Wall clock time and date at job start Mon Mar 30 2020 02:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46847 * 2 1 4 4 H 1.08992 * 109.47514 * 54.99831 * 3 2 1 5 5 C 1.53000 * 109.46886 * 294.99397 * 3 2 1 6 6 C 1.53002 * 109.46806 * 180.02562 * 5 3 2 7 7 C 1.52989 * 109.47566 * 60.00046 * 6 5 3 8 8 C 1.52997 * 109.47201 * 300.00144 * 7 6 5 9 9 C 1.52997 * 109.47232 * 59.99721 * 8 7 6 10 10 O 1.42905 * 109.47264 * 60.00091 * 9 8 7 11 11 C 1.50701 * 109.47212 * 180.02562 * 9 8 7 12 12 H 1.07999 * 119.99742 * 119.99976 * 11 9 8 13 13 C 1.37878 * 120.00001 * 299.99823 * 11 9 8 14 14 N 1.31507 * 120.00096 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 119.99524 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.46963 * 90.00517 * 15 13 11 17 17 H 1.48505 * 109.46730 * 210.00156 * 15 13 11 18 18 H 1.48499 * 109.47520 * 330.00255 * 15 13 11 19 19 H 1.08994 * 109.47037 * 300.00493 * 1 2 3 20 20 H 1.09003 * 109.46480 * 60.00398 * 1 2 3 21 21 H 1.08995 * 109.47057 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47037 * 239.99507 * 2 1 3 23 23 H 1.08995 * 109.46658 * 119.99333 * 2 1 3 24 24 H 1.09002 * 109.47398 * 300.00496 * 5 3 2 25 25 H 1.09001 * 109.47194 * 60.00677 * 5 3 2 26 26 H 1.09001 * 109.47248 * 180.02562 * 6 5 3 27 27 H 1.09002 * 109.46838 * 299.99643 * 6 5 3 28 28 H 1.09002 * 109.47371 * 59.99923 * 7 6 5 29 29 H 1.09000 * 109.47424 * 179.97438 * 7 6 5 30 30 H 1.09002 * 109.47045 * 299.99662 * 8 7 6 31 31 H 1.09001 * 109.47375 * 179.97438 * 8 7 6 32 32 H 0.96705 * 113.99788 * 60.00095 * 10 9 8 33 33 H 0.96997 * 119.99806 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 1.6353 2.1265 -1.3074 6 6 2.1458 3.5688 -1.3077 7 6 3.6705 3.5702 -1.1821 8 6 4.0753 2.8863 0.1252 9 6 3.5649 1.4439 0.1255 10 8 4.1343 0.7369 -0.9781 11 6 3.9630 0.7704 1.4135 12 1 3.2043 0.3804 2.0758 13 6 5.2958 0.6521 1.7463 14 7 6.2195 1.1275 0.9400 15 14 5.7891 -0.1821 3.3433 16 1 5.9756 -1.6359 3.1051 17 1 7.0604 0.4058 3.8366 18 1 4.7235 0.0207 4.3575 19 1 -0.3633 0.5139 0.8899 20 1 -0.3632 0.5138 -0.8901 21 1 -0.3633 -1.0276 -0.0005 22 1 1.8934 -0.5139 -0.8899 23 1 1.8933 -0.5137 0.8900 24 1 2.0700 1.5874 -2.1492 25 1 0.5490 2.1252 -1.3970 26 1 1.8571 4.0563 -2.2389 27 1 1.7114 4.1081 -0.4659 28 1 4.1050 3.0310 -2.0239 29 1 4.0342 4.5978 -1.1828 30 1 3.6409 3.4256 0.9670 31 1 5.1616 2.8869 0.2145 32 1 5.1005 0.6977 -0.9637 33 1 7.1571 1.0446 1.1744 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085879148.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:35 Heat of formation + Delta-G solvation = -100.982332 kcal Electronic energy + Delta-G solvation = -13831.809414 eV Core-core repulsion = 11662.362434 eV Total energy + Delta-G solvation = -2169.446980 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.15291 -35.87316 -34.58803 -34.02443 -30.57240 -29.66501 -26.75778 -24.50997 -22.57082 -21.29778 -20.18707 -18.80187 -16.99296 -16.33284 -15.77931 -15.30366 -15.11874 -14.79521 -14.01854 -13.85223 -13.53481 -13.42878 -13.02700 -12.83712 -12.46937 -12.37067 -12.15232 -11.98523 -11.84231 -11.68275 -11.36684 -11.19270 -11.06020 -10.51384 -10.31741 -9.75760 -8.09338 -6.26834 1.38777 1.41295 1.49709 2.41254 3.10330 4.03987 4.09271 4.20747 4.39289 4.48917 4.52526 4.63783 4.72181 4.91111 4.94326 4.99465 5.06388 5.11264 5.23652 5.28476 5.30808 5.43248 5.51045 5.61399 5.65473 5.71940 5.73739 5.97880 6.19167 6.33598 6.79458 7.43694 7.61452 8.89687 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.035048 B = 0.014937 C = 0.011713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.713229 B = 1874.053719 C = 2390.029876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.104 4.104 3 C -0.064 4.064 4 H 0.056 0.944 5 C -0.104 4.104 6 C -0.111 4.111 7 C -0.111 4.111 8 C -0.135 4.135 9 C 0.248 3.752 10 O -0.592 6.592 11 C -0.550 4.550 12 H 0.050 0.950 13 C 0.026 3.974 14 N -0.914 5.914 15 Si 0.949 3.051 16 H -0.280 1.280 17 H -0.283 1.283 18 H -0.273 1.273 19 H 0.053 0.947 20 H 0.063 0.937 21 H 0.057 0.943 22 H 0.043 0.957 23 H 0.042 0.958 24 H 0.048 0.952 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.059 0.941 28 H 0.045 0.955 29 H 0.054 0.946 30 H 0.031 0.969 31 H 0.062 0.938 32 H 0.367 0.633 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.126 2.221 -2.373 7.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.142 4.142 3 C -0.083 4.083 4 H 0.074 0.926 5 C -0.142 4.142 6 C -0.148 4.148 7 C -0.148 4.148 8 C -0.173 4.173 9 C 0.208 3.792 10 O -0.399 6.399 11 C -0.588 4.588 12 H 0.068 0.932 13 C -0.173 4.173 14 N -0.556 5.556 15 Si 0.776 3.224 16 H -0.206 1.206 17 H -0.208 1.208 18 H -0.197 1.197 19 H 0.072 0.928 20 H 0.082 0.918 21 H 0.076 0.924 22 H 0.062 0.938 23 H 0.061 0.939 24 H 0.067 0.933 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.050 0.950 31 H 0.081 0.919 32 H 0.216 0.784 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.582 2.176 -2.544 8.288 hybrid contribution 1.439 -0.440 1.202 1.926 sum -6.143 1.736 -1.342 6.523 Atomic orbital electron populations 1.21806 0.94710 1.01634 1.01897 1.21328 0.95729 0.96528 1.00617 1.21042 0.94438 0.95811 0.97010 0.92568 1.21519 0.99973 0.95497 0.97163 1.21497 0.95067 0.96684 1.01563 1.21455 0.96581 0.98893 0.97904 1.22052 1.02129 0.97785 0.95328 1.18739 0.89470 0.87488 0.83455 1.86089 1.25322 1.79019 1.49505 1.22124 0.92221 1.37764 1.06681 0.93159 1.25634 0.96693 0.95407 0.99580 1.69705 1.00804 1.46768 1.38285 0.85698 0.77544 0.78655 0.80518 1.20552 1.20808 1.19741 0.92807 0.91831 0.92388 0.93821 0.93915 0.93316 0.90893 0.90865 0.92258 0.93581 0.92724 0.95050 0.91937 0.78428 0.92550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.30 9.67 71.98 0.70 -3.61 16 2 C -0.10 -4.15 5.02 30.60 0.15 -4.00 16 3 C -0.06 -2.70 1.51 -10.79 -0.02 -2.71 16 4 H 0.06 2.35 8.14 -2.39 -0.02 2.34 16 5 C -0.10 -3.71 4.81 30.60 0.15 -3.57 16 6 C -0.11 -3.70 5.92 30.59 0.18 -3.52 16 7 C -0.11 -4.34 5.78 30.59 0.18 -4.17 16 8 C -0.13 -6.39 4.69 30.59 0.14 -6.24 16 9 C 0.25 12.20 0.35 -11.54 0.00 12.20 16 10 O -0.59 -30.79 11.03 -148.98 -1.64 -32.44 16 11 C -0.55 -29.82 7.45 25.60 0.19 -29.63 16 12 H 0.05 2.74 6.72 -2.91 -0.02 2.73 16 13 C 0.03 1.39 5.22 84.66 0.44 1.83 16 14 N -0.91 -49.93 9.68 21.45 0.21 -49.73 16 15 Si 0.95 43.26 29.54 68.60 2.03 45.28 16 16 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 17 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 18 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 19 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 20 H 0.06 1.71 6.56 -2.39 -0.02 1.70 16 21 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 22 H 0.04 1.84 7.83 -2.39 -0.02 1.82 16 23 H 0.04 1.88 6.47 -2.39 -0.02 1.86 16 24 H 0.05 1.88 7.68 -2.39 -0.02 1.86 16 25 H 0.07 2.18 6.57 -2.39 -0.02 2.17 16 26 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.05 1.90 7.68 -2.39 -0.02 1.88 16 29 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.06 3.31 6.07 -2.39 -0.01 3.30 16 32 H 0.37 20.09 7.15 -74.05 -0.53 19.56 16 33 H 0.26 13.86 8.31 -92.71 -0.77 13.09 16 Total: -1.00 -56.28 250.04 3.25 -53.03 By element: Atomic # 1 Polarization: 26.71 SS G_CDS: 0.55 Total: 27.26 kcal Atomic # 6 Polarization: -45.52 SS G_CDS: 2.11 Total: -43.41 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: 0.21 Total: -49.73 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: -1.64 Total: -32.44 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Total: -56.28 3.25 -53.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879148.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.950 kcal (2) G-P(sol) polarization free energy of solvation -56.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds