Wall clock time and date at job start Mon Mar 30 2020 02:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47223 * 2 1 4 4 C 1.53001 * 109.46989 * 239.99698 * 2 1 3 5 5 C 1.53000 * 109.47355 * 299.99822 * 4 2 1 6 6 C 1.53000 * 109.47415 * 300.00324 * 5 4 2 7 7 O 1.42900 * 109.46909 * 299.99932 * 6 5 4 8 8 C 1.50694 * 109.47355 * 179.97438 * 6 5 4 9 9 H 1.08000 * 120.00563 * 239.99848 * 8 6 5 10 10 C 1.37885 * 119.99902 * 60.00012 * 8 6 5 11 11 N 1.31516 * 119.99913 * 359.97438 * 10 8 6 12 12 Si 1.86798 * 119.99766 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.46985 * 179.97438 * 12 10 8 14 14 H 1.48494 * 109.47276 * 299.99832 * 12 10 8 15 15 H 1.48498 * 109.47150 * 60.00043 * 12 10 8 16 16 C 1.53001 * 109.47124 * 59.99534 * 6 5 4 17 17 C 1.53000 * 109.46922 * 119.99899 * 2 1 3 18 18 H 1.09002 * 109.47106 * 179.97438 * 17 2 1 19 19 C 1.53001 * 109.47124 * 299.99716 * 17 2 1 20 20 H 1.08997 * 109.47359 * 299.99755 * 1 2 3 21 21 H 1.09000 * 109.47156 * 60.00508 * 1 2 3 22 22 H 1.09007 * 109.46901 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47339 * 59.99906 * 4 2 1 24 24 H 1.09002 * 109.46926 * 180.02562 * 4 2 1 25 25 H 1.08995 * 109.47242 * 180.02562 * 5 4 2 26 26 H 1.09002 * 109.46807 * 60.00291 * 5 4 2 27 27 H 0.96699 * 114.00327 * 300.00157 * 7 6 5 28 28 H 0.97001 * 119.99646 * 179.97438 * 11 10 8 29 29 H 1.09002 * 109.46926 * 60.00139 * 16 6 5 30 30 H 1.08998 * 109.46837 * 180.02562 * 16 6 5 31 31 H 1.09003 * 109.46836 * 179.97438 * 19 17 2 32 32 H 1.08998 * 109.47385 * 300.00122 * 19 17 2 33 33 H 1.08994 * 109.47075 * 60.00423 * 19 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5300 -2.1638 -1.2492 6 6 2.0400 -2.8851 0.0001 7 8 3.4690 -2.8850 0.0001 8 6 1.5372 -4.3057 0.0005 9 1 0.9163 -4.6586 0.8106 10 6 1.8698 -5.1550 -1.0336 11 7 2.6255 -4.7251 -2.0204 12 14 1.2471 -6.9161 -1.0327 13 1 1.7411 -7.6164 -2.2456 14 1 1.7427 -7.6158 0.1797 15 1 -0.2378 -6.9161 -1.0321 16 6 1.5300 -2.1637 1.2493 17 6 2.0400 -0.7212 1.2493 18 1 3.1300 -0.7216 1.2491 19 6 1.5300 0.0001 2.4985 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.6766 -0.2076 -2.1392 24 1 3.1300 -0.7217 -1.2490 25 1 1.8937 -2.6778 -2.1389 26 1 0.4400 -2.1638 -1.2492 27 1 3.8623 -3.3267 -0.7649 28 1 2.8598 -5.3227 -2.7476 29 1 0.4400 -2.1637 1.2493 30 1 1.8937 -2.6773 2.1393 31 1 1.8929 -0.5140 3.3885 32 1 1.8933 1.0277 2.4985 33 1 0.4400 0.0001 2.4985 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085879235.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:03 Heat of formation + Delta-G solvation = -98.189275 kcal Electronic energy + Delta-G solvation = -13840.525516 eV Core-core repulsion = 11671.199652 eV Total energy + Delta-G solvation = -2169.325864 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.45847 -36.72281 -34.08893 -32.86089 -31.40219 -28.59762 -27.07344 -25.88613 -22.55725 -21.76598 -19.27992 -18.52533 -16.96513 -16.43388 -15.93252 -15.75197 -15.07871 -14.85843 -13.82702 -13.62875 -13.56621 -13.19895 -12.99580 -12.83408 -12.65033 -12.41178 -12.25758 -12.19490 -12.05950 -11.54220 -11.50086 -10.98768 -10.97544 -10.55348 -10.43750 -9.82898 -8.12408 -6.32257 1.39784 1.40658 1.48325 2.39667 3.06906 3.98606 4.03129 4.07864 4.37487 4.50040 4.62386 4.72943 4.75909 4.85798 4.89918 4.97264 5.00514 5.17387 5.21048 5.24200 5.29971 5.34999 5.43888 5.57983 5.62670 5.67857 5.79264 5.94811 6.17612 6.28840 6.74746 7.39257 7.57463 8.86383 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.050304 B = 0.011883 C = 0.011395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.482804 B = 2355.679317 C = 2456.628750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.078 4.078 3 H 0.076 0.924 4 C -0.107 4.107 5 C -0.127 4.127 6 C 0.239 3.761 7 O -0.598 6.598 8 C -0.565 4.565 9 H 0.047 0.953 10 C 0.028 3.972 11 N -0.912 5.912 12 Si 0.954 3.046 13 H -0.280 1.280 14 H -0.277 1.277 15 H -0.272 1.272 16 C -0.086 4.086 17 C -0.081 4.081 18 H 0.049 0.951 19 C -0.140 4.140 20 H 0.070 0.930 21 H 0.057 0.943 22 H 0.045 0.955 23 H 0.055 0.945 24 H 0.042 0.958 25 H 0.059 0.941 26 H 0.040 0.960 27 H 0.369 0.631 28 H 0.267 0.733 29 H 0.064 0.936 30 H 0.033 0.967 31 H 0.048 0.952 32 H 0.066 0.934 33 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.217 7.759 2.929 8.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.097 4.097 3 H 0.094 0.906 4 C -0.144 4.144 5 C -0.165 4.165 6 C 0.200 3.800 7 O -0.406 6.406 8 C -0.603 4.603 9 H 0.065 0.935 10 C -0.172 4.172 11 N -0.553 5.553 12 Si 0.780 3.220 13 H -0.205 1.205 14 H -0.202 1.202 15 H -0.198 1.198 16 C -0.123 4.123 17 C -0.100 4.100 18 H 0.067 0.933 19 C -0.197 4.197 20 H 0.089 0.911 21 H 0.076 0.924 22 H 0.064 0.936 23 H 0.074 0.926 24 H 0.061 0.939 25 H 0.078 0.922 26 H 0.058 0.942 27 H 0.217 0.783 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.240 8.030 3.331 9.278 hybrid contribution -0.014 -1.694 -0.785 1.867 sum -3.254 6.337 2.547 7.565 Atomic orbital electron populations 1.21935 0.94873 1.01547 1.01954 1.21059 0.96349 0.98381 0.93871 0.90560 1.21498 0.99527 0.95925 0.97468 1.21985 0.98609 0.94647 1.01292 1.18808 0.78031 0.91519 0.91634 1.86091 1.23046 1.81036 1.50422 1.22134 1.32323 0.98807 1.07041 0.93489 1.25669 0.94734 1.02191 0.94564 1.69707 1.37604 1.36918 1.11039 0.85687 0.78773 0.80178 0.77394 1.20532 1.20240 1.19752 1.21478 0.99261 0.94950 0.96649 1.21031 0.99234 0.94223 0.95512 0.93250 1.21847 1.01558 1.00102 0.96199 0.91120 0.92422 0.93632 0.92604 0.93941 0.92248 0.94157 0.78258 0.92349 0.91750 0.94835 0.93284 0.91501 0.91757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.34 8.15 71.98 0.59 -3.75 16 2 C -0.08 -2.60 2.72 -10.79 -0.03 -2.63 16 3 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 4 C -0.11 -4.19 5.31 30.59 0.16 -4.03 16 5 C -0.13 -6.01 4.42 30.59 0.14 -5.88 16 6 C 0.24 12.11 0.66 -11.54 -0.01 12.10 16 7 O -0.60 -32.16 11.61 -148.98 -1.73 -33.89 16 8 C -0.56 -31.46 8.25 25.60 0.21 -31.25 16 9 H 0.05 2.62 7.74 -2.91 -0.02 2.60 16 10 C 0.03 1.52 5.22 84.66 0.44 1.96 16 11 N -0.91 -50.11 9.68 21.45 0.21 -49.90 16 12 Si 0.95 43.36 29.54 68.60 2.03 45.39 16 13 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 14 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 15 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 16 C -0.09 -3.74 3.89 30.59 0.12 -3.62 16 17 C -0.08 -2.94 2.35 -10.79 -0.03 -2.97 16 18 H 0.05 1.99 7.68 -2.39 -0.02 1.97 16 19 C -0.14 -3.91 8.84 71.98 0.64 -3.28 16 20 H 0.07 1.76 6.43 -2.39 -0.02 1.75 16 21 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 22 H 0.04 1.55 4.81 -2.38 -0.01 1.54 16 23 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 24 H 0.04 1.77 7.68 -2.39 -0.02 1.75 16 25 H 0.06 3.15 6.07 -2.39 -0.01 3.14 16 26 H 0.04 1.88 6.43 -2.39 -0.02 1.86 16 27 H 0.37 20.55 7.15 -74.06 -0.53 20.02 16 28 H 0.27 14.00 8.31 -92.71 -0.77 13.23 16 29 H 0.06 2.68 6.43 -2.39 -0.02 2.66 16 30 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.07 1.58 8.14 -2.39 -0.02 1.57 16 33 H 0.06 1.65 6.43 -2.39 -0.02 1.63 16 Total: -1.00 -57.68 245.96 3.29 -54.39 By element: Atomic # 1 Polarization: 26.80 SS G_CDS: 0.56 Total: 27.36 kcal Atomic # 6 Polarization: -45.57 SS G_CDS: 2.23 Total: -43.34 kcal Atomic # 7 Polarization: -50.11 SS G_CDS: 0.21 Total: -49.90 kcal Atomic # 8 Polarization: -32.16 SS G_CDS: -1.73 Total: -33.89 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -57.68 3.29 -54.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879235.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.801 kcal (2) G-P(sol) polarization free energy of solvation -57.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds