Wall clock time and date at job start Mon Mar 30 2020 02:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47102 * 2 1 4 4 H 1.08992 * 109.47120 * 305.00835 * 3 2 1 5 5 C 1.53004 * 109.46664 * 65.00507 * 3 2 1 6 6 C 1.52999 * 109.46749 * 179.97438 * 5 3 2 7 7 C 1.52996 * 109.47489 * 299.99967 * 6 5 3 8 8 C 1.52994 * 109.47109 * 60.00273 * 7 6 5 9 9 O 1.42895 * 109.47300 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.47459 * 59.99633 * 8 7 6 11 11 H 1.07997 * 120.00791 * 239.73142 * 10 8 7 12 12 C 1.37880 * 119.99643 * 59.73591 * 10 8 7 13 13 N 1.31509 * 119.99921 * 6.19197 * 12 10 8 14 14 Si 1.86804 * 119.99948 * 186.19718 * 12 10 8 15 15 H 1.48497 * 109.47362 * 94.98123 * 14 12 10 16 16 H 1.48500 * 109.46697 * 214.98408 * 14 12 10 17 17 H 1.48496 * 109.46793 * 334.98160 * 14 12 10 18 18 C 1.53000 * 109.47007 * 185.00039 * 3 2 1 19 19 H 1.09005 * 109.47089 * 299.99403 * 1 2 3 20 20 H 1.09000 * 109.47404 * 59.99513 * 1 2 3 21 21 H 1.09001 * 109.46975 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.47089 * 240.00597 * 2 1 3 23 23 H 1.09000 * 109.47404 * 120.00487 * 2 1 3 24 24 H 1.09004 * 109.47092 * 299.99884 * 5 3 2 25 25 H 1.09001 * 109.46970 * 59.99719 * 5 3 2 26 26 H 1.09004 * 109.46630 * 179.97438 * 6 5 3 27 27 H 1.09001 * 109.46908 * 60.00592 * 6 5 3 28 28 H 1.09004 * 109.46858 * 299.99995 * 7 6 5 29 29 H 1.09001 * 109.47120 * 179.97438 * 7 6 5 30 30 H 0.96701 * 113.99571 * 299.99688 * 9 8 7 31 31 H 0.97005 * 120.00008 * 180.02562 * 13 12 10 32 32 H 1.08994 * 109.47133 * 300.00128 * 18 3 2 33 33 H 1.09003 * 109.46906 * 60.00372 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 1.6352 2.1265 1.3075 6 6 2.1458 3.5688 1.3078 7 6 3.6706 3.5701 1.1822 8 6 4.0753 2.8863 -0.1251 9 8 5.4994 2.8870 -0.2421 10 6 3.4747 3.6318 -1.2890 11 1 2.8002 3.1263 -1.9641 12 6 3.7865 4.9595 -1.4919 13 7 4.6992 5.5421 -0.7455 14 14 2.9125 5.9307 -2.8269 15 1 1.7603 6.6579 -2.2363 16 1 3.8573 6.9055 -3.4289 17 1 2.4251 5.0006 -3.8769 18 6 3.5648 1.4443 -0.1257 19 1 -0.3633 0.5138 0.8901 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5138 -0.8901 23 1 1.8933 -0.5139 0.8899 24 1 0.5489 2.1251 1.3971 25 1 2.0699 1.5873 2.1492 26 1 1.8570 4.0561 2.2391 27 1 1.7114 4.1081 0.4660 28 1 4.1049 3.0308 2.0241 29 1 4.0342 4.5977 1.1820 30 1 5.8930 3.7703 -0.2484 31 1 4.9182 6.4763 -0.8880 32 1 3.9994 0.9053 0.7160 33 1 3.8531 0.9571 -1.0572 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085879106.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:28 Heat of formation + Delta-G solvation = -87.110176 kcal Electronic energy + Delta-G solvation = -13711.746155 eV Core-core repulsion = 11542.900717 eV Total energy + Delta-G solvation = -2168.845438 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.37502 -35.00574 -32.31129 -31.86653 -29.24303 -27.62049 -25.01513 -23.02506 -21.09912 -19.71193 -18.75141 -16.35408 -15.02984 -14.78571 -14.24336 -13.86737 -13.29646 -12.95182 -12.88366 -12.29646 -11.90363 -11.52896 -11.34689 -11.14533 -10.86188 -10.62217 -10.46627 -10.43442 -10.20941 -9.97655 -9.71529 -9.49282 -9.31169 -8.79774 -8.42525 -7.86044 -6.09685 -4.15525 3.25683 3.33769 3.37164 4.37700 5.13600 5.34872 5.40469 5.56331 5.78102 5.95791 5.97830 6.16359 6.28038 6.33673 6.40452 6.54495 6.55615 6.63054 6.66630 6.78490 6.85617 6.93659 6.98244 7.24673 7.40528 7.45984 7.63644 7.75271 8.06541 8.34372 8.85583 9.50033 9.72219 10.95366 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.035385 B = 0.013608 C = 0.012022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.107219 B = 2057.097255 C = 2328.574454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.077 4.077 4 H 0.079 0.921 5 C -0.107 4.107 6 C -0.103 4.103 7 C -0.132 4.132 8 C 0.247 3.753 9 O -0.599 6.599 10 C -0.521 4.521 11 H 0.059 0.941 12 C 0.068 3.932 13 N -0.900 5.900 14 Si 0.891 3.109 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.274 1.274 18 C -0.088 4.088 19 H 0.054 0.946 20 H 0.052 0.948 21 H 0.044 0.956 22 H 0.056 0.944 23 H 0.053 0.947 24 H 0.048 0.952 25 H 0.046 0.954 26 H 0.034 0.966 27 H 0.070 0.930 28 H 0.022 0.978 29 H 0.083 0.917 30 H 0.381 0.619 31 H 0.265 0.735 32 H 0.038 0.962 33 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.790 -5.051 2.487 8.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.096 4.096 4 H 0.097 0.903 5 C -0.144 4.144 6 C -0.141 4.141 7 C -0.171 4.171 8 C 0.208 3.792 9 O -0.409 6.409 10 C -0.559 4.559 11 H 0.078 0.922 12 C -0.133 4.133 13 N -0.542 5.542 14 Si 0.720 3.280 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.126 4.126 19 H 0.073 0.927 20 H 0.071 0.929 21 H 0.063 0.937 22 H 0.075 0.925 23 H 0.072 0.928 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.053 0.947 27 H 0.088 0.912 28 H 0.041 0.959 29 H 0.102 0.898 30 H 0.232 0.768 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.796 -5.530 2.494 8.390 hybrid contribution -0.395 1.290 -0.672 1.507 sum -6.191 -4.240 1.822 7.721 Atomic orbital electron populations 1.21809 0.96657 1.00496 1.01822 1.21610 0.95153 0.97870 1.01144 1.21068 0.96069 0.93860 0.98557 0.90313 1.21570 0.98816 0.97042 0.96992 1.21355 0.97567 0.95223 0.99942 1.22060 0.94208 1.03150 0.97648 1.18625 0.78876 0.90005 0.91694 1.86079 1.22487 1.35434 1.96876 1.21752 1.27168 0.95397 1.11596 0.92245 1.24973 0.94737 0.97622 0.95956 1.69544 1.31569 1.12794 1.40255 0.86584 0.79527 0.79888 0.82051 1.20680 1.21233 1.19854 1.21350 0.93689 0.97901 0.99655 0.92683 0.92918 0.93697 0.92550 0.92776 0.93362 0.93517 0.94742 0.91166 0.95935 0.89839 0.76775 0.92496 0.94311 0.93142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.67 37.16 0.36 -1.67 16 2 C -0.12 -1.88 5.40 -26.73 -0.14 -2.02 16 3 C -0.08 -1.47 1.96 -90.62 -0.18 -1.64 16 4 H 0.08 1.63 6.62 -51.93 -0.34 1.28 16 5 C -0.11 -1.95 4.96 -26.73 -0.13 -2.09 16 6 C -0.10 -2.16 5.70 -26.73 -0.15 -2.32 16 7 C -0.13 -3.16 4.86 -26.74 -0.13 -3.29 16 8 C 0.25 6.26 0.84 -91.80 -0.08 6.18 16 9 O -0.60 -16.34 12.96 -35.23 -0.46 -16.79 16 10 C -0.52 -13.90 6.29 -34.44 -0.22 -14.12 16 11 H 0.06 1.59 6.73 -52.49 -0.35 1.24 16 12 C 0.07 1.80 5.19 -17.82 -0.09 1.71 16 13 N -0.90 -24.33 9.75 55.43 0.54 -23.79 16 14 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 15 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 16 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 18 C -0.09 -1.96 4.34 -26.75 -0.12 -2.07 16 19 H 0.05 0.72 6.57 -51.93 -0.34 0.38 16 20 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 21 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.05 0.78 6.57 -51.93 -0.34 0.44 16 25 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 1.59 7.22 -51.93 -0.37 1.22 16 28 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 2.17 6.29 -51.93 -0.33 1.85 16 30 H 0.38 10.52 6.96 45.56 0.32 10.84 16 31 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 32 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 251.32 15.07 3.79 3.79 Total: -1.00 -27.14 251.32 -6.73 -33.87 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -4.70 Total: 8.42 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: -0.88 Total: -21.33 kcal Atomic # 7 Polarization: -24.33 SS G_CDS: 0.54 Total: -23.79 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: -0.46 Total: -16.79 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -27.14 -6.73 -33.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879106.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.241 kcal (2) G-P(sol) polarization free energy of solvation -27.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds