Wall clock time and date at job start Mon Mar 30 2020 02:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47097 * 2 1 4 4 H 1.08998 * 109.47147 * 54.99926 * 3 2 1 5 5 C 1.52997 * 109.47187 * 294.99710 * 3 2 1 6 6 C 1.53002 * 109.47187 * 179.97438 * 5 3 2 7 7 C 1.52992 * 109.46933 * 60.00348 * 6 5 3 8 8 C 1.52999 * 109.47245 * 299.99697 * 7 6 5 9 9 O 1.42898 * 109.47252 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.47237 * 300.00226 * 8 7 6 11 11 H 1.07999 * 119.99864 * 25.44487 * 10 8 7 12 12 C 1.37874 * 119.99991 * 205.43336 * 10 8 7 13 13 N 1.31519 * 119.99635 * 175.63449 * 12 10 8 14 14 Si 1.86802 * 120.00322 * 355.64382 * 12 10 8 15 15 H 1.48496 * 109.47174 * 86.51538 * 14 12 10 16 16 H 1.48497 * 109.47152 * 206.51936 * 14 12 10 17 17 H 1.48500 * 109.46533 * 326.51693 * 14 12 10 18 18 C 1.53002 * 109.47062 * 175.00035 * 3 2 1 19 19 H 1.08995 * 109.47000 * 300.00174 * 1 2 3 20 20 H 1.09002 * 109.47142 * 60.00286 * 1 2 3 21 21 H 1.08996 * 109.47103 * 179.97438 * 1 2 3 22 22 H 1.09007 * 109.47377 * 240.00426 * 2 1 3 23 23 H 1.09000 * 109.47364 * 120.00202 * 2 1 3 24 24 H 1.09004 * 109.47244 * 60.00345 * 5 3 2 25 25 H 1.08998 * 109.47254 * 300.00151 * 5 3 2 26 26 H 1.08998 * 109.47147 * 300.00216 * 6 5 3 27 27 H 1.09003 * 109.46919 * 180.02562 * 6 5 3 28 28 H 1.08998 * 109.47312 * 59.99969 * 7 6 5 29 29 H 1.09009 * 109.47119 * 180.02562 * 7 6 5 30 30 H 0.96702 * 113.99663 * 54.67555 * 9 8 7 31 31 H 0.97011 * 119.99467 * 180.02562 * 13 12 10 32 32 H 1.08998 * 109.47228 * 59.99942 * 18 3 2 33 33 H 1.09003 * 109.47151 * 299.99732 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6353 2.1265 -1.3073 6 6 2.1448 3.5693 -1.3071 7 6 3.6695 3.5716 -1.1811 8 6 4.0743 2.8876 0.1263 9 8 5.4984 2.8893 0.2437 10 6 3.4729 3.6325 1.2901 11 1 2.5740 4.2151 1.1520 12 6 4.0700 3.5701 2.5313 13 7 3.5955 4.2877 3.5261 14 14 5.5531 2.4666 2.7999 15 1 6.7902 3.2024 2.4348 16 1 5.6191 2.0651 4.2280 17 1 5.4288 1.2550 1.9503 18 6 3.5648 1.4443 0.1257 19 1 -0.3633 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 1.8934 -0.5138 -0.8901 23 1 1.8934 -0.5139 0.8899 24 1 0.5490 2.1253 -1.3970 25 1 2.0699 1.5875 -2.1491 26 1 1.7098 4.1080 -0.4653 27 1 1.8560 4.0567 -2.2383 28 1 4.1045 3.0328 -2.0228 29 1 4.0324 4.5995 -1.1804 30 1 5.8982 3.7666 0.1688 31 1 4.0159 4.2441 4.3993 32 1 3.9995 0.9053 -0.7161 33 1 3.8532 0.9570 1.0571 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085879133.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:30 Heat of formation + Delta-G solvation = -81.854933 kcal Electronic energy + Delta-G solvation = -13763.545515 eV Core-core repulsion = 11594.927961 eV Total energy + Delta-G solvation = -2168.617554 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.69685 -35.46104 -32.66989 -32.09480 -29.37563 -28.04366 -24.99955 -23.06481 -21.47406 -19.85964 -18.80997 -16.86119 -14.99149 -14.96057 -14.31610 -14.21137 -13.68595 -13.09388 -12.91025 -12.41570 -12.30150 -11.80200 -11.68907 -11.42689 -10.94964 -10.75761 -10.46151 -10.23590 -10.17539 -10.12491 -9.85223 -9.55723 -9.38066 -8.76620 -8.40172 -8.13954 -6.02758 -4.11789 3.55695 3.61808 3.81051 4.64297 5.14078 5.25810 5.35417 5.52476 5.68059 5.75430 5.83083 5.85816 6.14462 6.24114 6.28493 6.31710 6.39893 6.44682 6.49061 6.57544 6.58119 6.66982 6.76330 7.00354 7.02518 7.19190 7.30741 7.47475 7.76570 8.32233 8.82092 9.00467 9.61589 11.06445 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.034271 B = 0.014995 C = 0.013429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.813855 B = 1866.862433 C = 2084.496123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C -0.077 4.077 4 H 0.088 0.912 5 C -0.107 4.107 6 C -0.110 4.110 7 C -0.127 4.127 8 C 0.216 3.784 9 O -0.571 6.571 10 C -0.545 4.545 11 H 0.080 0.920 12 C 0.069 3.931 13 N -0.899 5.899 14 Si 0.944 3.056 15 H -0.296 1.296 16 H -0.331 1.331 17 H -0.266 1.266 18 C -0.091 4.091 19 H 0.054 0.946 20 H 0.053 0.947 21 H 0.044 0.956 22 H 0.052 0.948 23 H 0.057 0.943 24 H 0.052 0.948 25 H 0.048 0.952 26 H 0.075 0.925 27 H 0.042 0.958 28 H 0.041 0.959 29 H 0.053 0.947 30 H 0.365 0.635 31 H 0.262 0.738 32 H 0.034 0.966 33 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.721 -5.053 -8.113 9.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.096 4.096 4 H 0.106 0.894 5 C -0.145 4.145 6 C -0.148 4.148 7 C -0.165 4.165 8 C 0.178 3.822 9 O -0.379 6.379 10 C -0.582 4.582 11 H 0.098 0.902 12 C -0.134 4.134 13 N -0.535 5.535 14 Si 0.781 3.219 15 H -0.224 1.224 16 H -0.263 1.263 17 H -0.192 1.192 18 C -0.129 4.129 19 H 0.073 0.927 20 H 0.072 0.928 21 H 0.063 0.937 22 H 0.071 0.929 23 H 0.076 0.924 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.093 0.907 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.072 0.928 30 H 0.213 0.787 31 H 0.071 0.929 32 H 0.053 0.947 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.834 -5.636 -7.883 10.096 hybrid contribution 0.858 0.155 0.203 0.895 sum -1.976 -5.481 -7.680 9.640 Atomic orbital electron populations 1.21804 0.96543 1.00542 1.01875 1.21583 0.95262 0.97718 1.01131 1.21054 0.95815 0.94208 0.98478 0.89369 1.21564 0.99300 0.96197 0.97423 1.21432 0.96192 0.96473 1.00687 1.22054 0.95917 1.00078 0.98407 1.19284 0.77214 0.92825 0.92925 1.86123 1.23705 1.34495 1.93571 1.21418 1.13150 1.30962 0.92692 0.90232 1.25113 0.97789 0.94830 0.95629 1.69989 1.41570 1.39904 1.02072 0.85788 0.81579 0.81866 0.72684 1.22419 1.26284 1.19237 1.21633 0.94173 0.96880 1.00225 0.92671 0.92802 0.93683 0.92931 0.92406 0.92890 0.93366 0.90692 0.93947 0.94057 0.92828 0.78739 0.92851 0.94734 0.92037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.67 37.16 0.36 -1.72 16 2 C -0.12 -1.91 5.40 -26.73 -0.14 -2.05 16 3 C -0.08 -1.46 1.97 -90.62 -0.18 -1.64 16 4 H 0.09 1.92 7.21 -51.93 -0.37 1.54 16 5 C -0.11 -1.82 4.96 -26.73 -0.13 -1.95 16 6 C -0.11 -2.01 5.70 -26.73 -0.15 -2.17 16 7 C -0.13 -2.50 5.02 -26.74 -0.13 -2.64 16 8 C 0.22 4.96 0.72 -91.74 -0.07 4.89 16 9 O -0.57 -13.15 8.39 -35.23 -0.30 -13.44 16 10 C -0.54 -14.62 7.19 -34.44 -0.25 -14.87 16 11 H 0.08 2.30 6.33 -52.49 -0.33 1.96 16 12 C 0.07 1.98 5.46 -17.82 -0.10 1.89 16 13 N -0.90 -27.35 13.96 55.43 0.77 -26.57 16 14 Si 0.94 24.44 24.33 -169.99 -4.14 20.31 16 15 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 16 H -0.33 -8.79 7.11 56.52 0.40 -8.39 16 17 H -0.27 -6.81 5.26 56.52 0.30 -6.52 16 18 C -0.09 -1.98 4.08 -26.70 -0.11 -2.08 16 19 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 20 H 0.05 0.70 6.57 -51.93 -0.34 0.36 16 21 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.05 0.81 6.57 -51.93 -0.34 0.47 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.07 1.53 6.30 -51.93 -0.33 1.20 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.05 1.04 8.14 -51.92 -0.42 0.62 16 30 H 0.37 7.46 8.94 45.56 0.41 7.87 16 31 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 32 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 1.45 5.67 -51.93 -0.29 1.16 16 LS Contribution 245.49 15.07 3.70 3.70 Total: -1.00 -29.89 245.49 -5.51 -35.40 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -4.65 Total: 2.95 kcal Atomic # 6 Polarization: -21.44 SS G_CDS: -0.90 Total: -22.34 kcal Atomic # 7 Polarization: -27.35 SS G_CDS: 0.77 Total: -26.57 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: -0.30 Total: -13.44 kcal Atomic # 14 Polarization: 24.44 SS G_CDS: -4.14 Total: 20.31 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -29.89 -5.51 -35.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879133.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.453 kcal (2) G-P(sol) polarization free energy of solvation -29.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds