Wall clock time and date at job start Mon Mar 30 2020 02:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47067 * 2 1 4 4 C 1.52997 * 109.47143 * 239.99982 * 2 1 3 5 5 C 1.53002 * 109.46817 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.47233 * 60.00194 * 5 4 2 7 7 C 1.52997 * 109.47060 * 299.99657 * 6 5 4 8 8 O 1.42905 * 109.47264 * 300.00236 * 7 6 5 9 9 C 1.50697 * 109.47466 * 180.02562 * 7 6 5 10 10 H 1.07999 * 120.00055 * 240.00165 * 9 7 6 11 11 C 1.37878 * 119.99687 * 60.00188 * 9 7 6 12 12 N 1.31511 * 120.00458 * 359.97438 * 11 9 7 13 13 Si 1.86805 * 119.99926 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.46980 * 89.99582 * 13 11 9 15 15 H 1.48493 * 109.47135 * 209.99651 * 13 11 9 16 16 H 1.48498 * 109.47274 * 330.00048 * 13 11 9 17 17 C 1.52999 * 109.47317 * 59.99960 * 7 6 5 18 18 H 1.09000 * 109.47486 * 180.02562 * 17 7 6 19 19 C 1.53006 * 109.46997 * 60.00177 * 17 7 6 20 20 H 1.09002 * 109.47067 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47312 * 300.00027 * 1 2 3 22 22 H 1.09004 * 109.46930 * 60.00083 * 1 2 3 23 23 H 1.08993 * 109.47194 * 59.99677 * 4 2 1 24 24 H 1.09002 * 109.46695 * 299.99691 * 4 2 1 25 25 H 1.08992 * 109.47063 * 299.99823 * 5 4 2 26 26 H 1.09004 * 109.46733 * 179.97438 * 5 4 2 27 27 H 1.09002 * 109.47398 * 59.99826 * 6 5 4 28 28 H 1.09001 * 109.47194 * 180.02562 * 6 5 4 29 29 H 0.96696 * 114.00036 * 299.99911 * 8 7 6 30 30 H 0.96999 * 120.00480 * 179.97438 * 12 11 9 31 31 H 1.09000 * 109.46866 * 300.00212 * 19 17 7 32 32 H 1.08996 * 109.47261 * 59.99820 * 19 17 7 33 33 H 1.09001 * 109.47377 * 180.02562 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5700 -0.7218 -1.2488 6 6 4.0795 -1.4434 0.0004 7 6 3.5695 -0.7222 1.2496 8 8 4.0463 0.6250 1.2499 9 6 4.0718 -1.4325 2.4801 10 1 3.3699 -1.8429 3.1910 11 6 5.4273 -1.5584 2.6983 12 7 6.2820 -1.0591 1.8325 13 14 6.0500 -2.4396 4.2233 14 1 6.2151 -3.8853 3.9268 15 1 7.3581 -1.8647 4.6277 16 1 5.0718 -2.2693 5.3275 17 6 2.0395 -0.7215 1.2493 18 1 1.6761 -0.2073 2.1391 19 6 1.5290 -2.1639 1.2491 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.6767 -0.2075 -2.1392 24 1 1.6767 -1.7489 -1.2491 25 1 3.9337 0.3057 -1.2486 26 1 3.9334 -1.2360 -2.1386 27 1 3.7158 -2.4710 0.0002 28 1 5.1695 -1.4434 0.0009 29 1 5.0103 0.7011 1.2502 30 1 7.2357 -1.1473 1.9862 31 1 1.8923 -2.6777 0.3591 32 1 1.8919 -2.6780 2.1390 33 1 0.4389 -2.1635 1.2484 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085879269.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:06 Heat of formation + Delta-G solvation = -79.677854 kcal Electronic energy + Delta-G solvation = -13944.870113 eV Core-core repulsion = 11776.346964 eV Total energy + Delta-G solvation = -2168.523149 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.79550 -34.56359 -32.01063 -31.42032 -30.20451 -26.37324 -25.10724 -24.22373 -20.96293 -20.13425 -17.33470 -16.70022 -15.02279 -14.57589 -14.50217 -13.92235 -13.34645 -13.07460 -12.19182 -12.01469 -11.70692 -11.57377 -11.21818 -11.13639 -10.89235 -10.81085 -10.56657 -10.42956 -10.08288 -9.95427 -9.68019 -9.45391 -9.21502 -8.67051 -8.42458 -7.81727 -6.07085 -4.17301 3.26254 3.33668 3.37515 4.37551 5.15509 5.49215 5.58023 5.66236 5.92945 6.06569 6.15983 6.23787 6.25297 6.42160 6.46034 6.52472 6.63161 6.70594 6.74937 6.84048 6.94181 7.02452 7.07323 7.21212 7.32087 7.49189 7.69573 7.84668 8.13019 8.32929 8.84989 9.50561 9.69086 10.94934 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.049223 B = 0.013031 C = 0.011827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.700335 B = 2148.153303 C = 2366.811437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 H 0.070 0.930 4 C -0.108 4.108 5 C -0.116 4.116 6 C -0.138 4.138 7 C 0.258 3.742 8 O -0.592 6.592 9 C -0.528 4.528 10 H 0.059 0.941 11 C 0.067 3.933 12 N -0.900 5.900 13 Si 0.894 3.106 14 H -0.281 1.281 15 H -0.286 1.286 16 H -0.274 1.274 17 C -0.063 4.063 18 H 0.056 0.944 19 C -0.138 4.138 20 H 0.052 0.948 21 H 0.047 0.953 22 H 0.042 0.958 23 H 0.042 0.958 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.037 0.963 27 H 0.042 0.958 28 H 0.090 0.910 29 H 0.377 0.623 30 H 0.264 0.736 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.952 -0.402 -3.704 7.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.103 4.103 3 H 0.088 0.912 4 C -0.146 4.146 5 C -0.154 4.154 6 C -0.176 4.176 7 C 0.219 3.781 8 O -0.401 6.401 9 C -0.567 4.567 10 H 0.077 0.923 11 C -0.133 4.133 12 N -0.541 5.541 13 Si 0.723 3.277 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.199 1.199 17 C -0.082 4.082 18 H 0.074 0.926 19 C -0.195 4.195 20 H 0.071 0.929 21 H 0.066 0.934 22 H 0.061 0.939 23 H 0.060 0.940 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.108 0.892 29 H 0.227 0.773 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -6.408 -0.259 -3.728 7.418 hybrid contribution 1.069 -0.690 0.820 1.514 sum -5.339 -0.950 -2.907 6.153 Atomic orbital electron populations 1.21916 0.97024 1.01064 1.00382 1.21088 0.93440 1.00196 0.95581 0.91178 1.21569 0.96786 0.99670 0.96557 1.21527 0.94501 1.00983 0.98358 1.22201 1.03621 0.97739 0.94015 1.18527 0.87908 0.80077 0.91602 1.86080 1.27596 1.29133 1.97306 1.21842 0.91794 1.35684 1.07350 0.92278 1.24994 0.96882 0.95025 0.96439 1.69601 1.02391 1.46700 1.35423 0.86557 0.78196 0.79659 0.83337 1.20706 1.21199 1.19920 1.20928 0.96663 0.94773 0.95793 0.92596 1.21872 0.98199 0.97176 1.02278 0.92920 0.93351 0.93878 0.93954 0.92717 0.92449 0.94444 0.93889 0.89216 0.77294 0.92545 0.92801 0.92222 0.94438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 8.84 37.16 0.33 -1.97 16 2 C -0.08 -1.60 2.35 -90.62 -0.21 -1.82 16 3 H 0.07 1.45 7.68 -51.93 -0.40 1.05 16 4 C -0.11 -1.96 4.93 -26.73 -0.13 -2.09 16 5 C -0.12 -2.35 5.78 -26.73 -0.15 -2.51 16 6 C -0.14 -3.23 4.42 -26.73 -0.12 -3.35 16 7 C 0.26 6.38 0.45 -91.78 -0.04 6.34 16 8 O -0.59 -15.51 11.61 -35.23 -0.41 -15.92 16 9 C -0.53 -14.22 7.52 -34.44 -0.26 -14.48 16 10 H 0.06 1.59 6.71 -52.49 -0.35 1.24 16 11 C 0.07 1.80 5.22 -17.82 -0.09 1.70 16 12 N -0.90 -24.28 9.68 55.43 0.54 -23.74 16 13 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 14 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 15 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 17 C -0.06 -1.36 1.95 -90.61 -0.18 -1.54 16 18 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 19 C -0.14 -2.68 7.89 37.16 0.29 -2.39 16 20 H 0.05 0.78 6.43 -51.93 -0.33 0.45 16 21 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.05 0.96 6.43 -51.93 -0.33 0.62 16 25 H 0.06 1.21 7.68 -51.93 -0.40 0.81 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.04 1.00 6.43 -51.93 -0.33 0.66 16 28 H 0.09 2.33 6.07 -51.93 -0.32 2.02 16 29 H 0.38 10.15 7.14 45.56 0.33 10.47 16 30 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 31 H 0.05 1.03 4.81 -51.93 -0.25 0.78 16 32 H 0.06 1.22 6.62 -51.93 -0.34 0.88 16 33 H 0.04 0.62 6.43 -51.93 -0.33 0.29 16 LS Contribution 242.93 15.07 3.66 3.66 Total: -1.00 -26.85 242.93 -6.11 -32.97 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -4.32 Total: 9.18 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: -0.57 Total: -22.11 kcal Atomic # 7 Polarization: -24.28 SS G_CDS: 0.54 Total: -23.74 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.41 Total: -15.92 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -26.85 -6.11 -32.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879269.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.712 kcal (2) G-P(sol) polarization free energy of solvation -26.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds