Wall clock time and date at job start Mon Mar 30 2020 02:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47531 * 2 1 4 4 H 1.09007 * 109.47280 * 304.99521 * 3 2 1 5 5 C 1.52995 * 109.47254 * 64.99450 * 3 2 1 6 6 C 1.53004 * 109.47213 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.47119 * 299.99988 * 6 5 3 8 8 C 1.53002 * 109.47123 * 60.00387 * 7 6 5 9 9 C 1.53001 * 109.47523 * 185.00027 * 3 2 1 10 10 O 1.42896 * 109.47125 * 299.99823 * 9 3 2 11 11 C 1.50698 * 109.47088 * 59.99600 * 9 3 2 12 12 H 1.07998 * 120.00538 * 1.59989 * 11 9 3 13 13 C 1.37882 * 120.00123 * 181.59875 * 11 9 3 14 14 N 1.31508 * 119.99928 * 201.11473 * 13 11 9 15 15 Si 1.86801 * 119.99852 * 21.10885 * 13 11 9 16 16 H 1.48492 * 109.47251 * 180.02562 * 15 13 11 17 17 H 1.48502 * 109.47144 * 300.00270 * 15 13 11 18 18 H 1.48498 * 109.46843 * 59.99905 * 15 13 11 19 19 H 1.09002 * 109.46820 * 59.99826 * 1 2 3 20 20 H 1.08996 * 109.47191 * 179.97438 * 1 2 3 21 21 H 1.08993 * 109.47455 * 300.00345 * 1 2 3 22 22 H 1.09003 * 109.47521 * 239.99783 * 2 1 3 23 23 H 1.09006 * 109.47225 * 119.99941 * 2 1 3 24 24 H 1.09005 * 109.47181 * 60.00575 * 5 3 2 25 25 H 1.08999 * 109.47702 * 300.00834 * 5 3 2 26 26 H 1.09006 * 109.46572 * 180.02562 * 6 5 3 27 27 H 1.08996 * 109.47263 * 60.00381 * 6 5 3 28 28 H 1.09001 * 109.47754 * 300.00069 * 7 6 5 29 29 H 1.08995 * 109.47226 * 179.97438 * 7 6 5 30 30 H 1.08995 * 109.47393 * 180.02562 * 8 7 6 31 31 H 1.09001 * 109.47065 * 59.99261 * 8 7 6 32 32 H 0.96696 * 114.00605 * 187.73058 * 10 9 3 33 33 H 0.96995 * 120.00377 * 354.82726 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 1.6352 2.1265 1.3072 6 6 2.1448 3.5692 1.3069 7 6 3.6696 3.5715 1.1811 8 6 4.0744 2.8875 -0.1263 9 6 3.5649 1.4442 -0.1257 10 8 4.1346 0.7376 0.9779 11 6 3.9635 0.7704 -1.4134 12 1 3.2046 0.4029 -2.0881 13 6 5.2973 0.6230 -1.7302 14 7 5.6592 0.4325 -2.9801 15 14 6.5904 0.6941 -0.3839 16 1 7.9374 0.5100 -0.9811 17 1 6.5265 2.0134 0.2947 18 1 6.3352 -0.3840 0.6049 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 1.8934 -0.5139 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 2.0698 1.5876 2.1491 25 1 0.5489 2.1252 1.3969 26 1 1.8567 4.0564 2.2386 27 1 1.7099 4.1080 0.4652 28 1 4.1046 3.0327 2.0229 29 1 4.0326 4.5992 1.1804 30 1 5.1607 2.8887 -0.2158 31 1 3.6394 3.4262 -0.9681 32 1 5.0984 0.7984 1.0286 33 1 4.9851 0.3207 -3.6685 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085879145.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:34 Heat of formation + Delta-G solvation = -89.820560 kcal Electronic energy + Delta-G solvation = -13919.773272 eV Core-core repulsion = 11750.810302 eV Total energy + Delta-G solvation = -2168.962969 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.53816 -36.24705 -34.77812 -34.52153 -30.97438 -29.78884 -26.38183 -24.70158 -22.70135 -21.43031 -20.51481 -19.71003 -17.60307 -16.53945 -15.81414 -15.58039 -15.24611 -14.97709 -14.36943 -14.09974 -13.85212 -13.53103 -13.32166 -12.99017 -12.46077 -12.25664 -12.17662 -11.89565 -11.76411 -11.56149 -11.45811 -11.29012 -11.12105 -10.79181 -10.27163 -10.08333 -8.75721 -6.43121 1.27659 1.41466 1.61003 2.36082 2.94347 3.74092 3.93276 4.02811 4.11335 4.30701 4.40255 4.50160 4.57650 4.72070 4.73952 4.85559 4.92724 4.95791 5.09563 5.19405 5.20738 5.30204 5.31994 5.41795 5.49771 5.54964 5.65245 5.75629 5.97968 6.04949 6.52500 6.96006 7.35636 8.56051 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.034313 B = 0.016832 C = 0.013445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.830905 B = 1663.089253 C = 2082.021140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.106 4.106 3 C -0.058 4.058 4 H 0.052 0.948 5 C -0.107 4.107 6 C -0.112 4.112 7 C -0.116 4.116 8 C -0.151 4.151 9 C 0.222 3.778 10 O -0.575 6.575 11 C -0.619 4.619 12 H 0.024 0.976 13 C -0.019 4.019 14 N -0.930 5.930 15 Si 1.071 2.929 16 H -0.296 1.296 17 H -0.233 1.233 18 H -0.259 1.259 19 H 0.048 0.952 20 H 0.057 0.943 21 H 0.070 0.930 22 H 0.030 0.970 23 H 0.052 0.948 24 H 0.059 0.941 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.343 0.657 33 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.181 5.144 10.299 13.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.144 4.144 3 C -0.077 4.077 4 H 0.070 0.930 5 C -0.145 4.145 6 C -0.149 4.149 7 C -0.154 4.154 8 C -0.189 4.189 9 C 0.183 3.817 10 O -0.387 6.387 11 C -0.657 4.657 12 H 0.043 0.957 13 C -0.218 4.218 14 N -0.565 5.565 15 Si 0.896 3.104 16 H -0.224 1.224 17 H -0.158 1.158 18 H -0.186 1.186 19 H 0.067 0.933 20 H 0.076 0.924 21 H 0.089 0.911 22 H 0.049 0.951 23 H 0.070 0.930 24 H 0.078 0.922 25 H 0.093 0.907 26 H 0.101 0.899 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.194 0.806 33 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.211 4.992 10.657 12.870 hybrid contribution -0.872 -0.310 -1.479 1.745 sum -6.083 4.681 9.178 11.965 Atomic orbital electron populations 1.21795 0.94482 1.01717 1.01980 1.21337 0.95987 0.96567 1.00466 1.20937 0.93148 0.95959 0.97618 0.92951 1.21577 1.00509 0.95733 0.96640 1.21506 0.94870 0.96438 1.02124 1.21547 0.97089 0.99968 0.96766 1.22502 1.00433 0.97953 0.98032 1.19229 0.91949 0.87743 0.82753 1.86538 1.22867 1.77063 1.52221 1.22698 0.93694 1.42564 1.06722 0.95723 1.27136 1.01313 0.92714 1.00666 1.70967 1.37077 1.47604 1.00879 0.83980 0.73398 0.79569 0.73471 1.22406 1.15842 1.18550 0.93318 0.92418 0.91081 0.95130 0.92964 0.92218 0.90655 0.89940 0.92360 0.92088 0.91138 0.93228 0.93155 0.80598 0.93745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.33 9.67 71.98 0.70 -3.63 16 2 C -0.11 -4.25 5.02 30.59 0.15 -4.09 16 3 C -0.06 -2.36 1.51 -10.80 -0.02 -2.38 16 4 H 0.05 2.21 8.14 -2.38 -0.02 2.19 16 5 C -0.11 -3.46 4.81 30.59 0.15 -3.31 16 6 C -0.11 -3.24 5.92 30.59 0.18 -3.06 16 7 C -0.12 -3.83 5.78 30.59 0.18 -3.65 16 8 C -0.15 -6.41 4.58 30.61 0.14 -6.27 16 9 C 0.22 10.43 0.34 -11.52 0.00 10.43 16 10 O -0.58 -26.68 10.64 -148.98 -1.59 -28.27 16 11 C -0.62 -35.42 7.82 25.60 0.20 -35.22 16 12 H 0.02 1.55 7.03 -2.91 -0.02 1.53 16 13 C -0.02 -1.12 5.27 84.66 0.45 -0.67 16 14 N -0.93 -58.52 13.69 21.45 0.29 -58.22 16 15 Si 1.07 49.31 23.78 68.60 1.63 50.94 16 16 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 17 H -0.23 -9.28 5.54 99.48 0.55 -8.72 16 18 H -0.26 -11.12 6.73 99.48 0.67 -10.45 16 19 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 20 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 21 H 0.07 1.85 6.56 -2.39 -0.02 1.83 16 22 H 0.03 1.43 6.50 -2.39 -0.02 1.41 16 23 H 0.05 2.13 7.84 -2.38 -0.02 2.12 16 24 H 0.06 2.01 7.68 -2.38 -0.02 1.99 16 25 H 0.07 2.05 6.57 -2.39 -0.02 2.03 16 26 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 27 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.06 2.00 7.68 -2.39 -0.02 1.98 16 29 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.05 2.18 4.57 -2.39 -0.01 2.17 16 31 H 0.05 2.19 8.14 -2.39 -0.02 2.18 16 32 H 0.34 15.06 3.42 -74.06 -0.25 14.80 16 33 H 0.25 16.20 8.73 -92.71 -0.81 15.40 16 Total: -1.00 -64.73 241.78 3.06 -61.67 By element: Atomic # 1 Polarization: 25.15 SS G_CDS: 0.59 Total: 25.74 kcal Atomic # 6 Polarization: -53.99 SS G_CDS: 2.12 Total: -51.87 kcal Atomic # 7 Polarization: -58.52 SS G_CDS: 0.29 Total: -58.22 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -1.59 Total: -28.27 kcal Atomic # 14 Polarization: 49.31 SS G_CDS: 1.63 Total: 50.94 kcal Total: -64.73 3.06 -61.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879145.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.146 kcal (2) G-P(sol) polarization free energy of solvation -64.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds