Wall clock time and date at job start Mon Mar 30 2020 02:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.46894 * 2 1 4 4 H 1.09000 * 109.47140 * 55.00428 * 3 2 1 5 5 C 1.52999 * 109.47592 * 295.00083 * 3 2 1 6 6 C 1.52997 * 109.47592 * 179.97438 * 5 3 2 7 7 C 1.52996 * 109.47165 * 60.00300 * 6 5 3 8 8 C 1.53002 * 109.46972 * 300.00293 * 7 6 5 9 9 O 1.42900 * 109.47116 * 299.99731 * 8 7 6 10 10 C 1.50696 * 109.47306 * 180.02562 * 8 7 6 11 11 H 1.08003 * 119.99953 * 239.99831 * 10 8 7 12 12 C 1.37877 * 120.00530 * 59.99166 * 10 8 7 13 13 N 1.31515 * 119.99491 * 0.02562 * 12 10 8 14 14 Si 1.86800 * 120.00456 * 180.02562 * 12 10 8 15 15 H 1.48505 * 109.46653 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47055 * 120.00288 * 14 12 10 17 17 H 1.48495 * 109.47483 * 240.00322 * 14 12 10 18 18 C 1.52997 * 109.47415 * 59.99860 * 8 7 6 19 19 H 1.09004 * 109.47017 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.46995 * 299.99751 * 1 2 3 21 21 H 1.08998 * 109.47867 * 60.00073 * 1 2 3 22 22 H 1.09001 * 109.46995 * 240.00249 * 2 1 3 23 23 H 1.08994 * 109.47388 * 119.99954 * 2 1 3 24 24 H 1.09000 * 109.47160 * 300.00333 * 5 3 2 25 25 H 1.09002 * 109.46719 * 60.00054 * 5 3 2 26 26 H 1.09000 * 109.47140 * 300.00346 * 6 5 3 27 27 H 1.09001 * 109.47375 * 180.02562 * 6 5 3 28 28 H 1.08992 * 109.47534 * 180.02562 * 7 6 5 29 29 H 1.08996 * 109.47134 * 59.99508 * 7 6 5 30 30 H 0.96705 * 114.00291 * 300.00715 * 9 8 7 31 31 H 0.97010 * 119.99733 * 179.97438 * 13 12 10 32 32 H 1.09001 * 109.46922 * 180.02562 * 18 8 7 33 33 H 1.09000 * 109.47140 * 59.99976 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 1.6351 2.1266 -1.3073 6 6 2.1445 3.5693 -1.3070 7 6 3.6693 3.5718 -1.1811 8 6 4.0741 2.8876 0.1262 9 8 3.5039 3.5939 1.2299 10 6 5.5760 2.8906 0.2506 11 1 6.1137 1.9567 0.3221 12 6 6.2636 4.0854 0.2731 13 7 5.6087 5.2226 0.1864 14 14 8.1253 4.0890 0.4266 15 1 8.6180 2.6904 0.5067 16 1 8.7186 4.7551 -0.7607 17 1 8.5193 4.8243 1.6550 18 6 3.5648 1.4450 0.1259 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3635 0.5138 -0.8899 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8899 24 1 2.0697 1.5876 -2.1491 25 1 0.5488 2.1253 -1.3968 26 1 1.7096 4.1080 -0.4652 27 1 1.8558 4.0568 -2.2382 28 1 4.0322 4.5995 -1.1804 29 1 4.1042 3.0330 -2.0228 30 1 3.7835 4.5175 1.2926 31 1 6.0925 6.0633 0.2025 32 1 3.8528 0.9578 1.0575 33 1 3.9997 0.9062 -0.7159 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085879101.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:26 Heat of formation + Delta-G solvation = -88.541498 kcal Electronic energy + Delta-G solvation = -13576.286142 eV Core-core repulsion = 11407.378637 eV Total energy + Delta-G solvation = -2168.907505 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.34729 -34.95610 -32.11181 -31.97365 -29.41670 -27.88115 -24.90292 -22.99581 -21.09291 -19.74005 -18.53760 -16.71263 -14.92249 -14.58658 -14.27917 -14.10436 -13.30682 -13.15527 -12.79980 -12.11508 -11.84499 -11.59172 -11.30656 -11.16828 -10.96575 -10.76560 -10.47632 -10.43244 -10.17376 -9.97323 -9.83860 -9.49275 -9.42493 -8.72289 -8.47383 -7.83819 -6.08448 -4.19430 3.25108 3.33630 3.38170 4.36877 5.15067 5.34016 5.37856 5.54035 5.73367 5.91776 5.93960 6.20708 6.27821 6.28443 6.32834 6.40700 6.56789 6.58782 6.64415 6.70929 6.78288 6.93150 7.01240 7.20616 7.26870 7.46519 7.68684 7.81775 8.11889 8.30937 8.83811 9.49125 9.68263 10.93507 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.058557 B = 0.010458 C = 0.009721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.048726 B = 2676.636083 C = 2879.534694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C -0.084 4.084 4 H 0.072 0.928 5 C -0.107 4.107 6 C -0.116 4.116 7 C -0.136 4.136 8 C 0.252 3.748 9 O -0.591 6.591 10 C -0.532 4.532 11 H 0.057 0.943 12 C 0.067 3.933 13 N -0.899 5.899 14 Si 0.896 3.104 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.283 1.283 18 C -0.089 4.089 19 H 0.044 0.956 20 H 0.051 0.949 21 H 0.054 0.946 22 H 0.054 0.946 23 H 0.056 0.944 24 H 0.049 0.951 25 H 0.046 0.954 26 H 0.057 0.943 27 H 0.037 0.963 28 H 0.091 0.909 29 H 0.038 0.962 30 H 0.377 0.623 31 H 0.264 0.736 32 H 0.050 0.950 33 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.211 -4.847 -1.980 8.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.102 4.102 4 H 0.090 0.910 5 C -0.145 4.145 6 C -0.154 4.154 7 C -0.174 4.174 8 C 0.213 3.787 9 O -0.400 6.400 10 C -0.571 4.571 11 H 0.076 0.924 12 C -0.133 4.133 13 N -0.540 5.540 14 Si 0.724 3.276 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.209 1.209 18 C -0.126 4.126 19 H 0.063 0.937 20 H 0.070 0.930 21 H 0.073 0.927 22 H 0.073 0.927 23 H 0.075 0.925 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.056 0.944 28 H 0.109 0.891 29 H 0.057 0.943 30 H 0.227 0.773 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.459 -5.250 -1.881 8.533 hybrid contribution 1.390 0.625 -0.130 1.529 sum -5.069 -4.626 -2.011 7.151 Atomic orbital electron populations 1.21810 0.96744 1.00505 1.01714 1.21614 0.95097 0.97912 1.01195 1.21134 0.97172 0.93906 0.98005 0.90971 1.21570 0.98706 0.96916 0.97259 1.21527 0.98863 0.95316 0.99646 1.22164 0.91888 1.04320 0.99074 1.18564 0.90183 0.86868 0.83133 1.86089 1.73177 1.29050 1.51668 1.21879 0.92726 0.92794 1.49677 0.92424 1.25003 0.98746 0.95514 0.94077 1.69618 1.35580 0.97434 1.51394 0.86476 0.85344 0.78128 0.77642 1.19797 1.20988 1.20916 1.21491 0.93000 0.98022 1.00134 0.93679 0.93000 0.92745 0.92685 0.92549 0.93206 0.93527 0.92385 0.94405 0.89106 0.94332 0.77338 0.92557 0.93155 0.92767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.67 37.16 0.36 -1.64 16 2 C -0.12 -1.87 5.40 -26.73 -0.14 -2.01 16 3 C -0.08 -1.57 2.04 -90.62 -0.19 -1.76 16 4 H 0.07 1.48 7.68 -51.93 -0.40 1.08 16 5 C -0.11 -1.93 4.96 -26.73 -0.13 -2.06 16 6 C -0.12 -2.35 5.78 -26.73 -0.15 -2.50 16 7 C -0.14 -3.24 4.69 -26.73 -0.13 -3.37 16 8 C 0.25 6.33 0.66 -91.77 -0.06 6.27 16 9 O -0.59 -15.53 11.61 -35.23 -0.41 -15.94 16 10 C -0.53 -14.65 8.25 -34.44 -0.28 -14.93 16 11 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 12 C 0.07 1.82 5.22 -17.82 -0.09 1.72 16 13 N -0.90 -24.40 9.68 55.43 0.54 -23.86 16 14 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 15 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 C -0.09 -1.95 4.17 -26.73 -0.11 -2.07 16 19 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 20 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 21 H 0.05 0.70 6.57 -51.93 -0.34 0.36 16 22 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 23 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.05 0.74 6.57 -51.93 -0.34 0.40 16 26 H 0.06 1.22 7.68 -51.93 -0.40 0.82 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 29 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.38 10.17 7.14 45.56 0.33 10.49 16 31 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 32 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 254.02 15.07 3.83 3.83 Total: -1.00 -27.16 254.02 -6.81 -33.97 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -4.82 Total: 8.26 kcal Atomic # 6 Polarization: -21.41 SS G_CDS: -0.93 Total: -22.34 kcal Atomic # 7 Polarization: -24.40 SS G_CDS: 0.54 Total: -23.86 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -0.41 Total: -15.94 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -27.16 -6.81 -33.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879101.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.568 kcal (2) G-P(sol) polarization free energy of solvation -27.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds