Wall clock time and date at job start Mon Mar 30 2020 02:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47163 * 2 1 4 4 H 1.09002 * 109.47067 * 305.00423 * 3 2 1 5 5 C 1.52997 * 109.47092 * 65.00276 * 3 2 1 6 6 C 1.52999 * 109.47592 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.46991 * 300.00342 * 6 5 3 8 8 C 1.53008 * 109.47280 * 59.99765 * 7 6 5 9 9 C 1.52997 * 109.47143 * 185.00406 * 3 2 1 10 10 O 1.42895 * 109.47503 * 59.99922 * 9 3 2 11 11 C 1.50706 * 109.47238 * 299.99842 * 9 3 2 12 12 H 1.07999 * 119.99515 * 0.02562 * 11 9 3 13 13 C 1.37870 * 120.00176 * 180.02562 * 11 9 3 14 14 N 1.31520 * 119.99883 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 120.00043 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47293 * 89.99746 * 15 13 11 17 17 H 1.48504 * 109.47104 * 209.99992 * 15 13 11 18 18 H 1.48495 * 109.47249 * 329.99739 * 15 13 11 19 19 H 1.09009 * 109.46970 * 299.99796 * 1 2 3 20 20 H 1.09000 * 109.47439 * 59.99822 * 1 2 3 21 21 H 1.09001 * 109.47298 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47330 * 240.00520 * 2 1 3 23 23 H 1.09000 * 109.47439 * 120.00178 * 2 1 3 24 24 H 1.09002 * 109.47045 * 60.00133 * 5 3 2 25 25 H 1.09000 * 109.47140 * 300.00226 * 5 3 2 26 26 H 1.08993 * 109.47839 * 179.97438 * 6 5 3 27 27 H 1.09002 * 109.46719 * 60.00054 * 6 5 3 28 28 H 1.09002 * 109.47153 * 299.99445 * 7 6 5 29 29 H 1.09001 * 109.47289 * 179.97438 * 7 6 5 30 30 H 1.09004 * 109.46943 * 180.02562 * 8 7 6 31 31 H 1.08992 * 109.47290 * 59.99755 * 8 7 6 32 32 H 0.96698 * 114.00355 * 179.97438 * 10 9 3 33 33 H 0.97004 * 119.99507 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6353 2.1265 1.3074 6 6 2.1458 3.5688 1.3077 7 6 3.6706 3.5701 1.1822 8 6 4.0753 2.8861 -0.1253 9 6 3.5648 1.4443 -0.1258 10 8 3.9428 0.8055 -1.3468 11 6 4.1658 0.6991 1.0380 12 1 3.5242 0.2670 1.7918 13 6 5.5345 0.5689 1.1405 14 7 6.3157 1.0955 0.2229 15 14 6.2794 -0.3555 2.5828 16 1 6.4184 -1.7917 2.2317 17 1 7.6168 0.2094 2.8952 18 1 5.3953 -0.2190 3.7680 19 1 -0.3633 0.5138 0.8901 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 1.8933 -0.5138 -0.8901 23 1 1.8933 -0.5139 0.8900 24 1 2.0700 1.5875 2.1491 25 1 0.5490 2.1252 1.3970 26 1 1.8571 4.0563 2.2389 27 1 1.7114 4.1081 0.4659 28 1 4.1049 3.0308 2.0240 29 1 4.0343 4.5976 1.1820 30 1 5.1617 2.8867 -0.2144 31 1 3.6410 3.4254 -0.9670 32 1 4.8980 0.7708 -1.4933 33 1 7.2787 1.0036 0.2949 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085879150.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:37 Heat of formation + Delta-G solvation = -99.694669 kcal Electronic energy + Delta-G solvation = -13921.783311 eV Core-core repulsion = 11752.392168 eV Total energy + Delta-G solvation = -2169.391143 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.19995 -36.05691 -34.68901 -33.89349 -30.21656 -29.62708 -26.88511 -24.49094 -22.61547 -21.30240 -20.55184 -18.22677 -17.03595 -16.64731 -15.66899 -15.49228 -14.83701 -14.66101 -14.11946 -13.93741 -13.60387 -13.19158 -13.07086 -12.69221 -12.60316 -12.40705 -12.19069 -11.99177 -11.85708 -11.59911 -11.38869 -11.18407 -10.79677 -10.54340 -10.34259 -9.80038 -8.06100 -6.19550 1.40064 1.43380 1.50744 2.43684 3.15172 3.96388 4.13134 4.16566 4.44016 4.46130 4.58925 4.72460 4.77041 4.93645 4.95616 5.02956 5.06583 5.16345 5.20789 5.28170 5.32816 5.42270 5.60443 5.63169 5.70564 5.73523 5.76024 5.90855 6.18002 6.38560 6.84667 7.47764 7.58599 8.94836 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.031601 B = 0.015638 C = 0.014059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.845862 B = 1790.077395 C = 1991.096783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.103 4.103 3 C -0.063 4.063 4 H 0.042 0.958 5 C -0.099 4.099 6 C -0.110 4.110 7 C -0.098 4.098 8 C -0.134 4.134 9 C 0.239 3.761 10 O -0.606 6.606 11 C -0.521 4.521 12 H 0.056 0.944 13 C 0.024 3.976 14 N -0.919 5.919 15 Si 0.944 3.056 16 H -0.283 1.283 17 H -0.286 1.286 18 H -0.270 1.270 19 H 0.064 0.936 20 H 0.052 0.948 21 H 0.057 0.943 22 H 0.037 0.963 23 H 0.048 0.952 24 H 0.053 0.947 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.058 0.942 28 H 0.048 0.952 29 H 0.049 0.951 30 H 0.062 0.938 31 H 0.020 0.980 32 H 0.371 0.629 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.378 2.188 2.410 8.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.141 4.141 3 C -0.082 4.082 4 H 0.061 0.939 5 C -0.137 4.137 6 C -0.147 4.147 7 C -0.136 4.136 8 C -0.172 4.172 9 C 0.200 3.800 10 O -0.414 6.414 11 C -0.559 4.559 12 H 0.074 0.926 13 C -0.174 4.174 14 N -0.561 5.561 15 Si 0.771 3.229 16 H -0.209 1.209 17 H -0.212 1.212 18 H -0.194 1.194 19 H 0.083 0.917 20 H 0.071 0.929 21 H 0.076 0.924 22 H 0.056 0.944 23 H 0.066 0.934 24 H 0.072 0.928 25 H 0.094 0.906 26 H 0.091 0.909 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.039 0.961 32 H 0.220 0.780 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.856 2.147 2.319 8.468 hybrid contribution 1.668 -0.493 0.516 1.815 sum -6.188 1.654 2.835 7.004 Atomic orbital electron populations 1.21804 0.94647 1.01660 1.01914 1.21312 0.95771 0.96454 1.00568 1.20974 0.94376 0.95806 0.97019 0.93903 1.21491 0.99884 0.95529 0.96755 1.21489 0.95082 0.96679 1.01478 1.21281 0.96348 0.98143 0.97835 1.22032 1.01987 0.97589 0.95626 1.18912 0.90861 0.88332 0.81876 1.86087 1.28762 1.82658 1.43928 1.21879 0.91615 1.33669 1.08739 0.92611 1.25592 0.97750 0.95903 0.98176 1.69709 1.04383 1.46192 1.35797 0.85772 0.77749 0.78763 0.80608 1.20875 1.21199 1.19422 0.91735 0.92877 0.92352 0.94412 0.93352 0.92786 0.90626 0.90888 0.92344 0.93305 0.93261 0.91920 0.96088 0.78034 0.92759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.26 9.67 71.98 0.70 -3.57 16 2 C -0.10 -4.09 4.97 30.59 0.15 -3.94 16 3 C -0.06 -2.64 1.69 -10.79 -0.02 -2.66 16 4 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 5 C -0.10 -3.57 4.73 30.59 0.14 -3.43 16 6 C -0.11 -3.75 5.92 30.59 0.18 -3.57 16 7 C -0.10 -4.03 5.70 30.60 0.17 -3.85 16 8 C -0.13 -6.38 4.86 30.58 0.15 -6.23 16 9 C 0.24 11.79 0.53 -11.55 -0.01 11.78 16 10 O -0.61 -32.61 12.20 -148.98 -1.82 -34.42 16 11 C -0.52 -27.19 5.62 25.60 0.14 -27.04 16 12 H 0.06 2.91 5.69 -2.91 -0.02 2.90 16 13 C 0.02 1.26 5.22 84.65 0.44 1.71 16 14 N -0.92 -49.90 9.68 21.45 0.21 -49.70 16 15 Si 0.94 42.70 29.54 68.60 2.03 44.73 16 16 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 17 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 18 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 19 H 0.06 1.73 6.57 -2.38 -0.02 1.71 16 20 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 21 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 22 H 0.04 1.65 7.54 -2.38 -0.02 1.63 16 23 H 0.05 2.03 6.79 -2.39 -0.02 2.01 16 24 H 0.05 2.12 6.62 -2.39 -0.02 2.10 16 25 H 0.08 2.26 6.56 -2.39 -0.02 2.24 16 26 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.05 2.20 7.22 -2.39 -0.02 2.18 16 29 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.06 3.33 6.06 -2.39 -0.01 3.31 16 31 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.37 20.60 7.15 -74.06 -0.53 20.07 16 33 H 0.26 13.77 8.31 -92.71 -0.77 13.00 16 Total: -1.00 -56.00 247.13 3.03 -52.97 By element: Atomic # 1 Polarization: 26.67 SS G_CDS: 0.56 Total: 27.22 kcal Atomic # 6 Polarization: -42.86 SS G_CDS: 2.06 Total: -40.80 kcal Atomic # 7 Polarization: -49.90 SS G_CDS: 0.21 Total: -49.70 kcal Atomic # 8 Polarization: -32.61 SS G_CDS: -1.82 Total: -34.42 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -56.00 3.03 -52.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879150.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.722 kcal (2) G-P(sol) polarization free energy of solvation -56.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds