Wall clock time and date at job start Mon Mar 30 2020 02:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47178 * 2 1 4 4 H 1.09003 * 109.46554 * 54.99884 * 3 2 1 5 5 C 1.53000 * 109.47398 * 295.00378 * 3 2 1 6 6 C 1.52997 * 109.47637 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.46861 * 59.99503 * 6 5 3 8 8 C 1.53004 * 109.47275 * 300.00297 * 7 6 5 9 9 C 1.52992 * 109.47511 * 175.00107 * 3 2 1 10 10 O 1.42908 * 109.46838 * 300.00263 * 9 3 2 11 11 C 1.50700 * 109.47160 * 60.00080 * 9 3 2 12 12 H 1.07995 * 120.00113 * 5.33251 * 11 9 3 13 13 C 1.37877 * 119.99819 * 185.33885 * 11 9 3 14 14 N 1.31516 * 120.00203 * 353.17073 * 13 11 9 15 15 Si 1.86804 * 119.99887 * 173.17890 * 13 11 9 16 16 H 1.48497 * 109.46919 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47354 * 119.99259 * 15 13 11 18 18 H 1.48499 * 109.47075 * 239.99736 * 15 13 11 19 19 H 1.09010 * 109.47130 * 179.97438 * 1 2 3 20 20 H 1.08996 * 109.47643 * 299.99912 * 1 2 3 21 21 H 1.09001 * 109.47345 * 60.00357 * 1 2 3 22 22 H 1.09006 * 109.47139 * 240.00661 * 2 1 3 23 23 H 1.08998 * 109.47547 * 120.00129 * 2 1 3 24 24 H 1.09001 * 109.46727 * 300.00084 * 5 3 2 25 25 H 1.09000 * 109.47090 * 59.99096 * 5 3 2 26 26 H 1.08990 * 109.47571 * 180.02562 * 6 5 3 27 27 H 1.09001 * 109.46879 * 300.00214 * 6 5 3 28 28 H 1.09003 * 109.47311 * 60.00613 * 7 6 5 29 29 H 1.08998 * 109.46820 * 180.02562 * 7 6 5 30 30 H 1.09001 * 109.47071 * 299.99612 * 8 7 6 31 31 H 1.09002 * 109.46724 * 179.97438 * 8 7 6 32 32 H 0.96705 * 113.99791 * 173.64983 * 10 9 3 33 33 H 0.96999 * 120.00133 * 5.32314 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 2.1446 3.5693 -1.3071 7 6 3.6694 3.5717 -1.1810 8 6 4.0742 2.8876 0.1263 9 6 3.5647 1.4444 0.1257 10 8 3.9428 0.8055 1.3468 11 6 4.1656 0.6992 -1.0382 12 1 3.5316 0.3421 -1.8361 13 6 5.5250 0.4732 -1.0842 14 7 6.3135 1.0211 -0.1855 15 14 6.2467 -0.6110 -2.4233 16 1 5.1563 -1.1030 -3.3031 17 1 7.2160 0.1751 -3.2280 18 1 6.9414 -1.7676 -1.8029 19 1 -0.3634 -1.0278 -0.0005 20 1 -0.3634 0.5138 0.8899 21 1 -0.3634 0.5138 -0.8900 22 1 1.8933 -0.5138 -0.8901 23 1 1.8934 -0.5138 0.8899 24 1 2.0698 1.5876 -2.1491 25 1 0.5489 2.1252 -1.3969 26 1 1.8558 4.0568 -2.2381 27 1 1.7097 4.1080 -0.4652 28 1 4.1044 3.0329 -2.0229 29 1 4.0323 4.5995 -1.1804 30 1 3.6393 3.4264 0.9681 31 1 5.1605 2.8889 0.2158 32 1 4.8968 0.6835 1.4479 33 1 5.9329 1.5202 0.5540 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085879139.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:32 Heat of formation + Delta-G solvation = -77.923221 kcal Electronic energy + Delta-G solvation = -13967.058516 eV Core-core repulsion = 11798.611453 eV Total energy + Delta-G solvation = -2168.447062 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.74752 -34.71586 -33.19319 -31.83645 -28.58339 -28.09129 -24.67489 -23.04636 -21.03150 -19.84069 -18.99597 -17.08983 -15.27752 -14.37337 -14.02610 -13.88077 -13.37062 -13.13783 -12.56706 -12.56320 -11.94772 -11.62752 -11.27012 -11.04680 -10.78097 -10.61853 -10.54509 -10.31643 -10.12638 -10.00468 -9.82911 -9.67957 -9.28851 -8.63237 -8.44559 -7.85464 -6.33746 -4.16375 3.40436 3.42946 3.56543 4.46153 5.16965 5.47858 5.59363 5.62528 5.84342 5.86616 5.95802 6.13366 6.24386 6.40312 6.40580 6.48483 6.52345 6.56616 6.67763 6.68821 6.79801 6.92522 7.11004 7.16201 7.25963 7.31216 7.45262 7.50401 8.11070 8.37898 8.74668 9.20819 9.52530 10.90472 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.031243 B = 0.015857 C = 0.013998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.980341 B = 1765.344756 C = 1999.746788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.105 4.105 3 C -0.056 4.056 4 H 0.043 0.957 5 C -0.104 4.104 6 C -0.113 4.113 7 C -0.100 4.100 8 C -0.144 4.144 9 C 0.236 3.764 10 O -0.596 6.596 11 C -0.595 4.595 12 H 0.058 0.942 13 C 0.024 3.976 14 N -0.919 5.919 15 Si 1.070 2.930 16 H -0.289 1.289 17 H -0.288 1.288 18 H -0.287 1.287 19 H 0.043 0.957 20 H 0.044 0.956 21 H 0.049 0.951 22 H 0.065 0.935 23 H 0.061 0.939 24 H 0.071 0.929 25 H 0.046 0.954 26 H 0.047 0.953 27 H 0.046 0.954 28 H 0.074 0.926 29 H 0.036 0.964 30 H 0.027 0.973 31 H 0.071 0.929 32 H 0.369 0.631 33 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.629 1.501 -1.789 7.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.143 4.143 3 C -0.074 4.074 4 H 0.062 0.938 5 C -0.142 4.142 6 C -0.151 4.151 7 C -0.138 4.138 8 C -0.182 4.182 9 C 0.197 3.803 10 O -0.405 6.405 11 C -0.633 4.633 12 H 0.076 0.924 13 C -0.178 4.178 14 N -0.564 5.564 15 Si 0.898 3.102 16 H -0.215 1.215 17 H -0.214 1.214 18 H -0.213 1.213 19 H 0.062 0.938 20 H 0.063 0.937 21 H 0.068 0.932 22 H 0.084 0.916 23 H 0.080 0.920 24 H 0.090 0.910 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.092 0.908 29 H 0.055 0.945 30 H 0.046 0.954 31 H 0.089 0.911 32 H 0.219 0.781 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.877 0.938 -2.305 6.382 hybrid contribution -0.776 0.664 0.539 1.155 sum -6.653 1.602 -1.766 7.067 Atomic orbital electron populations 1.21891 0.98007 1.00242 1.00788 1.21378 0.92786 0.97439 1.02694 1.20843 0.95818 0.95002 0.95761 0.93824 1.21530 0.98213 0.95485 0.98948 1.21488 0.97066 0.96855 0.99671 1.21303 0.94521 0.98081 0.99856 1.22306 1.01958 0.98662 0.95287 1.18869 0.90367 0.87915 0.83136 1.86235 1.28825 1.82734 1.42691 1.22484 0.95095 1.38158 1.07573 0.92380 1.25771 0.93891 0.96816 1.01366 1.70934 1.38072 1.33159 1.14185 0.83534 0.75370 0.76150 0.75109 1.21517 1.21447 1.21327 0.93821 0.93733 0.93232 0.91617 0.91979 0.91046 0.93574 0.93417 0.93531 0.90753 0.94538 0.95387 0.91100 0.78129 0.91333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.67 37.16 0.36 -2.12 16 2 C -0.11 -2.15 4.98 -26.73 -0.13 -2.28 16 3 C -0.06 -1.20 1.69 -90.62 -0.15 -1.35 16 4 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 5 C -0.10 -2.01 4.73 -26.73 -0.13 -2.13 16 6 C -0.11 -2.08 5.92 -26.73 -0.16 -2.24 16 7 C -0.10 -2.09 5.70 -26.73 -0.15 -2.25 16 8 C -0.14 -3.37 4.79 -26.71 -0.13 -3.50 16 9 C 0.24 5.78 0.52 -91.75 -0.05 5.74 16 10 O -0.60 -15.54 12.21 -35.23 -0.43 -15.97 16 11 C -0.59 -15.55 5.59 -34.44 -0.19 -15.75 16 12 H 0.06 1.53 5.71 -52.49 -0.30 1.23 16 13 C 0.02 0.65 5.17 -17.82 -0.09 0.56 16 14 N -0.92 -25.81 12.45 55.43 0.69 -25.12 16 15 Si 1.07 24.46 29.91 -169.99 -5.08 19.37 16 16 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 19 H 0.04 0.64 8.14 -51.92 -0.42 0.22 16 20 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 21 H 0.05 0.76 6.57 -51.93 -0.34 0.42 16 22 H 0.07 1.41 6.90 -51.93 -0.36 1.05 16 23 H 0.06 1.36 7.54 -51.93 -0.39 0.97 16 24 H 0.07 1.47 6.52 -51.93 -0.34 1.13 16 25 H 0.05 0.78 6.56 -51.93 -0.34 0.44 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.07 1.70 7.22 -51.93 -0.37 1.32 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.07 1.80 5.44 -51.93 -0.28 1.52 16 32 H 0.37 9.74 6.00 45.56 0.27 10.01 16 33 H 0.27 7.45 3.67 -40.82 -0.15 7.31 16 LS Contribution 243.77 15.07 3.67 3.67 Total: -1.00 -27.61 243.77 -6.33 -33.94 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -4.36 Total: 9.43 kcal Atomic # 6 Polarization: -24.50 SS G_CDS: -0.82 Total: -25.32 kcal Atomic # 7 Polarization: -25.81 SS G_CDS: 0.69 Total: -25.12 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.43 Total: -15.97 kcal Atomic # 14 Polarization: 24.46 SS G_CDS: -5.08 Total: 19.37 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -27.61 -6.33 -33.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879139.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.980 kcal (2) G-P(sol) polarization free energy of solvation -27.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds