Wall clock time and date at job start Mon Mar 30 2020 01:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46659 * 2 1 4 4 C 1.52999 * 109.47127 * 185.00115 * 3 2 1 5 5 C 1.52997 * 109.47388 * 179.97438 * 4 3 2 6 6 C 1.53007 * 109.46713 * 60.00075 * 5 4 3 7 7 O 1.42899 * 109.46879 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.47166 * 60.00092 * 6 5 4 9 9 H 1.07995 * 119.99860 * 243.94448 * 8 6 5 10 10 C 1.37881 * 119.99801 * 63.94591 * 8 6 5 11 11 N 1.31515 * 120.00400 * 6.29020 * 10 8 6 12 12 Si 1.86798 * 119.99681 * 186.00962 * 10 8 6 13 13 H 1.48499 * 109.47228 * 60.00344 * 12 10 8 14 14 H 1.48503 * 109.47364 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47274 * 300.00441 * 12 10 8 16 16 C 1.52991 * 109.47228 * 299.99850 * 6 5 4 17 17 C 1.52997 * 109.47299 * 65.00457 * 3 2 1 18 18 H 1.09004 * 109.47309 * 299.99510 * 1 2 3 19 19 H 1.09000 * 109.47394 * 60.00150 * 1 2 3 20 20 H 1.09006 * 109.46949 * 180.02562 * 1 2 3 21 21 H 1.08994 * 109.46816 * 240.00298 * 2 1 3 22 22 H 1.09000 * 109.47394 * 119.99850 * 2 1 3 23 23 H 1.08999 * 109.47256 * 305.00029 * 3 2 1 24 24 H 1.09008 * 109.47054 * 59.99839 * 4 3 2 25 25 H 1.08999 * 109.46982 * 300.00081 * 4 3 2 26 26 H 1.08999 * 109.47302 * 300.00102 * 5 4 3 27 27 H 1.09005 * 109.47318 * 179.97438 * 5 4 3 28 28 H 0.96695 * 114.00173 * 180.02562 * 7 6 5 29 29 H 0.97000 * 119.99454 * 2.13098 * 11 10 8 30 30 H 1.08999 * 109.47043 * 180.02562 * 16 6 5 31 31 H 1.08999 * 109.47123 * 300.00179 * 16 6 5 32 32 H 1.09010 * 109.46931 * 299.99480 * 17 3 2 33 33 H 1.08999 * 109.47316 * 59.99609 * 17 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5647 1.4445 -0.1257 5 6 4.0746 2.8870 -0.1264 6 6 3.6698 3.5715 1.1808 7 8 4.1465 4.9187 1.1804 8 6 4.2708 2.8268 2.3449 9 1 3.6286 2.3409 3.0645 10 6 5.6404 2.7658 2.4912 11 7 6.4190 3.4583 1.6888 12 14 6.3899 1.7058 3.8343 13 1 5.9876 0.2909 3.6305 14 1 7.8702 1.8125 3.7810 15 1 5.9079 2.1715 5.1594 16 6 2.1450 3.5696 1.3065 17 6 1.6352 2.1266 1.3074 18 1 -0.3634 0.5138 0.8900 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 1.8933 -0.5138 -0.8900 22 1 1.8934 -0.5138 0.8900 23 1 1.6053 1.9816 -0.8418 24 1 3.8531 0.9572 -1.0572 25 1 3.9994 0.9055 0.7160 26 1 3.6399 3.4257 -0.9684 27 1 5.1610 2.8884 -0.2155 28 1 3.9260 5.4141 1.9810 29 1 6.0290 4.0359 1.0140 30 1 1.8567 4.0577 2.2375 31 1 1.7104 4.1083 0.4645 32 1 0.5488 2.1252 1.3969 33 1 2.0699 1.5875 2.1492 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085877425.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:35 Heat of formation + Delta-G solvation = -106.512433 kcal Electronic energy + Delta-G solvation = -13714.725804 eV Core-core repulsion = 11545.039020 eV Total energy + Delta-G solvation = -2169.686783 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.30030 -37.12346 -34.25487 -33.32691 -31.54241 -29.00927 -26.61040 -24.11799 -23.38463 -21.34387 -20.75105 -18.78786 -17.44148 -16.04022 -15.71905 -15.57573 -15.28926 -14.69550 -14.33871 -14.02176 -13.68800 -13.17560 -12.92892 -12.83682 -12.54853 -12.40526 -12.18975 -11.95973 -11.87053 -11.83082 -11.45982 -11.26600 -11.02184 -10.50646 -10.45634 -9.83817 -8.34795 -6.22628 1.53866 1.60075 1.78776 2.62148 3.29097 3.72413 3.91918 4.01187 4.12404 4.43546 4.47208 4.58717 4.66966 4.72687 4.78829 4.84771 4.90683 5.00943 5.10274 5.13507 5.21280 5.31320 5.38557 5.46051 5.50498 5.56289 5.72668 5.82791 6.11021 6.36115 6.79962 7.26295 7.69330 8.97315 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.036124 B = 0.013443 C = 0.011568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.917090 B = 2082.345869 C = 2419.849264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C -0.077 4.077 4 C -0.091 4.091 5 C -0.095 4.095 6 C 0.218 3.782 7 O -0.599 6.599 8 C -0.624 4.624 9 H 0.046 0.954 10 C -0.013 4.013 11 N -0.931 5.931 12 Si 1.098 2.902 13 H -0.273 1.273 14 H -0.291 1.291 15 H -0.274 1.274 16 C -0.124 4.124 17 C -0.094 4.094 18 H 0.054 0.946 19 H 0.057 0.943 20 H 0.064 0.936 21 H 0.065 0.935 22 H 0.054 0.946 23 H 0.064 0.936 24 H 0.057 0.943 25 H 0.050 0.950 26 H 0.033 0.967 27 H 0.031 0.969 28 H 0.362 0.638 29 H 0.279 0.721 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.071 0.929 33 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.137 -5.709 -1.670 11.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.153 4.153 3 C -0.095 4.095 4 C -0.128 4.128 5 C -0.133 4.133 6 C 0.180 3.820 7 O -0.404 6.404 8 C -0.662 4.662 9 H 0.064 0.936 10 C -0.215 4.215 11 N -0.570 5.570 12 Si 0.922 3.078 13 H -0.198 1.198 14 H -0.217 1.217 15 H -0.200 1.200 16 C -0.162 4.162 17 C -0.132 4.132 18 H 0.073 0.927 19 H 0.076 0.924 20 H 0.083 0.917 21 H 0.084 0.916 22 H 0.073 0.927 23 H 0.083 0.917 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.208 0.792 29 H 0.092 0.908 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.090 0.910 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.500 -6.382 -1.639 10.755 hybrid contribution -1.196 1.062 -0.086 1.602 sum -9.696 -5.320 -1.725 11.193 Atomic orbital electron populations 1.21784 0.94606 1.02067 1.01987 1.21527 0.96846 0.95129 1.01793 1.21096 0.94231 0.96700 0.97500 1.21341 0.96140 0.94944 1.00417 1.21324 0.99266 0.96582 0.96113 1.19164 0.89983 0.79230 0.93625 1.86337 1.82219 1.27745 1.44138 1.22512 0.94129 1.37764 1.11787 0.93566 1.26831 0.95145 0.97958 1.01561 1.70720 1.39794 1.26264 1.20230 0.83195 0.75183 0.75448 0.73938 1.19809 1.21742 1.19986 1.21999 0.96847 0.97800 0.99564 1.21438 0.99490 0.94490 0.97762 0.92675 0.92415 0.91703 0.91589 0.92725 0.91748 0.92450 0.93074 0.94850 0.95017 0.79198 0.90765 0.93474 0.93545 0.91037 0.92949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 9.67 71.98 0.70 -2.52 16 2 C -0.12 -3.13 5.40 30.60 0.17 -2.97 16 3 C -0.08 -2.57 2.19 -10.79 -0.02 -2.60 16 4 C -0.09 -3.70 4.98 30.59 0.15 -3.55 16 5 C -0.09 -4.56 4.80 30.60 0.15 -4.41 16 6 C 0.22 10.77 0.71 -11.54 -0.01 10.77 16 7 O -0.60 -31.09 10.97 -148.98 -1.63 -32.73 16 8 C -0.62 -33.49 6.31 25.60 0.16 -33.32 16 9 H 0.05 2.46 6.57 -2.91 -0.02 2.44 16 10 C -0.01 -0.71 5.20 84.66 0.44 -0.26 16 11 N -0.93 -57.06 12.80 21.45 0.27 -56.79 16 12 Si 1.10 50.10 29.91 68.60 2.05 52.15 16 13 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 14 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 15 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 16 C -0.12 -5.10 5.04 30.61 0.15 -4.94 16 17 C -0.09 -3.37 4.73 30.61 0.14 -3.22 16 18 H 0.05 1.22 6.57 -2.38 -0.02 1.20 16 19 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 20 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 21 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 22 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 23 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 24 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 25 H 0.05 2.32 7.22 -2.39 -0.02 2.31 16 26 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.03 1.73 6.13 -2.38 -0.01 1.72 16 28 H 0.36 17.00 9.04 -74.06 -0.67 16.33 16 29 H 0.28 17.54 4.87 -92.71 -0.45 17.09 16 30 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.05 1.80 8.14 -2.39 -0.02 1.79 16 32 H 0.07 2.14 6.57 -2.38 -0.02 2.12 16 33 H 0.05 2.07 6.55 -2.39 -0.02 2.06 16 Total: -1.00 -62.61 250.82 3.45 -59.16 By element: Atomic # 1 Polarization: 24.52 SS G_CDS: 0.73 Total: 25.24 kcal Atomic # 6 Polarization: -49.07 SS G_CDS: 2.03 Total: -47.04 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: 0.27 Total: -56.79 kcal Atomic # 8 Polarization: -31.09 SS G_CDS: -1.63 Total: -32.73 kcal Atomic # 14 Polarization: 50.10 SS G_CDS: 2.05 Total: 52.15 kcal Total: -62.61 3.45 -59.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085877425.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.355 kcal (2) G-P(sol) polarization free energy of solvation -62.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds