Wall clock time and date at job start Mon Mar 30 2020 01:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47084 * 2 1 4 4 C 1.52998 * 109.46981 * 119.99949 * 2 1 3 5 5 C 1.53004 * 109.47377 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.46670 * 299.99655 * 5 4 2 7 7 O 1.42894 * 109.47212 * 299.99860 * 6 5 4 8 8 C 1.50700 * 109.46769 * 179.97438 * 6 5 4 9 9 H 1.07997 * 120.00060 * 266.97570 * 8 6 5 10 10 C 1.37875 * 119.99773 * 86.98297 * 8 6 5 11 11 N 1.31514 * 120.00430 * 174.17834 * 10 8 6 12 12 Si 1.86808 * 119.99986 * 354.17102 * 10 8 6 13 13 H 1.48500 * 109.46744 * 86.55882 * 12 10 8 14 14 H 1.48504 * 109.47114 * 206.55956 * 12 10 8 15 15 H 1.48499 * 109.47214 * 326.56174 * 12 10 8 16 16 C 1.52998 * 109.46939 * 60.00077 * 6 5 4 17 17 C 1.53000 * 109.47626 * 299.99744 * 16 6 5 18 18 H 1.08994 * 109.47280 * 300.00368 * 1 2 3 19 19 H 1.09000 * 109.46662 * 60.00121 * 1 2 3 20 20 H 1.08998 * 109.46882 * 179.97438 * 1 2 3 21 21 H 1.09007 * 109.46918 * 179.97438 * 3 2 1 22 22 H 1.09000 * 109.47272 * 299.99505 * 3 2 1 23 23 H 1.08994 * 109.47398 * 60.00238 * 3 2 1 24 24 H 1.08996 * 109.47335 * 59.99947 * 4 2 1 25 25 H 1.09004 * 109.46882 * 299.99977 * 4 2 1 26 26 H 1.08996 * 109.47191 * 59.99541 * 5 4 2 27 27 H 1.09000 * 109.47058 * 179.97438 * 5 4 2 28 28 H 0.96708 * 113.99745 * 175.06021 * 7 6 5 29 29 H 0.96997 * 120.00387 * 179.97438 * 11 10 8 30 30 H 1.09005 * 109.47433 * 59.99967 * 16 6 5 31 31 H 1.09003 * 109.47173 * 179.97438 * 16 6 5 32 32 H 1.08995 * 109.47615 * 180.02562 * 17 16 6 33 33 H 1.09005 * 109.46897 * 300.00551 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5700 -0.7207 1.2497 6 6 4.0805 -1.4417 0.0004 7 8 3.6046 -2.7891 0.0002 8 6 5.5875 -1.4407 0.0005 9 1 6.1269 -0.6562 -0.5092 10 6 6.2774 -2.4414 0.6512 11 7 7.5875 -2.5061 0.5561 12 14 5.3514 -3.7055 1.6683 13 1 4.9111 -4.8200 0.7912 14 1 6.2429 -4.2347 2.7315 15 1 4.1640 -3.0665 2.2905 16 6 3.5705 -0.7205 -1.2488 17 6 2.0405 -0.7209 -1.2492 18 1 -0.3633 0.5139 0.8899 19 1 -0.3632 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 3.1300 1.4425 0.0005 22 1 1.6767 1.9563 -0.8900 23 1 1.6767 1.9563 0.8899 24 1 1.6766 -1.7489 1.2493 25 1 1.6766 -0.2073 2.1392 26 1 3.9330 0.3070 1.2498 27 1 3.9332 -1.2342 2.1399 28 1 3.8266 -3.2845 -0.8001 29 1 8.0730 -3.2099 1.0142 30 1 3.9335 0.3073 -1.2487 31 1 3.9345 -1.2339 -2.1388 32 1 1.6772 -0.2075 -2.1394 33 1 1.6775 -1.7487 -1.2494 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085879153.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:20 Heat of formation + Delta-G solvation = -78.096670 kcal Electronic energy + Delta-G solvation = -13889.590546 eV Core-core repulsion = 11721.135963 eV Total energy + Delta-G solvation = -2168.454583 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.20722 -35.63247 -32.20377 -30.93143 -30.11962 -26.96192 -26.77620 -23.40122 -22.03592 -19.87184 -17.90952 -16.89976 -15.21972 -14.92252 -14.48179 -14.01428 -13.64975 -13.07339 -12.81227 -12.56551 -12.07660 -11.73861 -11.44584 -11.44055 -11.35577 -10.99560 -10.74122 -10.54631 -10.33390 -9.99600 -9.74310 -9.57718 -9.47505 -8.89538 -8.39198 -8.12385 -6.04815 -4.14598 3.55718 3.61969 3.81142 4.63365 5.14240 5.19829 5.25754 5.29777 5.57582 5.79079 5.86895 5.93659 6.07042 6.10897 6.13531 6.22288 6.26202 6.35296 6.40368 6.45512 6.60833 6.64629 6.72208 6.84002 6.96382 7.15220 7.23554 7.52624 7.71556 8.30318 8.81563 8.99305 9.59443 11.04936 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.053350 B = 0.013210 C = 0.012395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.707244 B = 2119.172979 C = 2258.481020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.063 4.063 3 C -0.144 4.144 4 C -0.107 4.107 5 C -0.102 4.102 6 C 0.225 3.775 7 O -0.565 6.565 8 C -0.555 4.555 9 H 0.073 0.927 10 C 0.069 3.931 11 N -0.898 5.898 12 Si 0.950 3.050 13 H -0.296 1.296 14 H -0.332 1.332 15 H -0.265 1.265 16 C -0.131 4.131 17 C -0.104 4.104 18 H 0.048 0.952 19 H 0.047 0.953 20 H 0.051 0.949 21 H 0.067 0.933 22 H 0.045 0.955 23 H 0.046 0.954 24 H 0.062 0.938 25 H 0.044 0.956 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.364 0.636 29 H 0.263 0.737 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.045 0.955 33 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.869 3.775 -1.380 12.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.063 4.063 3 C -0.201 4.201 4 C -0.144 4.144 5 C -0.139 4.139 6 C 0.186 3.814 7 O -0.373 6.373 8 C -0.592 4.592 9 H 0.091 0.909 10 C -0.134 4.134 11 N -0.535 5.535 12 Si 0.787 3.213 13 H -0.224 1.224 14 H -0.264 1.264 15 H -0.192 1.192 16 C -0.169 4.169 17 C -0.141 4.141 18 H 0.067 0.933 19 H 0.066 0.934 20 H 0.070 0.930 21 H 0.086 0.914 22 H 0.064 0.936 23 H 0.065 0.935 24 H 0.081 0.919 25 H 0.062 0.938 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.211 0.789 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.936 3.901 -0.766 12.581 hybrid contribution -0.026 -0.788 -0.066 0.791 sum -11.962 3.113 -0.833 12.388 Atomic orbital electron populations 1.21857 0.95769 1.01166 1.00744 1.20493 0.94042 0.95361 0.96405 1.21968 1.02302 0.95458 1.00375 1.21609 0.97577 0.99857 0.95382 1.21807 0.92782 1.00040 0.99294 1.19163 0.92776 0.78614 0.90864 1.86101 1.80563 1.26873 1.43740 1.21450 0.89460 1.12376 1.35961 0.90877 1.25143 0.94846 0.98033 0.95408 1.69992 1.07263 1.33610 1.42597 0.85682 0.77436 0.79995 0.78221 1.22365 1.26435 1.19155 1.22160 0.93560 1.01359 0.99801 1.21550 0.96988 0.99894 0.95707 0.93286 0.93355 0.93033 0.91376 0.93577 0.93483 0.91938 0.93762 0.91738 0.92065 0.78900 0.92784 0.91987 0.92733 0.93603 0.92075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 8.48 37.16 0.31 -1.52 16 2 C -0.06 -0.99 0.77 -154.51 -0.12 -1.11 16 3 C -0.14 -2.12 7.78 37.16 0.29 -1.84 16 4 C -0.11 -1.92 4.58 -26.73 -0.12 -2.04 16 5 C -0.10 -2.17 4.37 -26.73 -0.12 -2.28 16 6 C 0.22 5.08 0.54 -91.77 -0.05 5.03 16 7 O -0.57 -12.61 7.03 -35.23 -0.25 -12.86 16 8 C -0.56 -15.30 8.76 -34.44 -0.30 -15.61 16 9 H 0.07 2.20 8.06 -52.49 -0.42 1.78 16 10 C 0.07 1.99 5.46 -17.82 -0.10 1.90 16 11 N -0.90 -27.69 13.96 55.43 0.77 -26.92 16 12 Si 0.95 24.45 24.31 -169.99 -4.13 20.31 16 13 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 14 H -0.33 -8.81 7.11 56.52 0.40 -8.41 16 15 H -0.27 -6.71 5.32 56.52 0.30 -6.41 16 16 C -0.13 -2.54 4.58 -26.73 -0.12 -2.66 16 17 C -0.10 -1.71 4.59 -26.73 -0.12 -1.83 16 18 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 19 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 20 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 21 H 0.07 1.11 4.81 -51.93 -0.25 0.86 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.06 1.19 7.68 -51.93 -0.40 0.79 16 25 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.06 1.33 6.43 -51.93 -0.33 1.00 16 27 H 0.06 1.43 5.75 -51.93 -0.30 1.13 16 28 H 0.36 7.36 8.90 45.56 0.41 7.76 16 29 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 30 H 0.06 1.20 6.43 -51.93 -0.33 0.87 16 31 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 1.03 7.68 -51.93 -0.40 0.63 16 LS Contribution 243.92 15.07 3.68 3.68 Total: -1.00 -30.23 243.92 -5.03 -35.26 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -4.65 Total: 2.48 kcal Atomic # 6 Polarization: -21.50 SS G_CDS: -0.45 Total: -21.95 kcal Atomic # 7 Polarization: -27.69 SS G_CDS: 0.77 Total: -26.92 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: -0.25 Total: -12.86 kcal Atomic # 14 Polarization: 24.45 SS G_CDS: -4.13 Total: 20.31 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -30.23 -5.03 -35.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879153.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.838 kcal (2) G-P(sol) polarization free energy of solvation -30.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds