Wall clock time and date at job start Mon Mar 30 2020 01:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46659 * 2 1 4 4 C 1.52999 * 109.47127 * 185.00115 * 3 2 1 5 5 C 1.52997 * 109.47388 * 179.97438 * 4 3 2 6 6 C 1.53007 * 109.46713 * 60.00075 * 5 4 3 7 7 O 1.42899 * 109.46879 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.47166 * 60.00092 * 6 5 4 9 9 H 1.07995 * 119.99860 * 243.94448 * 8 6 5 10 10 C 1.37881 * 119.99801 * 63.94591 * 8 6 5 11 11 N 1.31515 * 120.00400 * 6.29020 * 10 8 6 12 12 Si 1.86798 * 119.99681 * 186.00962 * 10 8 6 13 13 H 1.48499 * 109.47228 * 60.00344 * 12 10 8 14 14 H 1.48503 * 109.47364 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47274 * 300.00441 * 12 10 8 16 16 C 1.52991 * 109.47228 * 299.99850 * 6 5 4 17 17 C 1.52997 * 109.47299 * 65.00457 * 3 2 1 18 18 H 1.09004 * 109.47309 * 299.99510 * 1 2 3 19 19 H 1.09000 * 109.47394 * 60.00150 * 1 2 3 20 20 H 1.09006 * 109.46949 * 180.02562 * 1 2 3 21 21 H 1.08994 * 109.46816 * 240.00298 * 2 1 3 22 22 H 1.09000 * 109.47394 * 119.99850 * 2 1 3 23 23 H 1.08999 * 109.47256 * 305.00029 * 3 2 1 24 24 H 1.09008 * 109.47054 * 59.99839 * 4 3 2 25 25 H 1.08999 * 109.46982 * 300.00081 * 4 3 2 26 26 H 1.08999 * 109.47302 * 300.00102 * 5 4 3 27 27 H 1.09005 * 109.47318 * 179.97438 * 5 4 3 28 28 H 0.96695 * 114.00173 * 180.02562 * 7 6 5 29 29 H 0.97000 * 119.99454 * 2.13098 * 11 10 8 30 30 H 1.08999 * 109.47043 * 180.02562 * 16 6 5 31 31 H 1.08999 * 109.47123 * 300.00179 * 16 6 5 32 32 H 1.09010 * 109.46931 * 299.99480 * 17 3 2 33 33 H 1.08999 * 109.47316 * 59.99609 * 17 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5647 1.4445 -0.1257 5 6 4.0746 2.8870 -0.1264 6 6 3.6698 3.5715 1.1808 7 8 4.1465 4.9187 1.1804 8 6 4.2708 2.8268 2.3449 9 1 3.6286 2.3409 3.0645 10 6 5.6404 2.7658 2.4912 11 7 6.4190 3.4583 1.6888 12 14 6.3899 1.7058 3.8343 13 1 5.9876 0.2909 3.6305 14 1 7.8702 1.8125 3.7810 15 1 5.9079 2.1715 5.1594 16 6 2.1450 3.5696 1.3065 17 6 1.6352 2.1266 1.3074 18 1 -0.3634 0.5138 0.8900 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 1.8933 -0.5138 -0.8900 22 1 1.8934 -0.5138 0.8900 23 1 1.6053 1.9816 -0.8418 24 1 3.8531 0.9572 -1.0572 25 1 3.9994 0.9055 0.7160 26 1 3.6399 3.4257 -0.9684 27 1 5.1610 2.8884 -0.2155 28 1 3.9260 5.4141 1.9810 29 1 6.0290 4.0359 1.0140 30 1 1.8567 4.0577 2.2375 31 1 1.7104 4.1083 0.4645 32 1 0.5488 2.1252 1.3969 33 1 2.0699 1.5875 2.1492 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085877425.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:35 Heat of formation + Delta-G solvation = -88.035705 kcal Electronic energy + Delta-G solvation = -13713.924593 eV Core-core repulsion = 11545.039020 eV Total energy + Delta-G solvation = -2168.885572 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.56430 -35.42043 -32.28995 -31.66973 -29.82309 -27.43521 -24.59320 -22.66586 -21.69540 -19.81039 -18.91569 -16.81791 -15.56117 -14.30647 -14.26927 -13.81140 -13.50355 -13.19734 -12.73204 -12.31563 -12.18344 -11.57085 -11.23096 -11.17560 -10.88588 -10.74043 -10.57170 -10.29764 -10.08035 -10.04262 -9.89933 -9.60475 -9.48259 -8.69958 -8.36907 -7.81076 -6.15603 -4.02846 3.45432 3.46102 3.65233 4.57863 5.22163 5.30088 5.40811 5.45690 5.62117 5.79329 5.90031 5.99171 6.13659 6.22616 6.26648 6.34235 6.46772 6.50889 6.55025 6.56629 6.70816 6.81365 6.88657 7.05611 7.10008 7.33847 7.43393 7.69500 8.19445 8.48579 9.01484 9.21145 9.80748 11.18890 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.036124 B = 0.013443 C = 0.011568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.917090 B = 2082.345869 C = 2419.849264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.082 4.082 4 C -0.095 4.095 5 C -0.095 4.095 6 C 0.233 3.767 7 O -0.583 6.583 8 C -0.629 4.629 9 H 0.049 0.951 10 C 0.036 3.964 11 N -0.900 5.900 12 Si 1.055 2.945 13 H -0.289 1.289 14 H -0.284 1.284 15 H -0.290 1.290 16 C -0.129 4.129 17 C -0.099 4.099 18 H 0.055 0.945 19 H 0.048 0.952 20 H 0.046 0.954 21 H 0.054 0.946 22 H 0.061 0.939 23 H 0.054 0.946 24 H 0.040 0.960 25 H 0.076 0.924 26 H 0.027 0.973 27 H 0.068 0.932 28 H 0.356 0.644 29 H 0.293 0.707 30 H 0.046 0.954 31 H 0.037 0.963 32 H 0.041 0.959 33 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.317 -4.461 -1.766 9.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.100 4.100 4 C -0.133 4.133 5 C -0.133 4.133 6 C 0.195 3.805 7 O -0.388 6.388 8 C -0.667 4.667 9 H 0.067 0.933 10 C -0.173 4.173 11 N -0.537 5.537 12 Si 0.885 3.115 13 H -0.216 1.216 14 H -0.209 1.209 15 H -0.217 1.217 16 C -0.167 4.167 17 C -0.136 4.136 18 H 0.074 0.926 19 H 0.068 0.932 20 H 0.065 0.935 21 H 0.073 0.927 22 H 0.080 0.920 23 H 0.073 0.927 24 H 0.058 0.942 25 H 0.094 0.906 26 H 0.045 0.955 27 H 0.087 0.913 28 H 0.201 0.799 29 H 0.107 0.893 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.653 -5.131 -1.740 8.580 hybrid contribution -1.743 0.627 -0.031 1.852 sum -8.396 -4.505 -1.771 9.691 Atomic orbital electron populations 1.21817 0.96686 1.00672 1.01652 1.21572 0.95085 0.97467 1.01533 1.21132 0.96646 0.94487 0.97779 1.21394 0.93845 0.97449 1.00609 1.21326 1.01489 0.94383 0.96128 1.18935 0.87654 0.79965 0.93989 1.86354 1.81621 1.27179 1.43639 1.22264 0.94207 1.38656 1.11574 0.93308 1.25585 0.93934 0.97424 1.00317 1.70609 1.39459 1.24591 1.19014 0.83772 0.76328 0.75918 0.75521 1.21553 1.20944 1.21674 1.22085 0.99537 0.95876 0.99156 1.21470 0.97847 0.96417 0.97916 0.92555 0.93243 0.93513 0.92684 0.92022 0.92729 0.94159 0.90557 0.95469 0.91332 0.79935 0.89267 0.93526 0.94464 0.94056 0.91048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.67 37.16 0.36 -1.59 16 2 C -0.12 -1.80 5.40 -26.73 -0.14 -1.95 16 3 C -0.08 -1.47 2.19 -90.62 -0.20 -1.67 16 4 C -0.10 -1.99 4.98 -26.73 -0.13 -2.12 16 5 C -0.10 -2.28 4.80 -26.73 -0.13 -2.41 16 6 C 0.23 5.75 0.71 -91.77 -0.07 5.68 16 7 O -0.58 -14.93 10.97 -35.23 -0.39 -15.31 16 8 C -0.63 -16.85 6.31 -34.44 -0.22 -17.07 16 9 H 0.05 1.31 6.57 -52.49 -0.35 0.97 16 10 C 0.04 1.01 5.20 -17.82 -0.09 0.92 16 11 N -0.90 -26.92 12.80 55.43 0.71 -26.21 16 12 Si 1.06 24.87 29.91 -169.99 -5.08 19.78 16 13 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 14 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 16 C -0.13 -2.73 5.04 -26.71 -0.13 -2.87 16 17 C -0.10 -1.88 4.73 -26.71 -0.13 -2.01 16 18 H 0.06 0.73 6.57 -51.93 -0.34 0.39 16 19 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 20 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 21 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 22 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 23 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.04 0.76 8.14 -51.92 -0.42 0.34 16 25 H 0.08 1.74 7.22 -51.93 -0.37 1.37 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.07 1.83 6.13 -51.93 -0.32 1.51 16 28 H 0.36 8.22 9.04 45.56 0.41 8.63 16 29 H 0.29 8.89 4.87 -40.82 -0.20 8.69 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.04 0.69 6.57 -51.92 -0.34 0.35 16 33 H 0.07 1.47 6.55 -51.93 -0.34 1.13 16 LS Contribution 250.82 15.07 3.78 3.78 Total: -1.00 -29.25 250.82 -6.31 -35.56 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -4.45 Total: 7.48 kcal Atomic # 6 Polarization: -24.20 SS G_CDS: -0.88 Total: -25.08 kcal Atomic # 7 Polarization: -26.92 SS G_CDS: 0.71 Total: -26.21 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -0.39 Total: -15.31 kcal Atomic # 14 Polarization: 24.87 SS G_CDS: -5.08 Total: 19.78 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -29.25 -6.31 -35.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085877425.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.478 kcal (2) G-P(sol) polarization free energy of solvation -29.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds