Wall clock time and date at job start Mon Mar 30 2020 02:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46943 * 2 1 4 4 H 1.09002 * 109.47070 * 304.99684 * 3 2 1 5 5 C 1.52995 * 109.46925 * 64.99941 * 3 2 1 6 6 C 1.53002 * 109.46602 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.47454 * 299.99804 * 6 5 3 8 8 C 1.52997 * 109.46978 * 59.99922 * 7 6 5 9 9 O 1.42905 * 109.46921 * 60.00106 * 8 7 6 10 10 C 1.50698 * 109.47342 * 180.02562 * 8 7 6 11 11 H 1.07993 * 120.00472 * 120.00215 * 10 8 7 12 12 C 1.37882 * 119.99554 * 300.00320 * 10 8 7 13 13 N 1.31515 * 120.00420 * 359.97438 * 12 10 8 14 14 Si 1.86798 * 119.99716 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47454 * 59.99745 * 14 12 10 16 16 H 1.48503 * 109.46926 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47302 * 299.99567 * 14 12 10 18 18 C 1.52997 * 109.46817 * 184.99864 * 3 2 1 19 19 H 1.08996 * 109.47443 * 300.00027 * 1 2 3 20 20 H 1.09000 * 109.46961 * 60.00285 * 1 2 3 21 21 H 1.08998 * 109.47668 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47083 * 239.99658 * 2 1 3 23 23 H 1.09000 * 109.46961 * 119.99715 * 2 1 3 24 24 H 1.08992 * 109.47458 * 59.99987 * 5 3 2 25 25 H 1.08999 * 109.47330 * 299.98997 * 5 3 2 26 26 H 1.09004 * 109.46930 * 179.97438 * 6 5 3 27 27 H 1.09002 * 109.47067 * 59.99942 * 6 5 3 28 28 H 1.09001 * 109.46380 * 300.00332 * 7 6 5 29 29 H 1.09001 * 109.47142 * 180.02562 * 7 6 5 30 30 H 0.96696 * 114.00036 * 60.00010 * 9 8 7 31 31 H 0.97001 * 120.00306 * 180.02562 * 13 12 10 32 32 H 1.09001 * 109.47502 * 59.99482 * 18 3 2 33 33 H 1.09002 * 109.47153 * 299.99769 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 1.6351 2.1265 1.3073 6 6 2.1457 3.5688 1.3075 7 6 3.6706 3.5702 1.1821 8 6 4.0754 2.8861 -0.1251 9 8 3.5060 3.5931 -1.2289 10 6 5.5773 2.8868 -0.2484 11 1 6.1137 1.9523 -0.3199 12 6 6.2666 4.0808 -0.2698 13 7 5.6134 5.2189 -0.1832 14 14 8.1284 4.0817 -0.4219 15 1 8.5218 3.4175 -1.6905 16 1 8.6243 5.4815 -0.4222 17 1 8.7191 3.3471 0.7254 18 6 3.5648 1.4443 -0.1257 19 1 -0.3634 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 2.0697 1.5875 2.1491 25 1 0.5488 2.1253 1.3968 26 1 1.8569 4.0563 2.2387 27 1 1.7114 4.1081 0.4656 28 1 4.1047 3.0309 2.0240 29 1 4.0343 4.5977 1.1827 30 1 3.7864 4.5164 -1.2913 31 1 6.0983 6.0589 -0.1987 32 1 3.8532 0.9569 -1.0570 33 1 3.9994 0.9053 0.7162 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085879136.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:31 Heat of formation + Delta-G solvation = -88.495155 kcal Electronic energy + Delta-G solvation = -13576.250206 eV Core-core repulsion = 11407.344710 eV Total energy + Delta-G solvation = -2168.905496 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.34788 -34.95411 -32.11021 -31.97331 -29.41818 -27.88034 -24.89943 -22.99531 -21.09137 -19.73970 -18.53617 -16.71014 -14.91777 -14.58690 -14.27816 -14.10715 -13.31204 -13.15142 -12.79428 -12.11050 -11.84387 -11.58823 -11.30990 -11.16457 -10.93644 -10.76762 -10.50739 -10.43057 -10.19372 -9.96635 -9.84173 -9.49004 -9.42398 -8.72014 -8.46695 -7.84324 -6.07979 -4.19170 3.28084 3.32654 3.35953 4.37009 5.15316 5.34033 5.37934 5.54108 5.73417 5.91837 5.93974 6.20746 6.27924 6.28600 6.32856 6.40766 6.56846 6.58862 6.64484 6.70980 6.78341 6.93232 7.01311 7.20678 7.26942 7.46608 7.68625 7.81889 8.11978 8.31055 8.83507 9.49222 9.68374 10.93949 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.058534 B = 0.010460 C = 0.009722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.243392 B = 2676.276384 C = 2879.305005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C -0.084 4.084 4 H 0.072 0.928 5 C -0.107 4.107 6 C -0.116 4.116 7 C -0.136 4.136 8 C 0.253 3.747 9 O -0.591 6.591 10 C -0.534 4.534 11 H 0.056 0.944 12 C 0.068 3.932 13 N -0.899 5.899 14 Si 0.897 3.103 15 H -0.277 1.277 16 H -0.286 1.286 17 H -0.277 1.277 18 C -0.089 4.089 19 H 0.054 0.946 20 H 0.051 0.949 21 H 0.044 0.956 22 H 0.056 0.944 23 H 0.054 0.946 24 H 0.049 0.951 25 H 0.046 0.954 26 H 0.037 0.963 27 H 0.057 0.943 28 H 0.038 0.962 29 H 0.091 0.909 30 H 0.377 0.623 31 H 0.266 0.734 32 H 0.050 0.950 33 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.211 -4.812 1.978 8.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.102 4.102 4 H 0.090 0.910 5 C -0.145 4.145 6 C -0.154 4.154 7 C -0.174 4.174 8 C 0.213 3.787 9 O -0.400 6.400 10 C -0.572 4.572 11 H 0.075 0.925 12 C -0.133 4.133 13 N -0.540 5.540 14 Si 0.724 3.276 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.203 1.203 18 C -0.126 4.126 19 H 0.073 0.927 20 H 0.070 0.930 21 H 0.063 0.937 22 H 0.074 0.926 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.056 0.944 27 H 0.076 0.924 28 H 0.057 0.943 29 H 0.109 0.891 30 H 0.226 0.774 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.460 -5.204 1.880 8.506 hybrid contribution 1.398 0.596 0.130 1.525 sum -5.062 -4.608 2.009 7.134 Atomic orbital electron populations 1.21809 0.96745 1.00506 1.01713 1.21617 0.95096 0.97913 1.01194 1.21132 0.97168 0.93905 0.98004 0.90970 1.21570 0.98702 0.96923 0.97258 1.21530 0.98862 0.95320 0.99644 1.22165 0.91878 1.04308 0.99078 1.18541 0.90153 0.86861 0.83123 1.86091 1.73166 1.29048 1.51676 1.21804 0.92716 0.92749 1.49975 0.92527 1.24998 0.98730 0.95498 0.94045 1.69595 1.35783 0.97461 1.51196 0.86587 0.85286 0.76971 0.78712 1.20213 1.21205 1.20276 1.21482 0.92999 0.98034 1.00135 0.92739 0.93007 0.93680 0.92551 0.92685 0.93209 0.93519 0.94407 0.92385 0.94337 0.89115 0.77354 0.92434 0.93156 0.92774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.67 37.16 0.36 -1.64 16 2 C -0.12 -1.87 5.40 -26.73 -0.14 -2.01 16 3 C -0.08 -1.57 2.04 -90.62 -0.19 -1.76 16 4 H 0.07 1.48 7.68 -51.93 -0.40 1.08 16 5 C -0.11 -1.93 4.96 -26.73 -0.13 -2.06 16 6 C -0.12 -2.35 5.78 -26.73 -0.15 -2.51 16 7 C -0.14 -3.24 4.69 -26.73 -0.13 -3.37 16 8 C 0.25 6.36 0.66 -91.80 -0.06 6.29 16 9 O -0.59 -15.54 11.61 -35.23 -0.41 -15.95 16 10 C -0.53 -14.70 8.25 -34.44 -0.28 -14.98 16 11 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 12 C 0.07 1.84 5.22 -17.82 -0.09 1.75 16 13 N -0.90 -24.42 9.69 55.43 0.54 -23.88 16 14 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 16 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 C -0.09 -1.96 4.16 -26.76 -0.11 -2.07 16 19 H 0.05 0.70 6.56 -51.93 -0.34 0.36 16 20 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 21 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 22 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.05 0.75 6.57 -51.93 -0.34 0.41 16 26 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.06 1.22 7.68 -51.93 -0.40 0.82 16 28 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 30 H 0.38 10.16 7.15 45.56 0.33 10.49 16 31 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 254.03 15.07 3.83 3.83 Total: -1.00 -27.13 254.03 -6.81 -33.95 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -4.82 Total: 8.32 kcal Atomic # 6 Polarization: -21.42 SS G_CDS: -0.93 Total: -22.35 kcal Atomic # 7 Polarization: -24.42 SS G_CDS: 0.54 Total: -23.88 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.41 Total: -15.95 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -27.13 -6.81 -33.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879136.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.549 kcal (2) G-P(sol) polarization free energy of solvation -27.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds