Wall clock time and date at job start Mon Mar 30 2020 02:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47170 * 2 1 4 4 C 1.53002 * 109.47189 * 239.99842 * 2 1 3 5 5 C 1.52999 * 109.47189 * 179.97438 * 4 2 1 6 6 C 1.53005 * 109.46940 * 60.00125 * 5 4 2 7 7 O 1.42895 * 109.47114 * 59.99898 * 6 5 4 8 8 C 1.50702 * 109.46710 * 180.02562 * 6 5 4 9 9 H 1.07995 * 120.00147 * 118.87281 * 8 6 5 10 10 C 1.37881 * 119.99563 * 298.86634 * 8 6 5 11 11 N 1.31509 * 120.00464 * 0.99996 * 10 8 6 12 12 Si 1.86811 * 119.99449 * 181.28317 * 10 8 6 13 13 H 1.48501 * 109.46597 * 269.72273 * 12 10 8 14 14 H 1.48500 * 109.47271 * 29.72243 * 12 10 8 15 15 H 1.48504 * 109.46887 * 149.72447 * 12 10 8 16 16 C 1.52997 * 109.47207 * 299.99631 * 6 5 4 17 17 C 1.52998 * 109.47015 * 119.99690 * 2 1 3 18 18 H 1.08995 * 109.47564 * 300.00137 * 17 2 1 19 19 C 1.52997 * 109.47051 * 60.00073 * 17 2 1 20 20 H 1.09000 * 109.47170 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47044 * 300.00408 * 1 2 3 22 22 H 1.09000 * 109.46931 * 59.99676 * 1 2 3 23 23 H 1.09007 * 109.47117 * 60.00210 * 4 2 1 24 24 H 1.09000 * 109.47194 * 300.00143 * 4 2 1 25 25 H 1.09000 * 109.47170 * 300.00158 * 5 4 2 26 26 H 1.08998 * 109.47044 * 179.97438 * 5 4 2 27 27 H 0.96698 * 113.99799 * 53.40187 * 7 6 5 28 28 H 0.97000 * 120.00016 * 355.79629 * 11 10 8 29 29 H 1.08993 * 109.47186 * 180.02562 * 16 6 5 30 30 H 1.09006 * 109.46958 * 300.00826 * 16 6 5 31 31 H 1.09004 * 109.47406 * 48.23116 * 19 17 2 32 32 H 1.09006 * 109.47353 * 168.22907 * 19 17 2 33 33 H 1.09002 * 109.47575 * 288.23452 * 19 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7207 -1.2496 6 6 4.0805 -1.4416 -0.0003 7 8 3.6046 -2.7890 0.0001 8 6 5.5875 -1.4405 -0.0003 9 1 6.1272 -0.9566 0.8003 10 6 6.2773 -2.0574 -1.0225 11 7 5.6203 -2.6297 -2.0075 12 14 8.1450 -2.0871 -1.0039 13 1 8.6661 -0.8921 -1.7152 14 1 8.6264 -2.0761 0.4008 15 1 8.6273 -3.3167 -1.6828 16 6 3.5706 -0.7203 1.2490 17 6 2.0400 -0.7212 1.2493 18 1 1.6766 -0.2074 2.1392 19 6 1.5300 -2.1636 1.2493 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 1.6767 -0.2074 -2.1393 24 1 1.6767 -1.7490 -1.2492 25 1 3.9330 0.3071 -1.2498 26 1 3.9333 -1.2350 -2.1393 27 1 3.8043 -3.2768 -0.8106 28 1 4.6514 -2.6714 -1.9846 29 1 3.9346 -1.2336 2.1389 30 1 3.9335 0.3075 1.2486 31 1 1.7120 -2.6135 0.2732 32 1 2.0543 -2.7344 2.0158 33 1 0.4603 -2.1709 1.4588 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085879257.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:05 Heat of formation + Delta-G solvation = -70.684774 kcal Electronic energy + Delta-G solvation = -13973.505966 eV Core-core repulsion = 11805.372787 eV Total energy + Delta-G solvation = -2168.133180 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.13922 -35.26844 -32.12574 -30.90063 -30.29787 -27.29537 -25.08804 -23.51972 -21.55550 -19.92235 -17.85867 -17.70112 -15.45341 -14.27037 -13.93956 -13.84179 -13.61865 -13.34582 -12.70144 -12.24343 -11.88558 -11.57749 -11.47666 -11.08870 -10.86240 -10.80248 -10.59875 -10.20418 -10.17188 -10.07275 -9.84824 -9.61735 -9.41414 -8.84861 -8.41859 -7.76305 -6.34451 -4.19022 3.39735 3.43922 3.59588 4.46882 5.16053 5.32912 5.36012 5.46049 5.85590 5.87218 6.01519 6.08113 6.14284 6.19549 6.30958 6.34316 6.47872 6.50928 6.60354 6.64578 6.78806 6.86089 6.93360 6.98458 7.18528 7.34075 7.43489 7.56693 8.10434 8.36021 8.73667 9.19954 9.52714 10.90045 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.061058 B = 0.011585 C = 0.011209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.469069 B = 2416.254814 C = 2497.427664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 H 0.058 0.942 4 C -0.113 4.113 5 C -0.148 4.148 6 C 0.238 3.762 7 O -0.579 6.579 8 C -0.610 4.610 9 H 0.051 0.949 10 C 0.028 3.972 11 N -0.915 5.915 12 Si 1.070 2.930 13 H -0.288 1.288 14 H -0.289 1.289 15 H -0.284 1.284 16 C -0.086 4.086 17 C -0.082 4.082 18 H 0.048 0.952 19 C -0.140 4.140 20 H 0.055 0.945 21 H 0.046 0.954 22 H 0.046 0.954 23 H 0.041 0.959 24 H 0.063 0.937 25 H 0.049 0.951 26 H 0.074 0.926 27 H 0.358 0.642 28 H 0.269 0.731 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.089 0.911 32 H 0.045 0.955 33 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.588 3.310 2.459 7.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.103 4.103 3 H 0.077 0.923 4 C -0.150 4.150 5 C -0.186 4.186 6 C 0.199 3.801 7 O -0.387 6.387 8 C -0.648 4.648 9 H 0.070 0.930 10 C -0.175 4.175 11 N -0.558 5.558 12 Si 0.898 3.102 13 H -0.215 1.215 14 H -0.215 1.215 15 H -0.209 1.209 16 C -0.124 4.124 17 C -0.100 4.100 18 H 0.066 0.934 19 C -0.197 4.197 20 H 0.074 0.926 21 H 0.065 0.935 22 H 0.065 0.935 23 H 0.060 0.940 24 H 0.082 0.918 25 H 0.068 0.932 26 H 0.093 0.907 27 H 0.207 0.793 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.107 0.893 32 H 0.064 0.936 33 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -5.498 3.011 2.206 6.645 hybrid contribution -1.025 0.514 0.372 1.206 sum -6.523 3.525 2.578 7.850 Atomic orbital electron populations 1.21864 0.96420 1.01493 1.00423 1.21108 0.94230 0.98885 0.96027 0.92330 1.21642 0.97642 1.00123 0.95592 1.22380 0.92781 1.01183 1.02294 1.18784 0.91814 0.79486 0.90029 1.86455 1.81083 1.27208 1.43943 1.22567 0.91944 1.38928 1.11362 0.93049 1.25810 1.07079 0.92665 0.91991 1.70973 1.09908 1.42847 1.32079 0.83535 0.74294 0.76751 0.75576 1.21459 1.21482 1.20941 1.21467 0.92983 0.99111 0.98837 1.21089 0.96529 0.96525 0.95901 0.93368 1.22042 0.96978 0.96002 1.04657 0.92595 0.93520 0.93523 0.93994 0.91830 0.93169 0.90741 0.79306 0.91494 0.92849 0.92631 0.89268 0.93570 0.95562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 8.86 37.16 0.33 -1.77 16 2 C -0.08 -1.46 2.49 -90.62 -0.23 -1.69 16 3 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 4 C -0.11 -2.16 4.87 -26.73 -0.13 -2.29 16 5 C -0.15 -3.40 4.56 -26.73 -0.12 -3.52 16 6 C 0.24 5.82 0.66 -91.77 -0.06 5.76 16 7 O -0.58 -14.28 8.74 -35.23 -0.31 -14.58 16 8 C -0.61 -16.90 8.24 -34.44 -0.28 -17.18 16 9 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 10 C 0.03 0.77 5.25 -17.82 -0.09 0.67 16 11 N -0.91 -25.95 12.57 55.43 0.70 -25.26 16 12 Si 1.07 24.88 29.90 -169.99 -5.08 19.80 16 13 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 14 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 C -0.09 -1.89 4.52 -26.70 -0.12 -2.02 16 17 C -0.08 -1.53 2.72 -90.59 -0.25 -1.78 16 18 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 19 C -0.14 -2.61 7.08 37.16 0.26 -2.35 16 20 H 0.05 0.81 6.71 -51.93 -0.35 0.46 16 21 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 22 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.04 0.74 8.14 -51.92 -0.42 0.32 16 24 H 0.06 1.24 5.93 -51.93 -0.31 0.93 16 25 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 26 H 0.07 1.86 5.37 -51.93 -0.28 1.59 16 27 H 0.36 8.99 6.23 45.56 0.28 9.27 16 28 H 0.27 7.34 3.45 -40.82 -0.14 7.20 16 29 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.09 1.79 3.81 -51.93 -0.20 1.59 16 32 H 0.05 0.90 8.07 -51.93 -0.42 0.48 16 33 H 0.03 0.42 7.11 -51.93 -0.37 0.05 16 LS Contribution 241.34 15.07 3.64 3.64 Total: -1.00 -28.19 241.34 -6.11 -34.30 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -4.36 Total: 8.26 kcal Atomic # 6 Polarization: -25.46 SS G_CDS: -0.69 Total: -26.15 kcal Atomic # 7 Polarization: -25.95 SS G_CDS: 0.70 Total: -25.26 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: -0.31 Total: -14.58 kcal Atomic # 14 Polarization: 24.88 SS G_CDS: -5.08 Total: 19.80 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -28.19 -6.11 -34.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879257.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.384 kcal (2) G-P(sol) polarization free energy of solvation -28.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds