Wall clock time and date at job start Mon Mar 30 2020 02:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47170 * 2 1 4 4 C 1.53002 * 109.47189 * 239.99842 * 2 1 3 5 5 C 1.52999 * 109.47189 * 179.97438 * 4 2 1 6 6 C 1.53005 * 109.46940 * 60.00125 * 5 4 2 7 7 O 1.42895 * 109.47114 * 59.99898 * 6 5 4 8 8 C 1.50702 * 109.46710 * 180.02562 * 6 5 4 9 9 H 1.07995 * 120.00147 * 118.87281 * 8 6 5 10 10 C 1.37881 * 119.99563 * 298.86634 * 8 6 5 11 11 N 1.31509 * 120.00464 * 0.99996 * 10 8 6 12 12 Si 1.86811 * 119.99449 * 181.28317 * 10 8 6 13 13 H 1.48501 * 109.46597 * 269.72273 * 12 10 8 14 14 H 1.48500 * 109.47271 * 29.72243 * 12 10 8 15 15 H 1.48504 * 109.46887 * 149.72447 * 12 10 8 16 16 C 1.52997 * 109.47207 * 299.99631 * 6 5 4 17 17 C 1.52998 * 109.47015 * 119.99690 * 2 1 3 18 18 H 1.08995 * 109.47564 * 300.00137 * 17 2 1 19 19 C 1.52997 * 109.47051 * 60.00073 * 17 2 1 20 20 H 1.09000 * 109.47170 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47044 * 300.00408 * 1 2 3 22 22 H 1.09000 * 109.46931 * 59.99676 * 1 2 3 23 23 H 1.09007 * 109.47117 * 60.00210 * 4 2 1 24 24 H 1.09000 * 109.47194 * 300.00143 * 4 2 1 25 25 H 1.09000 * 109.47170 * 300.00158 * 5 4 2 26 26 H 1.08998 * 109.47044 * 179.97438 * 5 4 2 27 27 H 0.96698 * 113.99799 * 53.40187 * 7 6 5 28 28 H 0.97000 * 120.00016 * 355.79629 * 11 10 8 29 29 H 1.08993 * 109.47186 * 180.02562 * 16 6 5 30 30 H 1.09006 * 109.46958 * 300.00826 * 16 6 5 31 31 H 1.09004 * 109.47406 * 48.23116 * 19 17 2 32 32 H 1.09006 * 109.47353 * 168.22907 * 19 17 2 33 33 H 1.09002 * 109.47575 * 288.23452 * 19 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7207 -1.2496 6 6 4.0805 -1.4416 -0.0003 7 8 3.6046 -2.7890 0.0001 8 6 5.5875 -1.4405 -0.0003 9 1 6.1272 -0.9566 0.8003 10 6 6.2773 -2.0574 -1.0225 11 7 5.6203 -2.6297 -2.0075 12 14 8.1450 -2.0871 -1.0039 13 1 8.6661 -0.8921 -1.7152 14 1 8.6264 -2.0761 0.4008 15 1 8.6273 -3.3167 -1.6828 16 6 3.5706 -0.7203 1.2490 17 6 2.0400 -0.7212 1.2493 18 1 1.6766 -0.2074 2.1392 19 6 1.5300 -2.1636 1.2493 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 1.6767 -0.2074 -2.1393 24 1 1.6767 -1.7490 -1.2492 25 1 3.9330 0.3071 -1.2498 26 1 3.9333 -1.2350 -2.1393 27 1 3.8043 -3.2768 -0.8106 28 1 4.6514 -2.6714 -1.9846 29 1 3.9346 -1.2336 2.1389 30 1 3.9335 0.3075 1.2486 31 1 1.7120 -2.6135 0.2732 32 1 2.0543 -2.7344 2.0158 33 1 0.4603 -2.1709 1.4588 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085879257.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:05 Heat of formation + Delta-G solvation = -87.448873 kcal Electronic energy + Delta-G solvation = -13974.232912 eV Core-core repulsion = 11805.372787 eV Total energy + Delta-G solvation = -2168.860125 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.84628 -37.03270 -34.17067 -32.49970 -32.04093 -28.89511 -26.86916 -25.22365 -23.18052 -21.68248 -19.88318 -19.33332 -17.12599 -16.16115 -15.79734 -15.67629 -15.21173 -14.81209 -14.24680 -13.86938 -13.65351 -13.27018 -12.99352 -12.69430 -12.64864 -12.51042 -12.28079 -11.99097 -11.95130 -11.72517 -11.47804 -11.11705 -11.10005 -10.66408 -10.43914 -9.73989 -8.50671 -6.38798 1.50812 1.58158 1.76510 2.53165 3.08192 3.80702 3.89509 3.95097 4.13785 4.43486 4.47390 4.56824 4.63242 4.68592 4.80683 4.90015 4.93992 4.99909 5.15654 5.16077 5.19156 5.25718 5.33578 5.48532 5.52274 5.60127 5.66377 5.88721 6.06243 6.19407 6.60289 7.17583 7.39851 8.73849 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.061058 B = 0.011585 C = 0.011209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.469069 B = 2416.254814 C = 2497.427664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.082 4.082 3 H 0.061 0.939 4 C -0.106 4.106 5 C -0.140 4.140 6 C 0.228 3.772 7 O -0.577 6.577 8 C -0.636 4.636 9 H 0.037 0.963 10 C -0.015 4.015 11 N -0.931 5.931 12 Si 1.111 2.889 13 H -0.274 1.274 14 H -0.280 1.280 15 H -0.281 1.281 16 C -0.086 4.086 17 C -0.079 4.079 18 H 0.071 0.929 19 C -0.135 4.135 20 H 0.057 0.943 21 H 0.064 0.936 22 H 0.060 0.940 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.039 0.961 26 H 0.048 0.952 27 H 0.352 0.648 28 H 0.268 0.732 29 H 0.037 0.963 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.028 0.972 33 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.792 4.063 2.754 9.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.100 4.100 3 H 0.079 0.921 4 C -0.144 4.144 5 C -0.179 4.179 6 C 0.189 3.811 7 O -0.384 6.384 8 C -0.674 4.674 9 H 0.056 0.944 10 C -0.214 4.214 11 N -0.575 5.575 12 Si 0.934 3.066 13 H -0.200 1.200 14 H -0.206 1.206 15 H -0.207 1.207 16 C -0.124 4.124 17 C -0.097 4.097 18 H 0.090 0.910 19 C -0.192 4.192 20 H 0.076 0.924 21 H 0.083 0.917 22 H 0.079 0.921 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.200 0.800 28 H 0.083 0.917 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.048 0.952 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.724 3.774 2.508 8.108 hybrid contribution -0.641 0.273 0.298 0.758 sum -7.364 4.047 2.806 8.859 Atomic orbital electron populations 1.21798 0.93482 1.02143 1.02111 1.21092 0.96610 0.98300 0.94004 0.92098 1.21586 0.94485 1.00629 0.97651 1.22204 0.95778 0.99691 1.00197 1.18924 0.90506 0.79673 0.92011 1.86476 1.80871 1.27478 1.43603 1.22954 0.94151 1.39165 1.11123 0.94433 1.27007 1.10687 0.92086 0.91600 1.71026 1.10185 1.43653 1.32639 0.82994 0.70165 0.77247 0.76163 1.20011 1.20552 1.20688 1.21448 0.95876 0.98344 0.96742 1.21095 0.93753 0.97115 0.97760 0.91019 1.21950 0.98669 0.95519 1.03040 0.92443 0.91714 0.92085 0.92242 0.92155 0.94198 0.93350 0.79979 0.91704 0.94427 0.92646 0.90978 0.95246 0.92570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 8.86 71.98 0.64 -2.79 16 2 C -0.08 -2.61 2.49 -10.79 -0.03 -2.64 16 3 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 4 C -0.11 -3.91 4.87 30.59 0.15 -3.76 16 5 C -0.14 -6.46 4.56 30.60 0.14 -6.32 16 6 C 0.23 11.28 0.66 -11.54 -0.01 11.27 16 7 O -0.58 -28.88 8.74 -148.98 -1.30 -30.18 16 8 C -0.64 -35.90 8.24 25.60 0.21 -35.68 16 9 H 0.04 2.15 7.74 -2.91 -0.02 2.13 16 10 C -0.01 -0.82 5.25 84.66 0.44 -0.38 16 11 N -0.93 -53.58 12.57 21.45 0.27 -53.31 16 12 Si 1.11 50.27 29.90 68.60 2.05 52.32 16 13 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 14 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 15 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 16 C -0.09 -3.77 4.52 30.61 0.14 -3.63 16 17 C -0.08 -2.77 2.72 -10.77 -0.03 -2.80 16 18 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 19 C -0.14 -4.77 7.08 71.98 0.51 -4.26 16 20 H 0.06 1.42 6.71 -2.39 -0.02 1.40 16 21 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 22 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 24 H 0.06 2.27 5.93 -2.39 -0.01 2.25 16 25 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.05 2.46 5.37 -2.39 -0.01 2.45 16 27 H 0.35 18.15 6.23 -74.06 -0.46 17.69 16 28 H 0.27 14.95 3.45 -92.71 -0.32 14.63 16 29 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.05 2.36 8.14 -2.38 -0.02 2.34 16 31 H 0.07 2.81 3.81 -2.39 -0.01 2.80 16 32 H 0.03 1.10 8.07 -2.38 -0.02 1.08 16 33 H 0.06 1.64 7.11 -2.39 -0.02 1.62 16 Total: -1.00 -60.02 241.34 4.26 -55.76 By element: Atomic # 1 Polarization: 25.34 SS G_CDS: 1.07 Total: 26.41 kcal Atomic # 6 Polarization: -53.16 SS G_CDS: 2.17 Total: -50.99 kcal Atomic # 7 Polarization: -53.58 SS G_CDS: 0.27 Total: -53.31 kcal Atomic # 8 Polarization: -28.88 SS G_CDS: -1.30 Total: -30.18 kcal Atomic # 14 Polarization: 50.27 SS G_CDS: 2.05 Total: 52.32 kcal Total: -60.02 4.26 -55.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879257.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.691 kcal (2) G-P(sol) polarization free energy of solvation -60.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds