Wall clock time and date at job start Mon Mar 30 2020 02:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47102 * 2 1 4 4 H 1.08992 * 109.47120 * 305.00835 * 3 2 1 5 5 C 1.53004 * 109.46664 * 65.00507 * 3 2 1 6 6 C 1.52999 * 109.46749 * 179.97438 * 5 3 2 7 7 C 1.52996 * 109.47489 * 299.99967 * 6 5 3 8 8 C 1.52994 * 109.47109 * 60.00273 * 7 6 5 9 9 O 1.42895 * 109.47300 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.47459 * 59.99633 * 8 7 6 11 11 H 1.07997 * 120.00791 * 239.73142 * 10 8 7 12 12 C 1.37880 * 119.99643 * 59.73591 * 10 8 7 13 13 N 1.31509 * 119.99921 * 6.19197 * 12 10 8 14 14 Si 1.86804 * 119.99948 * 186.19718 * 12 10 8 15 15 H 1.48497 * 109.47362 * 94.98123 * 14 12 10 16 16 H 1.48500 * 109.46697 * 214.98408 * 14 12 10 17 17 H 1.48496 * 109.46793 * 334.98160 * 14 12 10 18 18 C 1.53000 * 109.47007 * 185.00039 * 3 2 1 19 19 H 1.09005 * 109.47089 * 299.99403 * 1 2 3 20 20 H 1.09000 * 109.47404 * 59.99513 * 1 2 3 21 21 H 1.09001 * 109.46975 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.47089 * 240.00597 * 2 1 3 23 23 H 1.09000 * 109.47404 * 120.00487 * 2 1 3 24 24 H 1.09004 * 109.47092 * 299.99884 * 5 3 2 25 25 H 1.09001 * 109.46970 * 59.99719 * 5 3 2 26 26 H 1.09004 * 109.46630 * 179.97438 * 6 5 3 27 27 H 1.09001 * 109.46908 * 60.00592 * 6 5 3 28 28 H 1.09004 * 109.46858 * 299.99995 * 7 6 5 29 29 H 1.09001 * 109.47120 * 179.97438 * 7 6 5 30 30 H 0.96701 * 113.99571 * 299.99688 * 9 8 7 31 31 H 0.97005 * 120.00008 * 180.02562 * 13 12 10 32 32 H 1.08994 * 109.47133 * 300.00128 * 18 3 2 33 33 H 1.09003 * 109.46906 * 60.00372 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 1.6352 2.1265 1.3075 6 6 2.1458 3.5688 1.3078 7 6 3.6706 3.5701 1.1822 8 6 4.0753 2.8863 -0.1251 9 8 5.4994 2.8870 -0.2421 10 6 3.4747 3.6318 -1.2890 11 1 2.8002 3.1263 -1.9641 12 6 3.7865 4.9595 -1.4919 13 7 4.6992 5.5421 -0.7455 14 14 2.9125 5.9307 -2.8269 15 1 1.7603 6.6579 -2.2363 16 1 3.8573 6.9055 -3.4289 17 1 2.4251 5.0006 -3.8769 18 6 3.5648 1.4443 -0.1257 19 1 -0.3633 0.5138 0.8901 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5138 -0.8901 23 1 1.8933 -0.5139 0.8899 24 1 0.5489 2.1251 1.3971 25 1 2.0699 1.5873 2.1492 26 1 1.8570 4.0561 2.2391 27 1 1.7114 4.1081 0.4660 28 1 4.1049 3.0308 2.0241 29 1 4.0342 4.5977 1.1820 30 1 5.8930 3.7703 -0.2484 31 1 4.9182 6.4763 -0.8880 32 1 3.9994 0.9053 0.7160 33 1 3.8531 0.9571 -1.0572 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085879106.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:28 Heat of formation + Delta-G solvation = -103.525736 kcal Electronic energy + Delta-G solvation = -13712.457987 eV Core-core repulsion = 11542.900717 eV Total energy + Delta-G solvation = -2169.557271 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.11616 -36.77582 -34.18077 -33.65053 -30.95570 -29.23867 -27.00709 -24.42717 -22.82088 -21.27080 -20.57705 -18.33901 -17.05758 -16.57410 -15.67897 -15.58596 -14.98599 -14.71520 -14.28540 -13.97184 -13.56403 -13.26498 -13.00361 -12.83062 -12.58008 -12.32852 -12.28598 -12.00239 -11.84292 -11.60908 -11.45625 -11.15202 -10.96566 -10.64391 -10.41901 -9.88441 -8.13109 -6.25541 1.39100 1.42027 1.50778 2.41482 3.09759 3.84360 4.01683 4.16203 4.43720 4.50110 4.55135 4.65403 4.76195 4.86883 4.95796 5.01448 5.01977 5.11920 5.15899 5.21232 5.27886 5.32628 5.46237 5.61394 5.63874 5.70645 5.75266 5.84231 6.09433 6.32330 6.78878 7.41801 7.58047 8.90406 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.035385 B = 0.013608 C = 0.012022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.107219 B = 2057.097255 C = 2328.574454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C -0.072 4.072 4 H 0.058 0.942 5 C -0.101 4.101 6 C -0.100 4.100 7 C -0.127 4.127 8 C 0.229 3.771 9 O -0.613 6.613 10 C -0.534 4.534 11 H 0.052 0.948 12 C 0.027 3.973 13 N -0.917 5.917 14 Si 0.949 3.051 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.273 1.273 18 C -0.086 4.086 19 H 0.061 0.939 20 H 0.048 0.952 21 H 0.066 0.934 22 H 0.055 0.945 23 H 0.065 0.935 24 H 0.076 0.924 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.048 0.952 28 H 0.025 0.975 29 H 0.055 0.945 30 H 0.375 0.625 31 H 0.266 0.734 32 H 0.043 0.957 33 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.462 -5.780 2.848 9.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.153 4.153 3 C -0.091 4.091 4 H 0.077 0.923 5 C -0.138 4.138 6 C -0.138 4.138 7 C -0.165 4.165 8 C 0.191 3.809 9 O -0.422 6.422 10 C -0.572 4.572 11 H 0.070 0.930 12 C -0.172 4.172 13 N -0.559 5.559 14 Si 0.775 3.225 15 H -0.200 1.200 16 H -0.211 1.211 17 H -0.198 1.198 18 C -0.123 4.123 19 H 0.080 0.920 20 H 0.067 0.933 21 H 0.085 0.915 22 H 0.073 0.927 23 H 0.083 0.917 24 H 0.094 0.906 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.044 0.956 29 H 0.074 0.926 30 H 0.225 0.775 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -7.475 -6.270 2.859 10.167 hybrid contribution 0.189 1.517 -0.783 1.718 sum -7.286 -4.752 2.076 8.943 Atomic orbital electron populations 1.21781 0.94653 1.02024 1.01974 1.21553 0.96843 0.95187 1.01702 1.21011 0.93470 0.96271 0.98332 0.92332 1.21540 1.00549 0.94900 0.96813 1.21306 0.95186 0.97326 0.99981 1.21941 0.96457 1.01196 0.96948 1.18995 0.77743 0.92104 0.92108 1.86076 1.24067 1.35057 1.97027 1.21890 1.27336 0.95908 1.12114 0.92970 1.25620 0.95307 0.98429 0.97850 1.69640 1.32139 1.12940 1.41162 0.85690 0.78606 0.78509 0.79712 1.19983 1.21093 1.19773 1.21357 0.96179 0.95672 0.99133 0.91982 0.93323 0.91545 0.92656 0.91651 0.90559 0.92288 0.92811 0.93309 0.95578 0.92605 0.77506 0.92431 0.93825 0.94469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 9.67 71.98 0.70 -2.75 16 2 C -0.12 -3.29 5.40 30.59 0.17 -3.12 16 3 C -0.07 -2.64 1.96 -10.79 -0.02 -2.66 16 4 H 0.06 2.37 6.62 -2.39 -0.02 2.36 16 5 C -0.10 -3.42 4.96 30.60 0.15 -3.26 16 6 C -0.10 -4.08 5.70 30.59 0.17 -3.90 16 7 C -0.13 -6.06 4.86 30.59 0.15 -5.91 16 8 C 0.23 11.70 0.84 -11.56 -0.01 11.69 16 9 O -0.61 -34.14 12.96 -148.98 -1.93 -36.07 16 10 C -0.53 -28.82 6.29 25.60 0.16 -28.66 16 11 H 0.05 2.82 6.73 -2.91 -0.02 2.81 16 12 C 0.03 1.43 5.19 84.66 0.44 1.87 16 13 N -0.92 -50.23 9.75 21.45 0.21 -50.02 16 14 Si 0.95 42.85 29.54 68.60 2.03 44.88 16 15 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 16 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 17 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 18 C -0.09 -3.76 4.34 30.58 0.13 -3.63 16 19 H 0.06 1.37 6.57 -2.38 -0.02 1.35 16 20 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 21 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 22 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 23 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.08 2.19 6.57 -2.39 -0.02 2.18 16 25 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.05 2.18 7.22 -2.39 -0.02 2.16 16 28 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.06 2.95 6.29 -2.39 -0.02 2.93 16 30 H 0.37 21.33 6.96 -74.06 -0.52 20.81 16 31 H 0.27 13.92 8.31 -92.70 -0.77 13.15 16 32 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -57.46 251.32 2.90 -54.56 By element: Atomic # 1 Polarization: 26.43 SS G_CDS: 0.56 Total: 26.99 kcal Atomic # 6 Polarization: -42.37 SS G_CDS: 2.04 Total: -40.34 kcal Atomic # 7 Polarization: -50.23 SS G_CDS: 0.21 Total: -50.02 kcal Atomic # 8 Polarization: -34.14 SS G_CDS: -1.93 Total: -36.07 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -57.46 2.90 -54.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879106.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.965 kcal (2) G-P(sol) polarization free energy of solvation -57.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds