Wall clock time and date at job start Mon Mar 30 2020 01:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47324 * 2 1 4 4 C 1.52997 * 109.47036 * 239.99744 * 2 1 3 5 5 C 1.52995 * 109.47185 * 300.00144 * 4 2 1 6 6 C 1.52992 * 109.47243 * 299.99602 * 5 4 2 7 7 C 1.53007 * 109.46982 * 60.00335 * 6 5 4 8 8 O 1.42903 * 109.46915 * 59.99780 * 7 6 5 9 9 C 1.50696 * 109.47093 * 179.97438 * 7 6 5 10 10 H 1.08001 * 119.99672 * 120.00176 * 9 7 6 11 11 C 1.37880 * 120.00463 * 299.99897 * 9 7 6 12 12 N 1.31518 * 119.99633 * 0.02562 * 11 9 7 13 13 Si 1.86800 * 120.00311 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.46871 * 60.00217 * 13 11 9 15 15 H 1.48498 * 109.47070 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.47037 * 300.00403 * 13 11 9 17 17 C 1.52995 * 109.46858 * 299.99900 * 7 6 5 18 18 H 1.09006 * 109.47396 * 288.82304 * 1 2 3 19 19 H 1.09001 * 109.46992 * 48.81463 * 1 2 3 20 20 H 1.09002 * 109.47223 * 168.82094 * 1 2 3 21 21 H 1.08996 * 109.47281 * 179.97438 * 3 2 1 22 22 H 1.08995 * 109.47058 * 300.00407 * 3 2 1 23 23 H 1.08998 * 109.46785 * 59.99961 * 3 2 1 24 24 H 1.09005 * 109.47050 * 60.00340 * 4 2 1 25 25 H 1.09004 * 109.47083 * 180.02562 * 4 2 1 26 26 H 1.08996 * 109.47209 * 60.00331 * 5 4 2 27 27 H 1.09003 * 109.47104 * 179.97438 * 5 4 2 28 28 H 1.09006 * 109.47014 * 179.97438 * 6 5 4 29 29 H 1.08996 * 109.47614 * 300.00481 * 6 5 4 30 30 H 0.96696 * 114.00152 * 60.00094 * 8 7 6 31 31 H 0.96994 * 119.99739 * 179.97438 * 12 11 9 32 32 H 1.09004 * 109.47084 * 299.99829 * 17 7 6 33 33 H 1.09003 * 109.47104 * 180.02562 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5299 -2.1637 -1.2491 6 6 2.0399 -2.8850 0.0000 7 6 1.5299 -2.1637 1.2493 8 8 0.1009 -2.1637 1.2493 9 6 2.0318 -2.8745 2.4797 10 1 2.6527 -2.3499 3.1908 11 6 1.6982 -4.1944 2.6977 12 7 0.9424 -4.8333 1.8315 13 14 2.3209 -5.0757 4.2226 14 1 1.8264 -4.3757 5.4353 15 1 1.8258 -6.4757 4.2220 16 1 3.8059 -5.0762 4.2222 17 6 2.0399 -0.7213 1.2493 18 1 -0.3634 0.3316 0.9727 19 1 -0.3633 0.6767 -0.7734 20 1 -0.3634 -1.0082 -0.1992 21 1 3.1300 1.4425 0.0005 22 1 1.6767 1.9563 -0.8899 23 1 1.6767 1.9563 0.8900 24 1 1.6766 -0.2074 -2.1392 25 1 3.1300 -0.7217 -1.2490 26 1 0.4400 -2.1637 -1.2492 27 1 1.8929 -2.6775 -2.1394 28 1 1.6762 -3.9125 0.0002 29 1 3.1299 -2.8850 0.0000 30 1 -0.2924 -3.0471 1.2492 31 1 0.7081 -5.7620 1.9847 32 1 3.1300 -0.7213 1.2493 33 1 1.6770 -0.2075 2.1395 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085879171.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:23 Heat of formation + Delta-G solvation = -92.520951 kcal Electronic energy + Delta-G solvation = -13943.555025 eV Core-core repulsion = 11774.474958 eV Total energy + Delta-G solvation = -2169.080067 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.53213 -36.55265 -34.05821 -33.09448 -30.97487 -27.88714 -26.98594 -26.81293 -22.79197 -21.51358 -19.29927 -18.51465 -16.94404 -16.53326 -15.84197 -15.19579 -15.05375 -14.67458 -14.20663 -13.68932 -13.25630 -13.15122 -12.99242 -12.82307 -12.57023 -12.46632 -12.28623 -12.08523 -11.92593 -11.60632 -11.46965 -11.05227 -10.92372 -10.57241 -10.35238 -9.72025 -8.10743 -6.30461 1.39716 1.40673 1.48103 2.40200 3.08047 3.98227 4.05833 4.09022 4.38965 4.55191 4.66436 4.72040 4.84437 4.92252 4.98044 5.03273 5.04343 5.16048 5.18559 5.24778 5.36668 5.45633 5.50797 5.57054 5.64497 5.74163 5.91482 6.00284 6.19995 6.30710 6.75995 7.40742 7.61616 8.87097 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.053442 B = 0.012153 C = 0.011509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.806349 B = 2303.389173 C = 2432.342288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.063 4.063 3 C -0.134 4.134 4 C -0.098 4.098 5 C -0.114 4.114 6 C -0.129 4.129 7 C 0.244 3.756 8 O -0.579 6.579 9 C -0.565 4.565 10 H 0.044 0.956 11 C 0.030 3.970 12 N -0.910 5.910 13 Si 0.951 3.049 14 H -0.277 1.277 15 H -0.280 1.280 16 H -0.275 1.275 17 C -0.081 4.081 18 H 0.029 0.971 19 H 0.049 0.951 20 H 0.073 0.927 21 H 0.055 0.945 22 H 0.067 0.933 23 H 0.048 0.952 24 H 0.072 0.928 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.028 0.972 30 H 0.363 0.637 31 H 0.267 0.733 32 H 0.052 0.948 33 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.160 6.384 -4.985 8.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.063 4.063 3 C -0.191 4.191 4 C -0.135 4.135 5 C -0.151 4.151 6 C -0.168 4.168 7 C 0.204 3.796 8 O -0.386 6.386 9 C -0.603 4.603 10 H 0.062 0.938 11 C -0.170 4.170 12 N -0.550 5.550 13 Si 0.777 3.223 14 H -0.203 1.203 15 H -0.205 1.205 16 H -0.200 1.200 17 C -0.119 4.119 18 H 0.049 0.951 19 H 0.068 0.932 20 H 0.092 0.908 21 H 0.074 0.926 22 H 0.086 0.914 23 H 0.067 0.933 24 H 0.091 0.909 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.047 0.953 30 H 0.211 0.789 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 1.181 6.869 -5.017 8.588 hybrid contribution 0.303 -1.459 1.155 1.885 sum 1.485 5.410 -3.862 6.811 Atomic orbital electron populations 1.21960 0.94559 1.02685 0.99493 1.20520 0.96196 0.95106 0.94516 1.21832 1.00779 0.94706 1.01782 1.21522 0.99793 0.95030 0.97164 1.21538 1.00601 0.95974 0.96978 1.21994 0.97945 1.01245 0.95600 1.18681 0.78660 0.91161 0.91058 1.86274 1.22165 1.33306 1.96888 1.22132 1.32286 0.97232 1.08685 0.93809 1.25614 0.94765 0.97697 0.98887 1.69694 1.37541 1.11622 1.36181 0.85728 0.78669 0.77575 0.80281 1.20298 1.20504 1.20001 1.21501 0.98426 0.95255 0.96709 0.95139 0.93203 0.90842 0.92610 0.91392 0.93253 0.90898 0.92590 0.92504 0.92760 0.91862 0.95326 0.78880 0.92367 0.92938 0.94637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.73 7.12 71.98 0.51 -4.22 16 2 C -0.06 -2.24 0.77 -52.18 -0.04 -2.28 16 3 C -0.13 -3.80 8.45 71.98 0.61 -3.19 16 4 C -0.10 -3.24 4.73 30.59 0.14 -3.10 16 5 C -0.11 -4.36 5.59 30.59 0.17 -4.18 16 6 C -0.13 -6.09 4.69 30.59 0.14 -5.95 16 7 C 0.24 12.08 0.66 -11.54 -0.01 12.08 16 8 O -0.58 -29.36 8.75 -148.98 -1.30 -30.66 16 9 C -0.57 -31.28 8.25 25.60 0.21 -31.07 16 10 H 0.04 2.45 7.74 -2.91 -0.02 2.42 16 11 C 0.03 1.62 5.22 84.65 0.44 2.06 16 12 N -0.91 -49.35 9.68 21.45 0.21 -49.14 16 13 Si 0.95 43.28 29.54 68.60 2.03 45.31 16 14 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 15 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 16 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 17 C -0.08 -3.53 3.81 30.59 0.12 -3.41 16 18 H 0.03 1.16 8.09 -2.38 -0.02 1.14 16 19 H 0.05 1.52 8.10 -2.39 -0.02 1.50 16 20 H 0.07 2.98 3.79 -2.39 -0.01 2.97 16 21 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 22 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 23 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 25 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 26 H 0.06 2.26 5.95 -2.39 -0.01 2.24 16 27 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.06 3.31 6.07 -2.38 -0.01 3.29 16 29 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.36 19.40 7.14 -74.06 -0.53 18.87 16 31 H 0.27 13.85 8.31 -92.71 -0.77 13.08 16 32 H 0.05 2.23 8.14 -2.38 -0.02 2.21 16 33 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -55.86 247.03 3.78 -52.08 By element: Atomic # 1 Polarization: 25.13 SS G_CDS: 0.55 Total: 25.67 kcal Atomic # 6 Polarization: -45.57 SS G_CDS: 2.30 Total: -43.26 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: 0.21 Total: -49.14 kcal Atomic # 8 Polarization: -29.36 SS G_CDS: -1.30 Total: -30.66 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -55.86 3.78 -52.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879171.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.441 kcal (2) G-P(sol) polarization free energy of solvation -55.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds