Wall clock time and date at job start Mon Mar 30 2020 02:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47117 * 2 1 4 4 C 1.53000 * 109.47354 * 239.99821 * 2 1 3 5 5 C 1.52997 * 109.47345 * 180.02562 * 4 2 1 6 6 H 1.08992 * 109.46999 * 180.02562 * 5 4 2 7 7 C 1.53002 * 109.46799 * 300.00166 * 5 4 2 8 8 C 1.52994 * 109.47150 * 59.99777 * 5 4 2 9 9 C 1.52998 * 109.47377 * 300.00005 * 8 5 4 10 10 O 1.42900 * 109.47445 * 300.00281 * 9 8 5 11 11 C 1.50699 * 109.47355 * 179.97438 * 9 8 5 12 12 H 1.08003 * 120.00313 * 240.00442 * 11 9 8 13 13 C 1.37877 * 119.99832 * 60.00527 * 11 9 8 14 14 N 1.31517 * 120.00031 * 359.97438 * 13 11 9 15 15 Si 1.86802 * 120.00061 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47146 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47466 * 119.99752 * 15 13 11 18 18 H 1.48500 * 109.47188 * 239.99289 * 15 13 11 19 19 C 1.52998 * 109.46993 * 60.00290 * 9 8 5 20 20 H 1.09004 * 109.47377 * 300.00085 * 1 2 3 21 21 H 1.09006 * 109.46780 * 60.00031 * 1 2 3 22 22 H 1.09000 * 109.47117 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46950 * 300.00637 * 4 2 1 24 24 H 1.08994 * 109.46723 * 60.00151 * 4 2 1 25 25 H 1.09003 * 109.47073 * 168.78736 * 7 5 4 26 26 H 1.09006 * 109.47000 * 288.77910 * 7 5 4 27 27 H 1.09002 * 109.47495 * 48.78304 * 7 5 4 28 28 H 1.09002 * 109.47246 * 180.02562 * 8 5 4 29 29 H 1.09000 * 109.47105 * 60.00390 * 8 5 4 30 30 H 0.96704 * 113.99710 * 299.99783 * 10 9 8 31 31 H 0.97003 * 119.99957 * 180.02562 * 14 13 11 32 32 H 1.09004 * 109.47377 * 179.97438 * 19 9 8 33 33 H 1.09004 * 109.47612 * 59.99790 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7218 -1.2489 6 1 3.9333 -1.2353 -2.1390 7 6 4.0805 0.7205 -1.2486 8 6 4.0795 -1.4433 0.0004 9 6 3.5695 -0.7221 1.2496 10 8 4.0462 0.6251 1.2499 11 6 4.0708 -1.4331 2.4801 12 1 3.3684 -1.8433 3.1906 13 6 5.4262 -1.5600 2.6988 14 7 6.2815 -1.0609 1.8334 15 14 6.0477 -2.4420 4.2237 16 1 4.8920 -2.9081 5.0315 17 1 6.8722 -3.6090 3.8192 18 1 6.8729 -1.5097 5.0330 19 6 2.0395 -0.7216 1.2493 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 1.6766 -1.7489 -1.2492 24 1 1.6767 -0.2074 -2.1391 25 1 5.1519 0.7267 -1.0485 26 1 3.8900 1.1736 -2.2215 27 1 3.5632 1.2889 -0.4756 28 1 5.1695 -1.4433 0.0008 29 1 3.7158 -2.4709 0.0002 30 1 5.0103 0.7011 1.2501 31 1 7.2351 -1.1506 1.9871 32 1 1.6761 -0.2081 2.1395 33 1 1.6758 -1.7491 1.2491 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085879229.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:34 Heat of formation + Delta-G solvation = -78.378352 kcal Electronic energy + Delta-G solvation = -13924.989473 eV Core-core repulsion = 11756.522675 eV Total energy + Delta-G solvation = -2168.466798 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.74629 -34.46574 -32.17691 -31.98091 -29.33549 -25.83503 -25.47322 -24.88771 -20.40677 -20.14395 -17.90966 -16.65418 -14.96741 -14.52506 -14.25321 -13.87817 -13.12444 -13.09380 -12.46011 -12.15438 -11.63216 -11.46099 -11.34310 -11.31031 -10.97238 -10.56057 -10.49124 -10.28056 -10.07043 -9.83653 -9.67118 -9.49254 -9.38269 -8.72949 -8.47973 -7.61792 -6.08151 -4.19435 3.24864 3.33604 3.38019 4.36817 5.14931 5.49105 5.58634 5.63896 5.94834 6.05553 6.15573 6.22586 6.37581 6.39364 6.49254 6.56802 6.58904 6.64482 6.76586 6.90556 6.98497 7.05731 7.14708 7.25647 7.38800 7.56414 7.70493 7.83281 8.12929 8.31237 8.83747 9.49083 9.66966 10.93174 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.047669 B = 0.012898 C = 0.011399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.240587 B = 2170.371575 C = 2455.794964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 H 0.077 0.923 4 C -0.102 4.102 5 C -0.089 4.089 6 H 0.042 0.958 7 C -0.148 4.148 8 C -0.131 4.131 9 C 0.254 3.746 10 O -0.585 6.585 11 C -0.533 4.533 12 H 0.057 0.943 13 C 0.068 3.932 14 N -0.898 5.898 15 Si 0.895 3.105 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.283 1.283 19 C -0.089 4.089 20 H 0.048 0.952 21 H 0.043 0.957 22 H 0.047 0.953 23 H 0.049 0.951 24 H 0.043 0.957 25 H 0.047 0.953 26 H 0.018 0.982 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.037 0.963 30 H 0.377 0.623 31 H 0.264 0.736 32 H 0.050 0.950 33 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.150 0.961 -4.218 6.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.095 0.905 4 C -0.140 4.140 5 C -0.107 4.107 6 H 0.060 0.940 7 C -0.204 4.204 8 C -0.170 4.170 9 C 0.215 3.785 10 O -0.395 6.395 11 C -0.571 4.571 12 H 0.075 0.925 13 C -0.132 4.132 14 N -0.539 5.539 15 Si 0.723 3.277 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.127 4.127 20 H 0.067 0.933 21 H 0.063 0.937 22 H 0.066 0.934 23 H 0.068 0.932 24 H 0.062 0.938 25 H 0.067 0.933 26 H 0.037 0.963 27 H 0.111 0.889 28 H 0.110 0.890 29 H 0.055 0.945 30 H 0.228 0.772 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.607 1.097 -4.242 7.116 hybrid contribution 1.062 -0.821 0.775 1.550 sum -4.546 0.276 -3.468 5.724 Atomic orbital electron populations 1.21867 0.97054 1.00823 1.00504 1.21167 0.93319 1.00863 0.95736 0.90504 1.21556 0.96406 0.99260 0.96741 1.21092 0.94182 0.97022 0.98433 0.93989 1.22151 1.01638 0.96814 0.99822 1.22217 1.03771 0.97146 0.93822 1.18523 0.88333 0.80238 0.91455 1.86093 1.27712 1.28899 1.96763 1.21878 0.91926 1.35850 1.07449 0.92474 1.24989 0.96838 0.94954 0.96465 1.69617 1.02332 1.46681 1.35302 0.86492 0.78764 0.79338 0.83082 1.19827 1.21025 1.20953 1.21500 0.96958 0.98548 0.95651 0.93275 0.93740 0.93433 0.93235 0.93778 0.93345 0.96290 0.88869 0.88978 0.94460 0.77230 0.92577 0.93158 0.92823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.19 37.16 0.34 -1.90 16 2 C -0.09 -1.73 2.38 -90.62 -0.22 -1.94 16 3 H 0.08 1.53 5.95 -51.93 -0.31 1.22 16 4 C -0.10 -1.85 4.73 -26.73 -0.13 -1.97 16 5 C -0.09 -1.78 3.20 -90.62 -0.29 -2.07 16 6 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 7 C -0.15 -2.91 7.79 37.16 0.29 -2.62 16 8 C -0.13 -3.09 4.33 -26.74 -0.12 -3.20 16 9 C 0.25 6.23 0.66 -91.77 -0.06 6.17 16 10 O -0.59 -14.66 8.83 -35.23 -0.31 -14.97 16 11 C -0.53 -14.46 8.24 -34.44 -0.28 -14.75 16 12 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 13 C 0.07 1.83 5.22 -17.82 -0.09 1.73 16 14 N -0.90 -24.07 9.68 55.43 0.54 -23.53 16 15 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 16 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 C -0.09 -1.93 4.16 -26.73 -0.11 -2.04 16 20 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 21 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.05 1.00 7.90 -51.93 -0.41 0.59 16 26 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.09 1.95 3.79 -51.93 -0.20 1.75 16 28 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 29 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.38 9.84 6.88 45.56 0.31 10.16 16 31 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 32 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 247.35 15.07 3.73 3.73 Total: -1.00 -26.42 247.35 -6.42 -32.84 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -4.69 Total: 8.57 kcal Atomic # 6 Polarization: -21.94 SS G_CDS: -0.67 Total: -22.60 kcal Atomic # 7 Polarization: -24.07 SS G_CDS: 0.54 Total: -23.53 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: -0.31 Total: -14.97 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -26.42 -6.42 -32.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879229.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.539 kcal (2) G-P(sol) polarization free energy of solvation -26.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds