Wall clock time and date at job start Mon Mar 30 2020 02:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46847 * 2 1 4 4 H 1.08992 * 109.47514 * 54.99831 * 3 2 1 5 5 C 1.53000 * 109.46886 * 294.99397 * 3 2 1 6 6 C 1.53002 * 109.46806 * 180.02562 * 5 3 2 7 7 C 1.52989 * 109.47566 * 60.00046 * 6 5 3 8 8 C 1.52997 * 109.47201 * 300.00144 * 7 6 5 9 9 C 1.52997 * 109.47232 * 59.99721 * 8 7 6 10 10 O 1.42905 * 109.47264 * 60.00091 * 9 8 7 11 11 C 1.50701 * 109.47212 * 180.02562 * 9 8 7 12 12 H 1.07999 * 119.99742 * 119.99976 * 11 9 8 13 13 C 1.37878 * 120.00001 * 299.99823 * 11 9 8 14 14 N 1.31507 * 120.00096 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 119.99524 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.46963 * 90.00517 * 15 13 11 17 17 H 1.48505 * 109.46730 * 210.00156 * 15 13 11 18 18 H 1.48499 * 109.47520 * 330.00255 * 15 13 11 19 19 H 1.08994 * 109.47037 * 300.00493 * 1 2 3 20 20 H 1.09003 * 109.46480 * 60.00398 * 1 2 3 21 21 H 1.08995 * 109.47057 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47037 * 239.99507 * 2 1 3 23 23 H 1.08995 * 109.46658 * 119.99333 * 2 1 3 24 24 H 1.09002 * 109.47398 * 300.00496 * 5 3 2 25 25 H 1.09001 * 109.47194 * 60.00677 * 5 3 2 26 26 H 1.09001 * 109.47248 * 180.02562 * 6 5 3 27 27 H 1.09002 * 109.46838 * 299.99643 * 6 5 3 28 28 H 1.09002 * 109.47371 * 59.99923 * 7 6 5 29 29 H 1.09000 * 109.47424 * 179.97438 * 7 6 5 30 30 H 1.09002 * 109.47045 * 299.99662 * 8 7 6 31 31 H 1.09001 * 109.47375 * 179.97438 * 8 7 6 32 32 H 0.96705 * 113.99788 * 60.00095 * 10 9 8 33 33 H 0.96997 * 119.99806 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 1.6353 2.1265 -1.3074 6 6 2.1458 3.5688 -1.3077 7 6 3.6705 3.5702 -1.1821 8 6 4.0753 2.8863 0.1252 9 6 3.5649 1.4439 0.1255 10 8 4.1343 0.7369 -0.9781 11 6 3.9630 0.7704 1.4135 12 1 3.2043 0.3804 2.0758 13 6 5.2958 0.6521 1.7463 14 7 6.2195 1.1275 0.9400 15 14 5.7891 -0.1821 3.3433 16 1 5.9756 -1.6359 3.1051 17 1 7.0604 0.4058 3.8366 18 1 4.7235 0.0207 4.3575 19 1 -0.3633 0.5139 0.8899 20 1 -0.3632 0.5138 -0.8901 21 1 -0.3633 -1.0276 -0.0005 22 1 1.8934 -0.5139 -0.8899 23 1 1.8933 -0.5137 0.8900 24 1 2.0700 1.5874 -2.1492 25 1 0.5490 2.1252 -1.3970 26 1 1.8571 4.0563 -2.2389 27 1 1.7114 4.1081 -0.4659 28 1 4.1050 3.0310 -2.0239 29 1 4.0342 4.5978 -1.1828 30 1 3.6409 3.4256 0.9670 31 1 5.1616 2.8869 0.2145 32 1 5.1005 0.6977 -0.9637 33 1 7.1571 1.0446 1.1744 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085879148.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:36 Heat of formation + Delta-G solvation = -85.432828 kcal Electronic energy + Delta-G solvation = -13831.135137 eV Core-core repulsion = 11662.362434 eV Total energy + Delta-G solvation = -2168.772703 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.39432 -34.03643 -33.01163 -31.97210 -28.75822 -28.07902 -24.83307 -22.93993 -20.84611 -19.65089 -18.43270 -16.80438 -15.00364 -14.58645 -14.02818 -13.66034 -13.37061 -13.14854 -12.48213 -12.12106 -11.87264 -11.71919 -11.22230 -10.96575 -10.78983 -10.63451 -10.50114 -10.26998 -10.05641 -10.00825 -9.64644 -9.47339 -9.37161 -8.60249 -8.44531 -7.80728 -6.07162 -4.17354 3.26732 3.33857 3.37156 4.37681 5.16025 5.61146 5.65610 5.75197 5.90736 5.95327 6.08588 6.27247 6.33455 6.45863 6.51373 6.53170 6.57895 6.72693 6.76992 6.84553 6.90993 7.00592 7.18899 7.28543 7.40232 7.43120 7.71377 7.83995 8.12491 8.32458 8.84919 9.50675 9.69432 10.94794 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.035048 B = 0.014937 C = 0.011713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.713229 B = 1874.053719 C = 2390.029876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.108 4.108 3 C -0.063 4.063 4 H 0.058 0.942 5 C -0.110 4.110 6 C -0.114 4.114 7 C -0.115 4.115 8 C -0.138 4.138 9 C 0.259 3.741 10 O -0.589 6.589 11 C -0.528 4.528 12 H 0.059 0.941 13 C 0.067 3.933 14 N -0.900 5.900 15 Si 0.894 3.106 16 H -0.280 1.280 17 H -0.287 1.287 18 H -0.275 1.275 19 H 0.045 0.955 20 H 0.047 0.953 21 H 0.041 0.959 22 H 0.059 0.941 23 H 0.067 0.933 24 H 0.063 0.937 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.049 0.951 28 H 0.058 0.942 29 H 0.036 0.964 30 H 0.037 0.963 31 H 0.091 0.909 32 H 0.376 0.624 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.682 1.742 -2.204 6.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.145 4.145 3 C -0.081 4.081 4 H 0.076 0.924 5 C -0.147 4.147 6 C -0.151 4.151 7 C -0.153 4.153 8 C -0.176 4.176 9 C 0.220 3.780 10 O -0.397 6.397 11 C -0.567 4.567 12 H 0.077 0.923 13 C -0.133 4.133 14 N -0.541 5.541 15 Si 0.722 3.278 16 H -0.206 1.206 17 H -0.213 1.213 18 H -0.200 1.200 19 H 0.064 0.936 20 H 0.066 0.934 21 H 0.060 0.940 22 H 0.078 0.922 23 H 0.086 0.914 24 H 0.081 0.919 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.110 0.890 32 H 0.226 0.774 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.127 1.693 -2.372 6.785 hybrid contribution 0.961 -0.280 1.142 1.519 sum -5.166 1.414 -1.230 5.495 Atomic orbital electron populations 1.21898 0.98185 1.00121 1.00774 1.21413 0.92687 0.97704 1.02696 1.21048 0.96756 0.94757 0.95567 0.92365 1.21564 0.98225 0.95428 0.99480 1.21501 0.97147 0.96931 0.99568 1.21520 0.94571 0.98586 1.00595 1.22187 1.04097 0.97752 0.93579 1.18519 0.87358 0.87489 0.84675 1.86087 1.26067 1.78596 1.48952 1.21838 0.92052 1.37179 1.05602 0.92262 1.24989 0.96598 0.94803 0.96913 1.69600 1.00745 1.46458 1.37292 0.86568 0.77888 0.79694 0.83661 1.20635 1.21252 1.19953 0.93606 0.93396 0.93966 0.92192 0.91396 0.91852 0.93848 0.93861 0.93225 0.92363 0.94487 0.94368 0.89033 0.77428 0.92555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.67 37.16 0.36 -2.13 16 2 C -0.11 -2.18 5.02 -26.73 -0.13 -2.31 16 3 C -0.06 -1.34 1.51 -90.62 -0.14 -1.48 16 4 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 5 C -0.11 -2.09 4.81 -26.73 -0.13 -2.22 16 6 C -0.11 -2.08 5.92 -26.74 -0.16 -2.23 16 7 C -0.12 -2.34 5.78 -26.74 -0.15 -2.49 16 8 C -0.14 -3.26 4.69 -26.73 -0.13 -3.39 16 9 C 0.26 6.33 0.35 -91.77 -0.03 6.30 16 10 O -0.59 -15.03 11.03 -35.23 -0.39 -15.42 16 11 C -0.53 -14.11 7.45 -34.44 -0.26 -14.36 16 12 H 0.06 1.59 6.72 -52.49 -0.35 1.23 16 13 C 0.07 1.80 5.22 -17.82 -0.09 1.70 16 14 N -0.90 -24.15 9.68 55.43 0.54 -23.62 16 15 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 17 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 18 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 19 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 20 H 0.05 0.73 6.56 -51.93 -0.34 0.39 16 21 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.06 1.27 7.83 -51.93 -0.41 0.86 16 23 H 0.07 1.48 6.47 -51.93 -0.34 1.15 16 24 H 0.06 1.28 7.68 -51.93 -0.40 0.89 16 25 H 0.04 0.73 6.57 -51.93 -0.34 0.39 16 26 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.06 1.23 7.68 -51.93 -0.40 0.83 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 32 H 0.38 9.97 7.15 45.56 0.33 10.30 16 33 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 250.04 15.07 3.77 3.77 Total: -1.00 -26.43 250.04 -6.62 -33.06 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -4.66 Total: 8.93 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: -0.86 Total: -22.61 kcal Atomic # 7 Polarization: -24.15 SS G_CDS: 0.54 Total: -23.62 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -0.39 Total: -15.42 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -26.43 -6.62 -33.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879148.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.376 kcal (2) G-P(sol) polarization free energy of solvation -26.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds