Wall clock time and date at job start Mon Mar 30 2020 01:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47084 * 2 1 4 4 C 1.52998 * 109.46981 * 119.99949 * 2 1 3 5 5 C 1.53004 * 109.47377 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.46670 * 299.99655 * 5 4 2 7 7 O 1.42894 * 109.47212 * 299.99860 * 6 5 4 8 8 C 1.50700 * 109.46769 * 179.97438 * 6 5 4 9 9 H 1.07997 * 120.00060 * 266.97570 * 8 6 5 10 10 C 1.37875 * 119.99773 * 86.98297 * 8 6 5 11 11 N 1.31514 * 120.00430 * 174.17834 * 10 8 6 12 12 Si 1.86808 * 119.99986 * 354.17102 * 10 8 6 13 13 H 1.48500 * 109.46744 * 86.55882 * 12 10 8 14 14 H 1.48504 * 109.47114 * 206.55956 * 12 10 8 15 15 H 1.48499 * 109.47214 * 326.56174 * 12 10 8 16 16 C 1.52998 * 109.46939 * 60.00077 * 6 5 4 17 17 C 1.53000 * 109.47626 * 299.99744 * 16 6 5 18 18 H 1.08994 * 109.47280 * 300.00368 * 1 2 3 19 19 H 1.09000 * 109.46662 * 60.00121 * 1 2 3 20 20 H 1.08998 * 109.46882 * 179.97438 * 1 2 3 21 21 H 1.09007 * 109.46918 * 179.97438 * 3 2 1 22 22 H 1.09000 * 109.47272 * 299.99505 * 3 2 1 23 23 H 1.08994 * 109.47398 * 60.00238 * 3 2 1 24 24 H 1.08996 * 109.47335 * 59.99947 * 4 2 1 25 25 H 1.09004 * 109.46882 * 299.99977 * 4 2 1 26 26 H 1.08996 * 109.47191 * 59.99541 * 5 4 2 27 27 H 1.09000 * 109.47058 * 179.97438 * 5 4 2 28 28 H 0.96708 * 113.99745 * 175.06021 * 7 6 5 29 29 H 0.96997 * 120.00387 * 179.97438 * 11 10 8 30 30 H 1.09005 * 109.47433 * 59.99967 * 16 6 5 31 31 H 1.09003 * 109.47173 * 179.97438 * 16 6 5 32 32 H 1.08995 * 109.47615 * 180.02562 * 17 16 6 33 33 H 1.09005 * 109.46897 * 300.00551 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5700 -0.7207 1.2497 6 6 4.0805 -1.4417 0.0004 7 8 3.6046 -2.7891 0.0002 8 6 5.5875 -1.4407 0.0005 9 1 6.1269 -0.6562 -0.5092 10 6 6.2774 -2.4414 0.6512 11 7 7.5875 -2.5061 0.5561 12 14 5.3514 -3.7055 1.6683 13 1 4.9111 -4.8200 0.7912 14 1 6.2429 -4.2347 2.7315 15 1 4.1640 -3.0665 2.2905 16 6 3.5705 -0.7205 -1.2488 17 6 2.0405 -0.7209 -1.2492 18 1 -0.3633 0.5139 0.8899 19 1 -0.3632 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 3.1300 1.4425 0.0005 22 1 1.6767 1.9563 -0.8900 23 1 1.6767 1.9563 0.8899 24 1 1.6766 -1.7489 1.2493 25 1 1.6766 -0.2073 2.1392 26 1 3.9330 0.3070 1.2498 27 1 3.9332 -1.2342 2.1399 28 1 3.8266 -3.2845 -0.8001 29 1 8.0730 -3.2099 1.0142 30 1 3.9335 0.3073 -1.2487 31 1 3.9345 -1.2339 -2.1388 32 1 1.6772 -0.2075 -2.1394 33 1 1.6775 -1.7487 -1.2494 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085879153.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:20 Heat of formation + Delta-G solvation = -98.842172 kcal Electronic energy + Delta-G solvation = -13890.490139 eV Core-core repulsion = 11721.135963 eV Total energy + Delta-G solvation = -2169.354176 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.73217 -37.24775 -34.38750 -32.55594 -31.62508 -28.54542 -28.06948 -25.13461 -23.55862 -21.53347 -19.53394 -18.78867 -17.06724 -16.77884 -16.01639 -15.37949 -15.10620 -14.70791 -14.46991 -14.30261 -13.72139 -13.42268 -12.93344 -12.83451 -12.64532 -12.42973 -12.41052 -12.15705 -12.07752 -11.60767 -11.42614 -11.07416 -11.01467 -10.88469 -10.37232 -9.97996 -8.31550 -6.42540 1.47471 1.51706 1.74018 2.47277 3.04183 3.69699 3.92857 4.00591 4.09833 4.41786 4.54817 4.63331 4.72546 4.79311 4.81084 4.94434 4.95830 5.00932 5.12352 5.19120 5.21678 5.30645 5.36553 5.45637 5.52089 5.58457 5.71939 5.75985 5.85561 6.11775 6.64273 7.06664 7.38015 8.82273 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.053350 B = 0.013210 C = 0.012395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.707244 B = 2119.172979 C = 2258.481020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.063 4.063 3 C -0.143 4.143 4 C -0.100 4.100 5 C -0.103 4.103 6 C 0.224 3.776 7 O -0.565 6.565 8 C -0.552 4.552 9 H 0.034 0.966 10 C 0.017 3.983 11 N -0.946 5.946 12 Si 1.010 2.990 13 H -0.284 1.284 14 H -0.344 1.344 15 H -0.257 1.257 16 C -0.126 4.126 17 C -0.097 4.097 18 H 0.059 0.941 19 H 0.064 0.936 20 H 0.052 0.948 21 H 0.044 0.956 22 H 0.063 0.937 23 H 0.059 0.941 24 H 0.053 0.947 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.036 0.964 28 H 0.373 0.627 29 H 0.263 0.737 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.069 0.931 33 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.802 4.061 -1.545 15.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.063 4.063 3 C -0.200 4.200 4 C -0.138 4.138 5 C -0.140 4.140 6 C 0.185 3.815 7 O -0.374 6.374 8 C -0.590 4.590 9 H 0.053 0.947 10 C -0.181 4.181 11 N -0.586 5.586 12 Si 0.844 3.156 13 H -0.211 1.211 14 H -0.278 1.278 15 H -0.183 1.183 16 C -0.164 4.164 17 C -0.134 4.134 18 H 0.078 0.922 19 H 0.083 0.917 20 H 0.071 0.929 21 H 0.063 0.937 22 H 0.082 0.918 23 H 0.078 0.922 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.055 0.945 28 H 0.222 0.778 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.893 4.194 -0.951 15.502 hybrid contribution 0.950 -0.804 -0.063 1.246 sum -13.943 3.390 -1.014 14.385 Atomic orbital electron populations 1.21790 0.93228 1.01746 1.02193 1.20516 0.96017 0.95276 0.94507 1.21946 1.00816 0.95257 1.01967 1.21550 0.94476 1.00079 0.97674 1.21728 0.95755 0.99365 0.97198 1.19118 0.89635 0.79429 0.93325 1.86047 1.80020 1.26746 1.44566 1.21842 0.92509 1.10578 1.34061 0.94729 1.25912 0.95319 1.00235 0.96639 1.70116 1.08950 1.34975 1.44531 0.84701 0.76099 0.78058 0.76695 1.21069 1.27801 1.18302 1.22032 0.96226 1.00441 0.97667 1.21511 0.94070 1.00499 0.97369 0.92155 0.91692 0.92926 0.93664 0.91787 0.92198 0.92797 0.91981 0.91769 0.94539 0.77836 0.92830 0.92396 0.93215 0.91212 0.92094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.89 8.48 71.98 0.61 -2.28 16 2 C -0.06 -1.75 0.77 -52.18 -0.04 -1.79 16 3 C -0.14 -3.75 7.78 71.98 0.56 -3.19 16 4 C -0.10 -3.32 4.58 30.59 0.14 -3.18 16 5 C -0.10 -4.27 4.37 30.60 0.13 -4.14 16 6 C 0.22 9.98 0.54 -11.54 -0.01 9.98 16 7 O -0.57 -24.25 7.03 -148.98 -1.05 -25.29 16 8 C -0.55 -31.09 8.76 25.60 0.22 -30.87 16 9 H 0.03 2.16 8.06 -2.91 -0.02 2.14 16 10 C 0.02 1.00 5.46 84.65 0.46 1.46 16 11 N -0.95 -60.12 13.96 21.45 0.30 -59.82 16 12 Si 1.01 50.78 24.31 68.60 1.67 52.45 16 13 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 14 H -0.34 -17.94 7.11 99.48 0.71 -17.24 16 15 H -0.26 -12.50 5.32 99.48 0.53 -11.97 16 16 C -0.13 -4.71 4.58 30.59 0.14 -4.57 16 17 C -0.10 -2.88 4.59 30.59 0.14 -2.74 16 18 H 0.06 1.19 8.14 -2.39 -0.02 1.18 16 19 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 20 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 21 H 0.04 1.39 4.81 -2.38 -0.01 1.38 16 22 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 23 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.05 1.89 7.68 -2.39 -0.02 1.87 16 25 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.06 2.63 6.43 -2.39 -0.02 2.62 16 27 H 0.04 1.67 5.75 -2.39 -0.01 1.65 16 28 H 0.37 14.44 8.90 -74.05 -0.66 13.78 16 29 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 30 H 0.06 2.21 6.43 -2.38 -0.02 2.19 16 31 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.06 1.83 7.68 -2.38 -0.02 1.81 16 Total: -1.00 -65.31 243.92 3.53 -61.79 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: 0.24 Total: 12.20 kcal Atomic # 6 Polarization: -43.68 SS G_CDS: 2.36 Total: -41.32 kcal Atomic # 7 Polarization: -60.12 SS G_CDS: 0.30 Total: -59.82 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -1.05 Total: -25.29 kcal Atomic # 14 Polarization: 50.78 SS G_CDS: 1.67 Total: 52.45 kcal Total: -65.31 3.53 -61.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879153.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.056 kcal (2) G-P(sol) polarization free energy of solvation -65.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds