Wall clock time and date at job start Mon Mar 30 2020 01:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47324 * 2 1 4 4 C 1.52997 * 109.47036 * 239.99744 * 2 1 3 5 5 C 1.52995 * 109.47185 * 300.00144 * 4 2 1 6 6 C 1.52992 * 109.47243 * 299.99602 * 5 4 2 7 7 C 1.53007 * 109.46982 * 60.00335 * 6 5 4 8 8 O 1.42903 * 109.46915 * 59.99780 * 7 6 5 9 9 C 1.50696 * 109.47093 * 179.97438 * 7 6 5 10 10 H 1.08001 * 119.99672 * 120.00176 * 9 7 6 11 11 C 1.37880 * 120.00463 * 299.99897 * 9 7 6 12 12 N 1.31518 * 119.99633 * 0.02562 * 11 9 7 13 13 Si 1.86800 * 120.00311 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.46871 * 60.00217 * 13 11 9 15 15 H 1.48498 * 109.47070 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.47037 * 300.00403 * 13 11 9 17 17 C 1.52995 * 109.46858 * 299.99900 * 7 6 5 18 18 H 1.09006 * 109.47396 * 288.82304 * 1 2 3 19 19 H 1.09001 * 109.46992 * 48.81463 * 1 2 3 20 20 H 1.09002 * 109.47223 * 168.82094 * 1 2 3 21 21 H 1.08996 * 109.47281 * 179.97438 * 3 2 1 22 22 H 1.08995 * 109.47058 * 300.00407 * 3 2 1 23 23 H 1.08998 * 109.46785 * 59.99961 * 3 2 1 24 24 H 1.09005 * 109.47050 * 60.00340 * 4 2 1 25 25 H 1.09004 * 109.47083 * 180.02562 * 4 2 1 26 26 H 1.08996 * 109.47209 * 60.00331 * 5 4 2 27 27 H 1.09003 * 109.47104 * 179.97438 * 5 4 2 28 28 H 1.09006 * 109.47014 * 179.97438 * 6 5 4 29 29 H 1.08996 * 109.47614 * 300.00481 * 6 5 4 30 30 H 0.96696 * 114.00152 * 60.00094 * 8 7 6 31 31 H 0.96994 * 119.99739 * 179.97438 * 12 11 9 32 32 H 1.09004 * 109.47084 * 299.99829 * 17 7 6 33 33 H 1.09003 * 109.47104 * 180.02562 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5299 -2.1637 -1.2491 6 6 2.0399 -2.8850 0.0000 7 6 1.5299 -2.1637 1.2493 8 8 0.1009 -2.1637 1.2493 9 6 2.0318 -2.8745 2.4797 10 1 2.6527 -2.3499 3.1908 11 6 1.6982 -4.1944 2.6977 12 7 0.9424 -4.8333 1.8315 13 14 2.3209 -5.0757 4.2226 14 1 1.8264 -4.3757 5.4353 15 1 1.8258 -6.4757 4.2220 16 1 3.8059 -5.0762 4.2222 17 6 2.0399 -0.7213 1.2493 18 1 -0.3634 0.3316 0.9727 19 1 -0.3633 0.6767 -0.7734 20 1 -0.3634 -1.0082 -0.1992 21 1 3.1300 1.4425 0.0005 22 1 1.6767 1.9563 -0.8899 23 1 1.6767 1.9563 0.8900 24 1 1.6766 -0.2074 -2.1392 25 1 3.1300 -0.7217 -1.2490 26 1 0.4400 -2.1637 -1.2492 27 1 1.8929 -2.6775 -2.1394 28 1 1.6762 -3.9125 0.0002 29 1 3.1299 -2.8850 0.0000 30 1 -0.2924 -3.0471 1.2492 31 1 0.7081 -5.7620 1.9847 32 1 3.1300 -0.7213 1.2493 33 1 1.6770 -0.2075 2.1395 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085879171.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:23 Heat of formation + Delta-G solvation = -77.226998 kcal Electronic energy + Delta-G solvation = -13942.891829 eV Core-core repulsion = 11774.474958 eV Total energy + Delta-G solvation = -2168.416872 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.84511 -34.75660 -32.01594 -31.44714 -29.14175 -26.47719 -25.35198 -24.89385 -21.10461 -19.73992 -17.55554 -16.63502 -14.91956 -14.79912 -14.09662 -13.55266 -13.38009 -13.13545 -12.41413 -12.00544 -11.73698 -11.48639 -11.27269 -11.04377 -10.94314 -10.75318 -10.57432 -10.26240 -10.09566 -9.89768 -9.75907 -9.47800 -9.26196 -8.72841 -8.42142 -7.77205 -6.07614 -4.18867 3.27960 3.32584 3.35959 4.37084 5.15062 5.47042 5.55279 5.60342 5.97648 6.11040 6.19964 6.28164 6.32948 6.41587 6.46979 6.53929 6.60274 6.70986 6.79142 6.83038 6.95486 7.04963 7.13969 7.20946 7.46647 7.53859 7.70685 7.83116 8.12506 8.31504 8.83615 9.49316 9.67516 10.93738 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.053442 B = 0.012153 C = 0.011509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.806349 B = 2303.389173 C = 2432.342288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.063 4.063 3 C -0.139 4.139 4 C -0.102 4.102 5 C -0.118 4.118 6 C -0.136 4.136 7 C 0.254 3.746 8 O -0.580 6.580 9 C -0.534 4.534 10 H 0.056 0.944 11 C 0.069 3.931 12 N -0.899 5.899 13 Si 0.896 3.104 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.278 1.278 17 C -0.084 4.084 18 H 0.045 0.955 19 H 0.021 0.979 20 H 0.093 0.907 21 H 0.046 0.954 22 H 0.044 0.956 23 H 0.048 0.952 24 H 0.043 0.957 25 H 0.049 0.951 26 H 0.063 0.937 27 H 0.036 0.964 28 H 0.091 0.909 29 H 0.037 0.963 30 H 0.372 0.628 31 H 0.265 0.735 32 H 0.052 0.948 33 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.785 5.446 -4.123 6.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.063 4.063 3 C -0.196 4.196 4 C -0.139 4.139 5 C -0.156 4.156 6 C -0.174 4.174 7 C 0.215 3.785 8 O -0.389 6.389 9 C -0.572 4.572 10 H 0.074 0.926 11 C -0.132 4.132 12 N -0.540 5.540 13 Si 0.724 3.276 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.203 1.203 17 C -0.121 4.121 18 H 0.064 0.936 19 H 0.041 0.959 20 H 0.112 0.888 21 H 0.065 0.935 22 H 0.063 0.937 23 H 0.067 0.933 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.081 0.919 27 H 0.055 0.945 28 H 0.109 0.891 29 H 0.056 0.944 30 H 0.222 0.778 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.804 5.922 -4.149 7.275 hybrid contribution 0.436 -1.145 0.868 1.502 sum 1.240 4.776 -3.281 5.926 Atomic orbital electron populations 1.22053 0.94248 1.03344 0.99459 1.20509 0.96473 0.93389 0.95929 1.21899 1.00189 0.96967 1.00591 1.21539 0.99389 0.96515 0.96476 1.21606 1.01043 0.94629 0.98303 1.22165 0.98743 1.02436 0.94082 1.18511 0.79071 0.89501 0.91454 1.86240 1.21717 1.34142 1.96815 1.21796 1.31572 0.96360 1.07468 0.92623 1.24977 0.94590 0.97159 0.96453 1.69593 1.37504 1.11539 1.35348 0.86603 0.79148 0.78465 0.83432 1.20230 1.21246 1.20312 1.21545 0.98576 0.96671 0.95322 0.93607 0.95947 0.88838 0.93501 0.93697 0.93276 0.93779 0.93234 0.91861 0.94478 0.89081 0.94412 0.77838 0.92465 0.92888 0.93137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 7.12 37.16 0.26 -2.30 16 2 C -0.06 -1.18 0.77 -154.51 -0.12 -1.30 16 3 C -0.14 -2.21 8.45 37.16 0.31 -1.90 16 4 C -0.10 -1.84 4.73 -26.74 -0.13 -1.97 16 5 C -0.12 -2.36 5.59 -26.74 -0.15 -2.51 16 6 C -0.14 -3.19 4.69 -26.73 -0.13 -3.31 16 7 C 0.25 6.23 0.66 -91.77 -0.06 6.17 16 8 O -0.58 -14.48 8.75 -35.23 -0.31 -14.78 16 9 C -0.53 -14.50 8.25 -34.44 -0.28 -14.79 16 10 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 11 C 0.07 1.85 5.22 -17.82 -0.09 1.75 16 12 N -0.90 -24.09 9.68 55.43 0.54 -23.55 16 13 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 14 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 15 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 C -0.08 -1.83 3.81 -26.73 -0.10 -1.93 16 18 H 0.04 0.90 8.09 -51.93 -0.42 0.48 16 19 H 0.02 0.37 8.10 -51.93 -0.42 -0.05 16 20 H 0.09 1.94 3.79 -51.93 -0.20 1.75 16 21 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 24 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.06 1.29 5.95 -51.93 -0.31 0.98 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.09 2.34 6.07 -51.93 -0.32 2.03 16 29 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.37 9.68 7.14 45.56 0.33 10.00 16 31 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 32 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 247.03 15.07 3.72 3.72 Total: -1.00 -26.38 247.03 -6.23 -32.62 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -4.68 Total: 8.10 kcal Atomic # 6 Polarization: -21.60 SS G_CDS: -0.48 Total: -22.08 kcal Atomic # 7 Polarization: -24.09 SS G_CDS: 0.54 Total: -23.55 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.31 Total: -14.78 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -26.38 -6.23 -32.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879171.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.610 kcal (2) G-P(sol) polarization free energy of solvation -26.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds