Wall clock time and date at job start Mon Mar 30 2020 02:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47067 * 2 1 4 4 C 1.52997 * 109.47143 * 239.99982 * 2 1 3 5 5 C 1.53002 * 109.46817 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.47233 * 60.00194 * 5 4 2 7 7 C 1.52997 * 109.47060 * 299.99657 * 6 5 4 8 8 O 1.42905 * 109.47264 * 300.00236 * 7 6 5 9 9 C 1.50697 * 109.47466 * 180.02562 * 7 6 5 10 10 H 1.07999 * 120.00055 * 240.00165 * 9 7 6 11 11 C 1.37878 * 119.99687 * 60.00188 * 9 7 6 12 12 N 1.31511 * 120.00458 * 359.97438 * 11 9 7 13 13 Si 1.86805 * 119.99926 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.46980 * 89.99582 * 13 11 9 15 15 H 1.48493 * 109.47135 * 209.99651 * 13 11 9 16 16 H 1.48498 * 109.47274 * 330.00048 * 13 11 9 17 17 C 1.52999 * 109.47317 * 59.99960 * 7 6 5 18 18 H 1.09000 * 109.47486 * 180.02562 * 17 7 6 19 19 C 1.53006 * 109.46997 * 60.00177 * 17 7 6 20 20 H 1.09002 * 109.47067 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47312 * 300.00027 * 1 2 3 22 22 H 1.09004 * 109.46930 * 60.00083 * 1 2 3 23 23 H 1.08993 * 109.47194 * 59.99677 * 4 2 1 24 24 H 1.09002 * 109.46695 * 299.99691 * 4 2 1 25 25 H 1.08992 * 109.47063 * 299.99823 * 5 4 2 26 26 H 1.09004 * 109.46733 * 179.97438 * 5 4 2 27 27 H 1.09002 * 109.47398 * 59.99826 * 6 5 4 28 28 H 1.09001 * 109.47194 * 180.02562 * 6 5 4 29 29 H 0.96696 * 114.00036 * 299.99911 * 8 7 6 30 30 H 0.96999 * 120.00480 * 179.97438 * 12 11 9 31 31 H 1.09000 * 109.46866 * 300.00212 * 19 17 7 32 32 H 1.08996 * 109.47261 * 59.99820 * 19 17 7 33 33 H 1.09001 * 109.47377 * 180.02562 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5700 -0.7218 -1.2488 6 6 4.0795 -1.4434 0.0004 7 6 3.5695 -0.7222 1.2496 8 8 4.0463 0.6250 1.2499 9 6 4.0718 -1.4325 2.4801 10 1 3.3699 -1.8429 3.1910 11 6 5.4273 -1.5584 2.6983 12 7 6.2820 -1.0591 1.8325 13 14 6.0500 -2.4396 4.2233 14 1 6.2151 -3.8853 3.9268 15 1 7.3581 -1.8647 4.6277 16 1 5.0718 -2.2693 5.3275 17 6 2.0395 -0.7215 1.2493 18 1 1.6761 -0.2073 2.1391 19 6 1.5290 -2.1639 1.2491 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.6767 -0.2075 -2.1392 24 1 1.6767 -1.7489 -1.2491 25 1 3.9337 0.3057 -1.2486 26 1 3.9334 -1.2360 -2.1386 27 1 3.7158 -2.4710 0.0002 28 1 5.1695 -1.4434 0.0009 29 1 5.0103 0.7011 1.2502 30 1 7.2357 -1.1473 1.9862 31 1 1.8923 -2.6777 0.3591 32 1 1.8919 -2.6780 2.1390 33 1 0.4389 -2.1635 1.2484 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085879269.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:06 Heat of formation + Delta-G solvation = -96.119257 kcal Electronic energy + Delta-G solvation = -13945.583066 eV Core-core repulsion = 11776.346964 eV Total energy + Delta-G solvation = -2169.236101 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.51182 -36.40464 -34.08070 -33.05225 -31.89401 -28.11103 -26.81201 -25.91655 -22.63440 -21.85829 -19.00756 -18.72609 -17.01614 -16.41933 -16.09306 -15.72077 -15.10235 -14.55902 -13.86100 -13.70140 -13.38321 -13.18359 -12.90075 -12.82535 -12.73007 -12.46070 -12.23790 -12.13950 -11.96954 -11.74885 -11.25807 -11.17034 -10.88304 -10.55830 -10.33806 -9.78976 -8.10054 -6.28038 1.38494 1.41031 1.49936 2.40760 3.09163 3.98485 4.04227 4.12509 4.36603 4.52547 4.68646 4.69403 4.75756 4.85877 4.97597 5.02194 5.09136 5.17118 5.19243 5.26531 5.31778 5.42424 5.46195 5.50109 5.66168 5.69400 5.79476 5.99446 6.19016 6.33085 6.78490 7.42441 7.59142 8.89059 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.049223 B = 0.013031 C = 0.011827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.700335 B = 2148.153303 C = 2366.811437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.083 4.083 3 H 0.047 0.953 4 C -0.103 4.103 5 C -0.113 4.113 6 C -0.130 4.130 7 C 0.244 3.756 8 O -0.600 6.600 9 C -0.552 4.552 10 H 0.050 0.950 11 C 0.025 3.975 12 N -0.915 5.915 13 Si 0.951 3.049 14 H -0.275 1.275 15 H -0.283 1.283 16 H -0.275 1.275 17 C -0.065 4.065 18 H 0.035 0.965 19 C -0.130 4.130 20 H 0.065 0.935 21 H 0.048 0.952 22 H 0.064 0.936 23 H 0.070 0.930 24 H 0.067 0.933 25 H 0.041 0.959 26 H 0.056 0.944 27 H 0.041 0.959 28 H 0.059 0.941 29 H 0.369 0.631 30 H 0.265 0.735 31 H 0.057 0.943 32 H 0.041 0.959 33 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.309 -1.022 -4.415 8.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.101 4.101 3 H 0.065 0.935 4 C -0.141 4.141 5 C -0.151 4.151 6 C -0.168 4.168 7 C 0.205 3.795 8 O -0.408 6.408 9 C -0.590 4.590 10 H 0.069 0.931 11 C -0.174 4.174 12 N -0.556 5.556 13 Si 0.778 3.222 14 H -0.201 1.201 15 H -0.208 1.208 16 H -0.200 1.200 17 C -0.084 4.084 18 H 0.054 0.946 19 C -0.187 4.187 20 H 0.084 0.916 21 H 0.067 0.933 22 H 0.083 0.917 23 H 0.088 0.912 24 H 0.086 0.914 25 H 0.060 0.940 26 H 0.075 0.925 27 H 0.060 0.940 28 H 0.077 0.923 29 H 0.218 0.782 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.777 -0.880 -4.444 9.000 hybrid contribution 1.521 -0.474 1.058 1.912 sum -6.257 -1.354 -3.386 7.242 Atomic orbital electron populations 1.21847 0.93954 1.02300 1.01593 1.21037 0.95994 0.98488 0.94608 0.93476 1.21551 0.94688 1.00676 0.97139 1.21477 0.96518 0.99716 0.97344 1.22019 1.01665 0.97900 0.95262 1.18808 0.90073 0.79141 0.91433 1.86087 1.26883 1.30492 1.97377 1.22133 0.92145 1.36359 1.08349 0.93132 1.25656 0.97102 0.95720 0.98889 1.69710 1.02461 1.47013 1.36397 0.85669 0.77523 0.78806 0.80242 1.20103 1.20848 1.20005 1.20933 0.94423 0.96475 0.96535 0.94622 1.21796 1.00101 0.95278 1.01536 0.91593 0.93281 0.91674 0.91179 0.91449 0.93971 0.92543 0.94043 0.92263 0.78240 0.92508 0.92443 0.94027 0.91279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.89 8.84 71.98 0.64 -3.25 16 2 C -0.08 -2.98 2.35 -10.79 -0.03 -3.00 16 3 H 0.05 1.90 7.68 -2.39 -0.02 1.88 16 4 C -0.10 -3.43 4.93 30.59 0.15 -3.28 16 5 C -0.11 -4.43 5.78 30.60 0.18 -4.25 16 6 C -0.13 -6.13 4.42 30.59 0.14 -5.99 16 7 C 0.24 12.21 0.45 -11.54 -0.01 12.20 16 8 O -0.60 -32.25 11.61 -148.98 -1.73 -33.98 16 9 C -0.55 -30.16 7.52 25.60 0.19 -29.97 16 10 H 0.05 2.77 6.71 -2.91 -0.02 2.75 16 11 C 0.03 1.36 5.22 84.66 0.44 1.81 16 12 N -0.91 -50.17 9.68 21.45 0.21 -49.96 16 13 Si 0.95 43.32 29.54 68.60 2.03 45.34 16 14 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 15 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 16 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 17 C -0.06 -2.76 1.95 -10.79 -0.02 -2.78 16 18 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 19 C -0.13 -4.83 7.89 71.98 0.57 -4.26 16 20 H 0.07 1.66 6.43 -2.39 -0.02 1.65 16 21 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 22 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 23 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 24 H 0.07 2.09 6.43 -2.39 -0.02 2.08 16 25 H 0.04 1.76 7.68 -2.39 -0.02 1.74 16 26 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.04 1.91 6.43 -2.39 -0.02 1.90 16 28 H 0.06 3.14 6.07 -2.39 -0.01 3.12 16 29 H 0.37 20.57 7.14 -74.06 -0.53 20.04 16 30 H 0.27 13.92 8.31 -92.71 -0.77 13.15 16 31 H 0.06 2.07 4.81 -2.39 -0.01 2.06 16 32 H 0.04 1.67 6.62 -2.39 -0.02 1.65 16 33 H 0.07 2.10 6.43 -2.39 -0.02 2.09 16 Total: -1.00 -57.43 242.93 3.32 -54.11 By element: Atomic # 1 Polarization: 26.71 SS G_CDS: 0.56 Total: 27.27 kcal Atomic # 6 Polarization: -45.04 SS G_CDS: 2.25 Total: -42.79 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: 0.21 Total: -49.96 kcal Atomic # 8 Polarization: -32.25 SS G_CDS: -1.73 Total: -33.98 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Total: -57.43 3.32 -54.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879269.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.007 kcal (2) G-P(sol) polarization free energy of solvation -57.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds