Wall clock time and date at job start Mon Mar 30 2020 02:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47773 * 2 1 4 4 C 1.53004 * 109.46856 * 119.99970 * 2 1 3 5 5 C 1.53004 * 109.47051 * 59.99680 * 4 2 1 6 6 H 1.08992 * 109.47079 * 300.00295 * 5 4 2 7 7 C 1.53002 * 109.46754 * 179.97438 * 5 4 2 8 8 C 1.53002 * 109.47059 * 60.00267 * 5 4 2 9 9 C 1.53004 * 109.46971 * 299.99782 * 8 5 4 10 10 O 1.42900 * 109.47212 * 300.00016 * 9 8 5 11 11 C 1.50701 * 109.47279 * 180.02562 * 9 8 5 12 12 H 1.08003 * 119.99791 * 359.97438 * 11 9 8 13 13 C 1.37875 * 120.00260 * 180.02562 * 11 9 8 14 14 N 1.31516 * 119.99843 * 359.97438 * 13 11 9 15 15 Si 1.86792 * 120.00072 * 180.02562 * 13 11 9 16 16 H 1.48508 * 109.46879 * 269.99357 * 15 13 11 17 17 H 1.48497 * 109.47410 * 29.99408 * 15 13 11 18 18 H 1.48507 * 109.47349 * 149.99721 * 15 13 11 19 19 C 1.52996 * 109.47107 * 59.99977 * 9 8 5 20 20 H 1.09000 * 109.46816 * 311.21770 * 1 2 3 21 21 H 1.08997 * 109.46729 * 71.21493 * 1 2 3 22 22 H 1.08999 * 109.47322 * 191.21784 * 1 2 3 23 23 H 1.08992 * 109.47428 * 299.99661 * 4 2 1 24 24 H 1.09003 * 109.46864 * 179.97438 * 4 2 1 25 25 H 1.09003 * 109.47206 * 299.99643 * 7 5 4 26 26 H 1.09000 * 109.47027 * 60.00156 * 7 5 4 27 27 H 1.09002 * 109.46714 * 180.02562 * 7 5 4 28 28 H 1.09002 * 109.47278 * 179.97438 * 8 5 4 29 29 H 1.08998 * 109.47502 * 59.99453 * 8 5 4 30 30 H 0.96701 * 114.00487 * 179.97438 * 10 9 8 31 31 H 0.96999 * 120.00194 * 180.02562 * 14 13 11 32 32 H 1.08998 * 109.47189 * 60.00437 * 19 9 8 33 33 H 1.08999 * 109.46964 * 180.02562 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5299 -2.1638 1.2493 6 1 0.4399 -2.1637 1.2492 7 6 2.0404 -2.8852 2.4983 8 6 2.0399 -2.8851 0.0001 9 6 1.5299 -2.1638 -1.2492 10 8 0.1009 -2.1637 -1.2493 11 6 2.0318 -2.8746 -2.4797 12 1 2.6527 -3.7527 -2.3805 13 6 1.6991 -2.4033 -3.7319 14 7 0.9434 -1.3338 -3.8526 15 14 2.3205 -3.2848 -5.2571 16 1 3.6293 -2.7112 -5.6615 17 1 2.4840 -4.7308 -4.9611 18 1 1.3424 -3.1130 -6.3612 19 6 2.0400 -0.7214 -1.2492 20 1 -0.3633 0.6772 0.7730 21 1 -0.3633 0.3309 -0.9729 22 1 -0.3634 -1.0080 0.1999 23 1 1.6767 -0.2075 2.1392 24 1 3.1300 -0.7217 1.2491 25 1 3.1304 -2.8853 2.4978 26 1 1.6774 -2.3714 3.3885 27 1 1.6773 -3.9129 2.4981 28 1 1.6769 -3.9129 0.0003 29 1 3.1299 -2.8851 0.0001 30 1 -0.2924 -1.7217 -2.0141 31 1 0.7090 -1.0024 -4.7336 32 1 3.1300 -0.7214 -1.2492 33 1 1.6763 -0.2074 -2.1390 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085879223.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:32 Heat of formation + Delta-G solvation = -93.536606 kcal Electronic energy + Delta-G solvation = -13925.649191 eV Core-core repulsion = 11756.525082 eV Total energy + Delta-G solvation = -2169.124109 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.46403 -36.26173 -34.07656 -33.69176 -31.17329 -27.33627 -27.07564 -26.84338 -22.02434 -21.91699 -19.62854 -18.60943 -16.95546 -16.29024 -15.81743 -15.73460 -14.86787 -14.56578 -14.05063 -13.98348 -13.32910 -13.08854 -12.97767 -12.80416 -12.77316 -12.36290 -12.23607 -12.11188 -11.89483 -11.55958 -11.35916 -11.10345 -11.03106 -10.53077 -10.46406 -9.54032 -8.10885 -6.30747 1.38168 1.40678 1.49755 2.40101 3.07953 4.01017 4.08251 4.13992 4.33821 4.51481 4.61239 4.68954 4.86951 4.92887 4.98161 4.99746 5.04841 5.13028 5.23539 5.31062 5.32877 5.44462 5.51608 5.60224 5.62246 5.71362 5.89423 6.00614 6.19110 6.30980 6.75990 7.40723 7.61121 8.87043 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.047676 B = 0.012898 C = 0.011398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.153056 B = 2170.432076 C = 2455.903639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.089 4.089 3 H 0.054 0.946 4 C -0.098 4.098 5 C -0.089 4.089 6 H 0.064 0.936 7 C -0.139 4.139 8 C -0.087 4.087 9 C 0.244 3.756 10 O -0.585 6.585 11 C -0.564 4.564 12 H 0.045 0.955 13 C 0.029 3.971 14 N -0.910 5.910 15 Si 0.952 3.048 16 H -0.277 1.277 17 H -0.276 1.276 18 H -0.280 1.280 19 C -0.124 4.124 20 H 0.046 0.954 21 H 0.028 0.972 22 H 0.080 0.920 23 H 0.072 0.928 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.067 0.933 27 H 0.050 0.950 28 H 0.037 0.963 29 H 0.054 0.946 30 H 0.369 0.631 31 H 0.266 0.734 32 H 0.026 0.974 33 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.139 1.337 7.800 7.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.108 4.108 3 H 0.073 0.927 4 C -0.135 4.135 5 C -0.107 4.107 6 H 0.083 0.917 7 C -0.196 4.196 8 C -0.125 4.125 9 C 0.204 3.796 10 O -0.393 6.393 11 C -0.603 4.603 12 H 0.063 0.937 13 C -0.170 4.170 14 N -0.550 5.550 15 Si 0.778 3.222 16 H -0.202 1.202 17 H -0.201 1.201 18 H -0.206 1.206 19 C -0.163 4.163 20 H 0.065 0.935 21 H 0.047 0.953 22 H 0.099 0.901 23 H 0.091 0.909 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.086 0.914 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.218 0.782 31 H 0.076 0.924 32 H 0.045 0.955 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.158 1.120 8.234 8.390 hybrid contribution 0.322 -0.118 -1.898 1.929 sum 1.480 1.002 6.335 6.583 Atomic orbital electron populations 1.22019 0.95229 1.02985 0.99426 1.21095 0.96538 0.97775 0.95352 0.92723 1.21535 0.99773 0.95075 0.97118 1.21107 1.00316 0.94985 0.94275 0.91720 1.21798 1.01043 0.99955 0.96833 1.21455 0.98732 0.97945 0.94344 1.18693 0.78522 0.91001 0.91337 1.86107 1.22295 1.82263 1.48635 1.22167 1.32235 1.12696 0.93165 0.93694 1.25627 0.94768 0.95223 1.01419 1.69707 1.37555 1.23316 1.24453 0.85659 0.78166 0.78940 0.79395 1.20235 1.20067 1.20583 1.22046 0.97627 0.98936 0.97670 0.93501 0.95265 0.90131 0.90929 0.92611 0.92615 0.91412 0.93061 0.94397 0.92764 0.78192 0.92407 0.95507 0.91855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.32 7.79 71.98 0.56 -4.76 16 2 C -0.09 -3.44 3.20 -10.79 -0.03 -3.47 16 3 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 4 C -0.10 -3.25 4.73 30.60 0.14 -3.10 16 5 C -0.09 -3.12 2.39 -10.79 -0.03 -3.15 16 6 H 0.06 2.46 5.94 -2.39 -0.01 2.44 16 7 C -0.14 -3.86 9.19 71.98 0.66 -3.20 16 8 C -0.09 -3.75 4.16 30.60 0.13 -3.62 16 9 C 0.24 12.09 0.66 -11.54 -0.01 12.08 16 10 O -0.58 -29.73 8.83 -148.98 -1.32 -31.05 16 11 C -0.56 -31.20 8.25 25.60 0.21 -30.98 16 12 H 0.04 2.51 7.74 -2.91 -0.02 2.48 16 13 C 0.03 1.58 5.22 84.65 0.44 2.02 16 14 N -0.91 -49.41 9.68 21.45 0.21 -49.20 16 15 Si 0.95 43.30 29.54 68.60 2.03 45.33 16 16 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 17 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 18 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 19 C -0.12 -5.88 4.33 30.59 0.13 -5.74 16 20 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 21 H 0.03 1.19 7.90 -2.39 -0.02 1.17 16 22 H 0.08 3.29 3.79 -2.39 -0.01 3.28 16 23 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 24 H 0.06 1.79 8.14 -2.39 -0.02 1.78 16 25 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.37 19.76 6.88 -74.06 -0.51 19.25 16 31 H 0.27 13.82 8.31 -92.71 -0.77 13.05 16 32 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.06 3.34 6.07 -2.39 -0.01 3.32 16 Total: -1.00 -55.91 247.35 3.70 -52.22 By element: Atomic # 1 Polarization: 26.08 SS G_CDS: 0.57 Total: 26.64 kcal Atomic # 6 Polarization: -46.15 SS G_CDS: 2.21 Total: -43.94 kcal Atomic # 7 Polarization: -49.41 SS G_CDS: 0.21 Total: -49.20 kcal Atomic # 8 Polarization: -29.73 SS G_CDS: -1.32 Total: -31.05 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -55.91 3.70 -52.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879223.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.319 kcal (2) G-P(sol) polarization free energy of solvation -55.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds