Wall clock time and date at job start Mon Mar 30 2020 02:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47223 * 2 1 4 4 C 1.53001 * 109.46989 * 239.99698 * 2 1 3 5 5 C 1.53000 * 109.47355 * 299.99822 * 4 2 1 6 6 C 1.53000 * 109.47415 * 300.00324 * 5 4 2 7 7 O 1.42900 * 109.46909 * 299.99932 * 6 5 4 8 8 C 1.50694 * 109.47355 * 179.97438 * 6 5 4 9 9 H 1.08000 * 120.00563 * 239.99848 * 8 6 5 10 10 C 1.37885 * 119.99902 * 60.00012 * 8 6 5 11 11 N 1.31516 * 119.99913 * 359.97438 * 10 8 6 12 12 Si 1.86798 * 119.99766 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.46985 * 179.97438 * 12 10 8 14 14 H 1.48494 * 109.47276 * 299.99832 * 12 10 8 15 15 H 1.48498 * 109.47150 * 60.00043 * 12 10 8 16 16 C 1.53001 * 109.47124 * 59.99534 * 6 5 4 17 17 C 1.53000 * 109.46922 * 119.99899 * 2 1 3 18 18 H 1.09002 * 109.47106 * 179.97438 * 17 2 1 19 19 C 1.53001 * 109.47124 * 299.99716 * 17 2 1 20 20 H 1.08997 * 109.47359 * 299.99755 * 1 2 3 21 21 H 1.09000 * 109.47156 * 60.00508 * 1 2 3 22 22 H 1.09007 * 109.46901 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47339 * 59.99906 * 4 2 1 24 24 H 1.09002 * 109.46926 * 180.02562 * 4 2 1 25 25 H 1.08995 * 109.47242 * 180.02562 * 5 4 2 26 26 H 1.09002 * 109.46807 * 60.00291 * 5 4 2 27 27 H 0.96699 * 114.00327 * 300.00157 * 7 6 5 28 28 H 0.97001 * 119.99646 * 179.97438 * 11 10 8 29 29 H 1.09002 * 109.46926 * 60.00139 * 16 6 5 30 30 H 1.08998 * 109.46837 * 180.02562 * 16 6 5 31 31 H 1.09003 * 109.46836 * 179.97438 * 19 17 2 32 32 H 1.08998 * 109.47385 * 300.00122 * 19 17 2 33 33 H 1.08994 * 109.47075 * 60.00423 * 19 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5300 -2.1638 -1.2492 6 6 2.0400 -2.8851 0.0001 7 8 3.4690 -2.8850 0.0001 8 6 1.5372 -4.3057 0.0005 9 1 0.9163 -4.6586 0.8106 10 6 1.8698 -5.1550 -1.0336 11 7 2.6255 -4.7251 -2.0204 12 14 1.2471 -6.9161 -1.0327 13 1 1.7411 -7.6164 -2.2456 14 1 1.7427 -7.6158 0.1797 15 1 -0.2378 -6.9161 -1.0321 16 6 1.5300 -2.1637 1.2493 17 6 2.0400 -0.7212 1.2493 18 1 3.1300 -0.7216 1.2491 19 6 1.5300 0.0001 2.4985 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.6766 -0.2076 -2.1392 24 1 3.1300 -0.7217 -1.2490 25 1 1.8937 -2.6778 -2.1389 26 1 0.4400 -2.1638 -1.2492 27 1 3.8623 -3.3267 -0.7649 28 1 2.8598 -5.3227 -2.7476 29 1 0.4400 -2.1637 1.2493 30 1 1.8937 -2.6773 2.1393 31 1 1.8929 -0.5140 3.3885 32 1 1.8933 1.0277 2.4985 33 1 0.4400 0.0001 2.4985 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085879235.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:03 Heat of formation + Delta-G solvation = -81.735571 kcal Electronic energy + Delta-G solvation = -13839.812030 eV Core-core repulsion = 11671.199652 eV Total energy + Delta-G solvation = -2168.612378 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.77408 -34.88408 -32.00179 -31.29657 -29.58192 -27.05118 -25.34555 -24.20313 -20.90643 -19.97194 -17.53171 -16.60428 -14.93993 -14.79579 -14.20782 -14.12694 -13.39847 -13.11816 -12.17101 -12.06372 -11.90493 -11.54149 -11.41365 -11.16086 -10.95350 -10.71613 -10.50376 -10.46166 -10.22064 -9.86629 -9.79710 -9.39973 -9.29731 -8.71337 -8.46173 -7.83610 -6.07770 -4.18954 3.28037 3.32664 3.35955 4.37134 5.15482 5.44176 5.51519 5.55871 5.87486 5.99422 6.09634 6.21434 6.25284 6.36014 6.42198 6.51912 6.52837 6.67208 6.69925 6.72612 6.82977 6.93300 7.07983 7.21268 7.27561 7.49791 7.69057 7.83637 8.13043 8.31729 8.83798 9.49539 9.68989 10.94077 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.050304 B = 0.011883 C = 0.011395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.482804 B = 2355.679317 C = 2456.628750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.081 4.081 3 H 0.050 0.950 4 C -0.110 4.110 5 C -0.136 4.136 6 C 0.253 3.747 7 O -0.592 6.592 8 C -0.534 4.534 9 H 0.056 0.944 10 C 0.069 3.931 11 N -0.899 5.899 12 Si 0.896 3.104 13 H -0.287 1.287 14 H -0.277 1.277 15 H -0.277 1.277 16 C -0.090 4.090 17 C -0.084 4.084 18 H 0.070 0.930 19 C -0.147 4.147 20 H 0.046 0.954 21 H 0.042 0.958 22 H 0.067 0.933 23 H 0.038 0.962 24 H 0.057 0.943 25 H 0.089 0.911 26 H 0.042 0.958 27 H 0.377 0.623 28 H 0.265 0.735 29 H 0.058 0.942 30 H 0.048 0.952 31 H 0.047 0.953 32 H 0.043 0.957 33 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.318 6.626 2.507 7.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.099 4.099 3 H 0.068 0.932 4 C -0.148 4.148 5 C -0.174 4.174 6 C 0.214 3.786 7 O -0.400 6.400 8 C -0.573 4.573 9 H 0.074 0.926 10 C -0.132 4.132 11 N -0.540 5.540 12 Si 0.724 3.276 13 H -0.212 1.212 14 H -0.202 1.202 15 H -0.203 1.203 16 C -0.127 4.127 17 C -0.103 4.103 18 H 0.089 0.911 19 C -0.204 4.204 20 H 0.065 0.935 21 H 0.061 0.939 22 H 0.086 0.914 23 H 0.056 0.944 24 H 0.076 0.924 25 H 0.108 0.892 26 H 0.061 0.939 27 H 0.226 0.774 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.338 6.887 2.904 7.831 hybrid contribution -0.317 -1.317 -0.639 1.498 sum -2.655 5.570 2.265 6.573 Atomic orbital electron populations 1.21982 0.96343 1.02407 0.99988 1.21050 0.95172 0.97707 0.96007 0.93162 1.21552 1.00488 0.97683 0.95081 1.22189 0.99008 0.92788 1.03456 1.18548 0.78877 0.91762 0.89445 1.86090 1.21942 1.81207 1.50788 1.21809 1.31606 0.96988 1.06863 0.92560 1.24993 0.94585 0.98742 0.94904 1.69599 1.37496 1.35965 1.10945 0.86598 0.79154 0.84467 0.77406 1.21233 1.20211 1.20275 1.21532 0.99028 0.93160 0.98982 1.21085 1.00528 0.95713 0.92949 0.91109 1.21918 1.00852 0.99370 0.98261 0.93515 0.93865 0.91430 0.94370 0.92439 0.89229 0.93903 0.77373 0.92451 0.92384 0.93306 0.93380 0.93780 0.92970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 8.15 37.16 0.30 -2.17 16 2 C -0.08 -1.45 2.72 -90.62 -0.25 -1.70 16 3 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 4 C -0.11 -2.23 5.31 -26.73 -0.14 -2.37 16 5 C -0.14 -3.20 4.42 -26.73 -0.12 -3.32 16 6 C 0.25 6.31 0.66 -91.77 -0.06 6.25 16 7 O -0.59 -15.52 11.61 -35.23 -0.41 -15.92 16 8 C -0.53 -14.62 8.25 -34.44 -0.28 -14.90 16 9 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 10 C 0.07 1.85 5.22 -17.82 -0.09 1.75 16 11 N -0.90 -24.34 9.68 55.43 0.54 -23.80 16 12 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 13 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 14 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 C -0.09 -1.95 3.89 -26.73 -0.10 -2.06 16 17 C -0.08 -1.59 2.35 -90.62 -0.21 -1.80 16 18 H 0.07 1.45 7.68 -51.93 -0.40 1.05 16 19 C -0.15 -2.28 8.84 37.16 0.33 -1.95 16 20 H 0.05 0.68 6.43 -51.93 -0.33 0.35 16 21 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.07 1.22 4.81 -51.93 -0.25 0.97 16 23 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.06 1.21 7.68 -51.93 -0.40 0.81 16 25 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 26 H 0.04 0.99 6.43 -51.93 -0.33 0.66 16 27 H 0.38 10.14 7.15 45.56 0.33 10.47 16 28 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 29 H 0.06 1.22 6.43 -51.93 -0.33 0.89 16 30 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.77 6.43 -51.93 -0.33 0.43 16 LS Contribution 245.96 15.07 3.71 3.71 Total: -1.00 -27.00 245.96 -6.27 -33.27 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -4.45 Total: 8.98 kcal Atomic # 6 Polarization: -21.63 SS G_CDS: -0.63 Total: -22.26 kcal Atomic # 7 Polarization: -24.34 SS G_CDS: 0.54 Total: -23.80 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.41 Total: -15.92 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -27.00 -6.27 -33.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879235.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.469 kcal (2) G-P(sol) polarization free energy of solvation -27.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds