Wall clock time and date at job start Mon Mar 30 2020 02:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.46894 * 2 1 4 4 H 1.09000 * 109.47140 * 55.00428 * 3 2 1 5 5 C 1.52999 * 109.47592 * 295.00083 * 3 2 1 6 6 C 1.52997 * 109.47592 * 179.97438 * 5 3 2 7 7 C 1.52996 * 109.47165 * 60.00300 * 6 5 3 8 8 C 1.53002 * 109.46972 * 300.00293 * 7 6 5 9 9 O 1.42900 * 109.47116 * 299.99731 * 8 7 6 10 10 C 1.50696 * 109.47306 * 180.02562 * 8 7 6 11 11 H 1.08003 * 119.99953 * 239.99831 * 10 8 7 12 12 C 1.37877 * 120.00530 * 59.99166 * 10 8 7 13 13 N 1.31515 * 119.99491 * 0.02562 * 12 10 8 14 14 Si 1.86800 * 120.00456 * 180.02562 * 12 10 8 15 15 H 1.48505 * 109.46653 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47055 * 120.00288 * 14 12 10 17 17 H 1.48495 * 109.47483 * 240.00322 * 14 12 10 18 18 C 1.52997 * 109.47415 * 59.99860 * 8 7 6 19 19 H 1.09004 * 109.47017 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.46995 * 299.99751 * 1 2 3 21 21 H 1.08998 * 109.47867 * 60.00073 * 1 2 3 22 22 H 1.09001 * 109.46995 * 240.00249 * 2 1 3 23 23 H 1.08994 * 109.47388 * 119.99954 * 2 1 3 24 24 H 1.09000 * 109.47160 * 300.00333 * 5 3 2 25 25 H 1.09002 * 109.46719 * 60.00054 * 5 3 2 26 26 H 1.09000 * 109.47140 * 300.00346 * 6 5 3 27 27 H 1.09001 * 109.47375 * 180.02562 * 6 5 3 28 28 H 1.08992 * 109.47534 * 180.02562 * 7 6 5 29 29 H 1.08996 * 109.47134 * 59.99508 * 7 6 5 30 30 H 0.96705 * 114.00291 * 300.00715 * 9 8 7 31 31 H 0.97010 * 119.99733 * 179.97438 * 13 12 10 32 32 H 1.09001 * 109.46922 * 180.02562 * 18 8 7 33 33 H 1.09000 * 109.47140 * 59.99976 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 1.6351 2.1266 -1.3073 6 6 2.1445 3.5693 -1.3070 7 6 3.6693 3.5718 -1.1811 8 6 4.0741 2.8876 0.1262 9 8 3.5039 3.5939 1.2299 10 6 5.5760 2.8906 0.2506 11 1 6.1137 1.9567 0.3221 12 6 6.2636 4.0854 0.2731 13 7 5.6087 5.2226 0.1864 14 14 8.1253 4.0890 0.4266 15 1 8.6180 2.6904 0.5067 16 1 8.7186 4.7551 -0.7607 17 1 8.5193 4.8243 1.6550 18 6 3.5648 1.4450 0.1259 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3635 0.5138 -0.8899 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8899 24 1 2.0697 1.5876 -2.1491 25 1 0.5488 2.1253 -1.3968 26 1 1.7096 4.1080 -0.4652 27 1 1.8558 4.0568 -2.2382 28 1 4.0322 4.5995 -1.1804 29 1 4.1042 3.0330 -2.0228 30 1 3.7835 4.5175 1.2926 31 1 6.0925 6.0633 0.2025 32 1 3.8528 0.9578 1.0575 33 1 3.9997 0.9062 -0.7159 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085879101.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:26 Heat of formation + Delta-G solvation = -104.725193 kcal Electronic energy + Delta-G solvation = -13576.987920 eV Core-core repulsion = 11407.378637 eV Total energy + Delta-G solvation = -2169.609283 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.07958 -36.67524 -34.09080 -33.65471 -31.16778 -29.47905 -26.85653 -24.39694 -22.80203 -21.31055 -20.30429 -18.73527 -16.97678 -16.37621 -15.82147 -15.63158 -14.99268 -14.85683 -14.25256 -13.74723 -13.51851 -13.20690 -12.99154 -12.87411 -12.81230 -12.30740 -12.26487 -11.98451 -11.88368 -11.72740 -11.49308 -11.21827 -11.02591 -10.57639 -10.44335 -9.84112 -8.13661 -6.33457 1.37177 1.40269 1.50860 2.39073 3.05630 3.97148 4.02597 4.08220 4.34133 4.47760 4.50861 4.64747 4.76287 4.81264 4.94155 4.96913 5.03803 5.04763 5.12992 5.24503 5.30060 5.40139 5.45360 5.54314 5.60024 5.63475 5.72611 5.90948 6.14855 6.27015 6.73630 7.38115 7.56159 8.85574 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.058557 B = 0.010458 C = 0.009721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.048726 B = 2676.636083 C = 2879.534694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C -0.078 4.078 4 H 0.052 0.948 5 C -0.102 4.102 6 C -0.112 4.112 7 C -0.130 4.130 8 C 0.238 3.762 9 O -0.596 6.596 10 C -0.563 4.563 11 H 0.047 0.953 12 C 0.026 3.974 13 N -0.912 5.912 14 Si 0.956 3.044 15 H -0.273 1.273 16 H -0.277 1.277 17 H -0.279 1.279 18 C -0.087 4.087 19 H 0.065 0.935 20 H 0.048 0.952 21 H 0.061 0.939 22 H 0.065 0.935 23 H 0.054 0.946 24 H 0.059 0.941 25 H 0.075 0.925 26 H 0.045 0.955 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.033 0.967 30 H 0.370 0.630 31 H 0.267 0.733 32 H 0.036 0.964 33 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.957 -5.692 -2.676 9.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C -0.097 4.097 4 H 0.071 0.929 5 C -0.139 4.139 6 C -0.149 4.149 7 C -0.168 4.168 8 C 0.199 3.801 9 O -0.404 6.404 10 C -0.602 4.602 11 H 0.065 0.935 12 C -0.173 4.173 13 N -0.553 5.553 14 Si 0.782 3.218 15 H -0.198 1.198 16 H -0.203 1.203 17 H -0.205 1.205 18 C -0.125 4.125 19 H 0.084 0.916 20 H 0.067 0.933 21 H 0.080 0.920 22 H 0.083 0.917 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.094 0.906 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.052 0.948 30 H 0.218 0.782 31 H 0.077 0.923 32 H 0.055 0.945 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.215 -6.101 -2.579 9.795 hybrid contribution 1.650 0.912 0.104 1.888 sum -5.565 -5.190 -2.476 8.002 Atomic orbital electron populations 1.21777 0.94643 1.02026 1.01933 1.21559 0.96882 0.95272 1.01673 1.21059 0.94492 0.96288 0.97852 0.92943 1.21547 1.00491 0.94957 0.96908 1.21470 0.96006 0.97326 1.00125 1.21994 0.94561 1.02188 0.98081 1.18814 0.89398 0.88591 0.83311 1.86089 1.73229 1.28583 1.52537 1.22177 0.94377 0.92709 1.50895 0.93500 1.25686 1.02739 0.95216 0.93653 1.69716 1.36881 0.97713 1.50973 0.85552 0.80528 0.77983 0.77774 1.19813 1.20268 1.20484 1.21451 0.95675 0.95750 0.99578 0.91573 0.93280 0.92030 0.91674 0.92708 0.92261 0.90611 0.93629 0.92413 0.91900 0.94841 0.78188 0.92319 0.94509 0.92369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 9.67 71.98 0.70 -2.70 16 2 C -0.12 -3.31 5.40 30.59 0.17 -3.15 16 3 C -0.08 -2.84 2.04 -10.79 -0.02 -2.86 16 4 H 0.05 2.10 7.68 -2.39 -0.02 2.09 16 5 C -0.10 -3.40 4.96 30.59 0.15 -3.25 16 6 C -0.11 -4.39 5.78 30.59 0.18 -4.21 16 7 C -0.13 -6.21 4.69 30.59 0.14 -6.07 16 8 C 0.24 12.13 0.66 -11.54 -0.01 12.12 16 9 O -0.60 -32.02 11.61 -148.98 -1.73 -33.75 16 10 C -0.56 -31.52 8.25 25.60 0.21 -31.31 16 11 H 0.05 2.64 7.74 -2.91 -0.02 2.62 16 12 C 0.03 1.44 5.22 84.65 0.44 1.88 16 13 N -0.91 -50.07 9.68 21.45 0.21 -49.86 16 14 Si 0.96 43.45 29.54 68.60 2.03 45.48 16 15 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 16 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 17 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 18 C -0.09 -3.82 4.17 30.60 0.13 -3.69 16 19 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 20 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 21 H 0.06 1.34 6.57 -2.39 -0.02 1.32 16 22 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 23 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.08 2.14 6.57 -2.39 -0.02 2.12 16 26 H 0.04 1.89 7.68 -2.39 -0.02 1.87 16 27 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.06 3.34 6.07 -2.39 -0.01 3.33 16 29 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.37 20.53 7.14 -74.05 -0.53 20.00 16 31 H 0.27 13.91 8.31 -92.70 -0.77 13.14 16 32 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -57.74 254.02 3.13 -54.61 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: 0.54 Total: 26.75 kcal Atomic # 6 Polarization: -45.32 SS G_CDS: 2.08 Total: -43.23 kcal Atomic # 7 Polarization: -50.07 SS G_CDS: 0.21 Total: -49.86 kcal Atomic # 8 Polarization: -32.02 SS G_CDS: -1.73 Total: -33.75 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -57.74 3.13 -54.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879101.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.114 kcal (2) G-P(sol) polarization free energy of solvation -57.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds