287 14.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.798 3.202 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.574 4.574 8 H 0.082 0.918 9 C 0.081 3.919 10 N -0.310 5.310 11 C -0.034 4.034 12 H 0.032 0.968 13 C -0.152 4.152 14 C -0.152 4.152 15 C -0.143 4.143 16 C -0.100 4.100 17 H 0.093 0.907 18 C -0.052 4.052 19 N -0.382 5.382 20 H 0.074 0.926 21 H 0.019 0.981 22 H -0.030 1.030 23 H 0.154 0.846 24 H 0.062 0.938 25 H 0.076 0.924 26 H 0.099 0.901 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.105 0.895 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.160 0.840 33 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 6.049 -12.958 -1.313 14.361 hybrid contribution -0.051 1.507 0.126 1.513 sum 5.998 -11.451 -1.188 12.982 Atomic orbital electron populations 1.70098 1.07874 1.27996 1.51537 1.25986 0.95803 1.03483 0.94574 0.85315 0.78519 0.77865 0.78484 1.19801 1.20644 1.18660 1.21554 0.93764 0.91470 1.50588 0.91762 1.19194 0.90725 0.89116 0.92859 1.60902 1.20032 1.01157 1.48943 1.22271 0.94676 0.89934 0.96528 0.96850 1.22364 0.99081 0.97554 0.96193 1.22433 0.97778 0.93570 1.01383 1.22327 0.97331 0.99192 0.95447 1.21806 0.94053 0.94832 0.99296 0.90710 1.21564 0.92091 0.92727 0.98841 1.58740 1.12783 1.14301 1.52421 0.92623 0.98107 1.02977 0.84649 0.93821 0.92365 0.90149 0.90793 0.91564 0.89500 0.95010 0.92672 0.84045 0.83945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.73 13.29 21.45 0.28 -57.45 16 2 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 3 Si 0.97 44.95 29.54 68.60 2.03 46.97 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 7 C -0.54 -31.29 9.32 25.60 0.24 -31.05 16 8 H 0.06 3.63 7.81 -2.91 -0.02 3.60 16 9 C 0.21 11.61 5.27 85.56 0.45 12.06 16 10 N -0.68 -29.97 5.39 -491.86 -2.65 -32.62 16 11 C 0.08 2.85 3.20 45.64 0.15 3.00 16 12 H 0.01 0.55 8.01 -2.39 -0.02 0.53 16 13 C -0.11 -3.92 5.89 31.67 0.19 -3.73 16 14 C -0.11 -2.80 6.91 31.88 0.22 -2.58 16 15 C -0.11 -2.40 5.41 31.67 0.17 -2.23 16 16 C -0.08 -2.30 3.18 -10.07 -0.03 -2.33 16 17 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 18 C 0.08 2.21 4.96 86.30 0.43 2.64 16 19 N -0.85 -18.56 9.62 -186.70 -1.80 -20.36 16 20 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 21 H 0.00 0.05 7.68 -2.39 -0.02 0.03 16 22 H -0.05 -2.87 8.11 -2.39 -0.02 -2.89 16 23 H 0.33 14.14 6.05 -89.69 -0.54 13.59 16 24 H 0.04 1.58 8.14 -2.38 -0.02 1.57 16 25 H 0.06 2.21 8.05 -2.39 -0.02 2.19 16 26 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.07 1.48 7.81 -2.39 -0.02 1.46 16 29 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.03 0.97 7.82 -2.39 -0.02 0.96 16 31 H 0.05 1.72 6.53 -2.39 -0.02 1.70 16 32 H 0.35 6.32 8.08 -89.69 -0.72 5.60 16 33 H 0.35 6.53 9.08 -89.70 -0.81 5.72 16 Total: -1.00 -65.04 262.80 -0.85 -65.89 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: -0.98 Total: 21.36 kcal Atomic # 6 Polarization: -26.06 SS G_CDS: 2.27 Total: -23.78 kcal Atomic # 7 Polarization: -106.27 SS G_CDS: -4.16 Total: -110.43 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Total: -65.04 -0.85 -65.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084218330.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.498 kcal (2) G-P(sol) polarization free energy of solvation -65.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds