Wall clock time and date at job start Mon Mar 30 2020 02:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47117 * 2 1 4 4 C 1.53000 * 109.47354 * 239.99821 * 2 1 3 5 5 C 1.52997 * 109.47345 * 180.02562 * 4 2 1 6 6 H 1.08992 * 109.46999 * 180.02562 * 5 4 2 7 7 C 1.53002 * 109.46799 * 300.00166 * 5 4 2 8 8 C 1.52994 * 109.47150 * 59.99777 * 5 4 2 9 9 C 1.52998 * 109.47377 * 300.00005 * 8 5 4 10 10 O 1.42900 * 109.47445 * 300.00281 * 9 8 5 11 11 C 1.50699 * 109.47355 * 179.97438 * 9 8 5 12 12 H 1.08003 * 120.00313 * 240.00442 * 11 9 8 13 13 C 1.37877 * 119.99832 * 60.00527 * 11 9 8 14 14 N 1.31517 * 120.00031 * 359.97438 * 13 11 9 15 15 Si 1.86802 * 120.00061 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47146 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47466 * 119.99752 * 15 13 11 18 18 H 1.48500 * 109.47188 * 239.99289 * 15 13 11 19 19 C 1.52998 * 109.46993 * 60.00290 * 9 8 5 20 20 H 1.09004 * 109.47377 * 300.00085 * 1 2 3 21 21 H 1.09006 * 109.46780 * 60.00031 * 1 2 3 22 22 H 1.09000 * 109.47117 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46950 * 300.00637 * 4 2 1 24 24 H 1.08994 * 109.46723 * 60.00151 * 4 2 1 25 25 H 1.09003 * 109.47073 * 168.78736 * 7 5 4 26 26 H 1.09006 * 109.47000 * 288.77910 * 7 5 4 27 27 H 1.09002 * 109.47495 * 48.78304 * 7 5 4 28 28 H 1.09002 * 109.47246 * 180.02562 * 8 5 4 29 29 H 1.09000 * 109.47105 * 60.00390 * 8 5 4 30 30 H 0.96704 * 113.99710 * 299.99783 * 10 9 8 31 31 H 0.97003 * 119.99957 * 180.02562 * 14 13 11 32 32 H 1.09004 * 109.47377 * 179.97438 * 19 9 8 33 33 H 1.09004 * 109.47612 * 59.99790 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7218 -1.2489 6 1 3.9333 -1.2353 -2.1390 7 6 4.0805 0.7205 -1.2486 8 6 4.0795 -1.4433 0.0004 9 6 3.5695 -0.7221 1.2496 10 8 4.0462 0.6251 1.2499 11 6 4.0708 -1.4331 2.4801 12 1 3.3684 -1.8433 3.1906 13 6 5.4262 -1.5600 2.6988 14 7 6.2815 -1.0609 1.8334 15 14 6.0477 -2.4420 4.2237 16 1 4.8920 -2.9081 5.0315 17 1 6.8722 -3.6090 3.8192 18 1 6.8729 -1.5097 5.0330 19 6 2.0395 -0.7216 1.2493 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 1.6766 -1.7489 -1.2492 24 1 1.6767 -0.2074 -2.1391 25 1 5.1519 0.7267 -1.0485 26 1 3.8900 1.1736 -2.2215 27 1 3.5632 1.2889 -0.4756 28 1 5.1695 -1.4433 0.0008 29 1 3.7158 -2.4709 0.0002 30 1 5.0103 0.7011 1.2501 31 1 7.2351 -1.1506 1.9871 32 1 1.6761 -0.2081 2.1395 33 1 1.6758 -1.7491 1.2491 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085879229.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:34 Heat of formation + Delta-G solvation = -93.609875 kcal Electronic energy + Delta-G solvation = -13925.649962 eV Core-core repulsion = 11756.522675 eV Total energy + Delta-G solvation = -2169.127287 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.46475 -36.26226 -34.07845 -33.69187 -31.17483 -27.33629 -27.07576 -26.84489 -22.02462 -21.91740 -19.62876 -18.61173 -16.95928 -16.29044 -15.81866 -15.73205 -14.86875 -14.56473 -14.05335 -13.98838 -13.33245 -13.07978 -12.97800 -12.81991 -12.77446 -12.36083 -12.22501 -12.11418 -11.88551 -11.56184 -11.36071 -11.10387 -11.03071 -10.53423 -10.46494 -9.53967 -8.11156 -6.30937 1.37043 1.40676 1.50669 2.39948 3.07725 4.01014 4.08253 4.13967 4.33753 4.51459 4.61252 4.68983 4.86976 4.92886 4.98161 4.99710 5.04887 5.13047 5.23521 5.31036 5.32886 5.44460 5.51627 5.60309 5.62239 5.71379 5.89395 6.00599 6.19090 6.30852 6.76058 7.40633 7.60922 8.86934 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.047669 B = 0.012898 C = 0.011399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.240587 B = 2170.371575 C = 2455.794964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.088 4.088 3 H 0.064 0.936 4 C -0.098 4.098 5 C -0.089 4.089 6 H 0.054 0.946 7 C -0.140 4.140 8 C -0.124 4.124 9 C 0.243 3.757 10 O -0.585 6.585 11 C -0.563 4.563 12 H 0.045 0.955 13 C 0.029 3.971 14 N -0.910 5.910 15 Si 0.952 3.048 16 H -0.275 1.275 17 H -0.279 1.279 18 H -0.280 1.280 19 C -0.087 4.087 20 H 0.050 0.950 21 H 0.067 0.933 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.072 0.928 25 H 0.028 0.972 26 H 0.046 0.954 27 H 0.080 0.920 28 H 0.063 0.937 29 H 0.026 0.974 30 H 0.369 0.631 31 H 0.266 0.734 32 H 0.037 0.963 33 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.129 0.964 -5.057 8.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.107 4.107 3 H 0.083 0.917 4 C -0.135 4.135 5 C -0.108 4.108 6 H 0.073 0.927 7 C -0.197 4.197 8 C -0.163 4.163 9 C 0.204 3.796 10 O -0.393 6.393 11 C -0.601 4.601 12 H 0.063 0.937 13 C -0.171 4.171 14 N -0.551 5.551 15 Si 0.779 3.221 16 H -0.199 1.199 17 H -0.205 1.205 18 H -0.205 1.205 19 C -0.125 4.125 20 H 0.069 0.931 21 H 0.086 0.914 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.091 0.909 25 H 0.047 0.953 26 H 0.065 0.935 27 H 0.099 0.901 28 H 0.081 0.919 29 H 0.045 0.955 30 H 0.218 0.782 31 H 0.076 0.924 32 H 0.056 0.944 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.596 1.103 -5.087 8.403 hybrid contribution 1.398 -0.821 1.051 1.932 sum -5.198 0.282 -4.036 6.587 Atomic orbital electron populations 1.21798 0.94203 1.01809 1.01821 1.21106 0.95697 0.99571 0.94304 0.91720 1.21532 0.94473 1.00001 0.97494 1.21091 0.95984 0.96764 0.96916 0.92722 1.22021 1.00127 0.96619 1.00896 1.22045 1.01890 0.96936 0.95414 1.18696 0.90139 0.79715 0.91030 1.86109 1.26928 1.29414 1.96842 1.22194 0.92362 1.36958 1.08636 0.93698 1.25630 0.96971 0.95554 0.98901 1.69716 1.02459 1.46735 1.36146 0.85607 0.78059 0.78416 0.80062 1.19923 1.20472 1.20546 1.21456 0.94981 0.98950 0.97090 0.93053 0.91420 0.92616 0.92612 0.90930 0.95268 0.93503 0.90131 0.91855 0.95487 0.78195 0.92417 0.94389 0.92775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.86 9.19 71.98 0.66 -3.20 16 2 C -0.09 -3.12 2.38 -10.79 -0.03 -3.14 16 3 H 0.06 2.46 5.95 -2.39 -0.01 2.44 16 4 C -0.10 -3.25 4.73 30.59 0.14 -3.10 16 5 C -0.09 -3.44 3.20 -10.80 -0.03 -3.47 16 6 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 7 C -0.14 -5.33 7.79 71.98 0.56 -4.76 16 8 C -0.12 -5.88 4.33 30.59 0.13 -5.74 16 9 C 0.24 12.07 0.66 -11.54 -0.01 12.06 16 10 O -0.58 -29.72 8.83 -148.98 -1.32 -31.04 16 11 C -0.56 -31.13 8.24 25.60 0.21 -30.92 16 12 H 0.04 2.51 7.74 -2.91 -0.02 2.49 16 13 C 0.03 1.56 5.22 84.65 0.44 2.00 16 14 N -0.91 -49.41 9.68 21.45 0.21 -49.20 16 15 Si 0.95 43.32 29.54 68.60 2.03 45.34 16 16 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 17 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 18 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 19 C -0.09 -3.75 4.16 30.60 0.13 -3.62 16 20 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 21 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 22 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 23 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 24 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 25 H 0.03 1.18 7.90 -2.39 -0.02 1.17 16 26 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 27 H 0.08 3.29 3.79 -2.39 -0.01 3.28 16 28 H 0.06 3.34 6.07 -2.39 -0.01 3.32 16 29 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.37 19.76 6.88 -74.05 -0.51 19.25 16 31 H 0.27 13.78 8.31 -92.71 -0.77 13.01 16 32 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 33 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -55.95 247.35 3.70 -52.25 By element: Atomic # 1 Polarization: 25.98 SS G_CDS: 0.57 Total: 26.54 kcal Atomic # 6 Polarization: -46.11 SS G_CDS: 2.21 Total: -43.90 kcal Atomic # 7 Polarization: -49.41 SS G_CDS: 0.21 Total: -49.20 kcal Atomic # 8 Polarization: -29.72 SS G_CDS: -1.32 Total: -31.04 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Total: -55.95 3.70 -52.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879229.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.360 kcal (2) G-P(sol) polarization free energy of solvation -55.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds