Wall clock time and date at job start Mon Mar 30 2020 02:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.46450 * 2 1 4 4 C 1.52998 * 109.47276 * 240.00617 * 2 1 3 5 5 C 1.52994 * 109.47205 * 299.99440 * 4 2 1 6 6 C 1.53003 * 109.47208 * 300.00198 * 5 4 2 7 7 C 1.53008 * 109.47223 * 59.99813 * 6 5 4 8 8 O 1.42903 * 109.46685 * 59.99671 * 7 6 5 9 9 C 1.50696 * 109.47182 * 180.02562 * 7 6 5 10 10 H 1.08003 * 119.99770 * 119.99806 * 9 7 6 11 11 C 1.37878 * 120.00039 * 299.99738 * 9 7 6 12 12 N 1.31511 * 119.99830 * 0.02562 * 11 9 7 13 13 Si 1.86798 * 119.99809 * 180.02562 * 11 9 7 14 14 H 1.48495 * 109.47214 * 60.00251 * 13 11 9 15 15 H 1.48500 * 109.46808 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47179 * 299.99808 * 13 11 9 17 17 C 1.52999 * 109.47545 * 120.00072 * 2 1 3 18 18 H 1.08993 * 109.47285 * 180.02562 * 17 2 1 19 19 C 1.53008 * 109.46972 * 300.00743 * 17 2 1 20 20 H 1.09007 * 109.46306 * 169.57360 * 1 2 3 21 21 H 1.09001 * 109.47328 * 289.56832 * 1 2 3 22 22 H 1.08988 * 109.47504 * 49.57834 * 1 2 3 23 23 H 1.09004 * 109.47069 * 179.97438 * 4 2 1 24 24 H 1.09000 * 109.46970 * 59.99808 * 4 2 1 25 25 H 1.08996 * 109.47711 * 180.02562 * 5 4 2 26 26 H 1.09004 * 109.46988 * 60.00096 * 5 4 2 27 27 H 1.09001 * 109.47345 * 300.00285 * 6 5 4 28 28 H 1.08995 * 109.47131 * 179.97438 * 6 5 4 29 29 H 0.96701 * 113.99653 * 60.01264 * 8 7 6 30 30 H 0.96998 * 120.00079 * 180.02562 * 12 11 9 31 31 H 1.08996 * 109.46776 * 179.97438 * 19 17 2 32 32 H 1.09005 * 109.46855 * 299.99420 * 19 17 2 33 33 H 1.09001 * 109.46890 * 59.99658 * 19 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 1.5302 -2.1636 -1.2494 6 6 2.0403 -2.8849 -0.0002 7 6 1.5302 -2.1638 1.2492 8 8 0.1012 -2.1639 1.2491 9 6 2.0331 -2.8739 2.4795 10 1 2.6540 -2.3486 3.1903 11 6 1.7006 -4.1940 2.6979 12 7 0.9450 -4.8336 1.8322 13 14 2.3234 -5.0739 4.2234 14 1 1.8278 -4.3739 5.4357 15 1 1.8296 -6.4744 4.2233 16 1 3.8084 -5.0733 4.2237 17 6 2.0401 -0.7212 1.2492 18 1 3.1301 -0.7208 1.2494 19 6 1.5300 -0.0001 2.4985 20 1 -0.3632 -1.0108 -0.1860 21 1 -0.3634 0.3442 0.9683 22 1 -0.3634 0.6663 -0.7822 23 1 3.1301 -0.7207 -1.2495 24 1 1.6767 -0.2072 -2.1392 25 1 1.8939 -2.6775 -2.1391 26 1 0.4402 -2.1637 -1.2494 27 1 3.1303 -2.8848 -0.0001 28 1 1.6767 -3.9124 -0.0001 29 1 -0.2920 -3.0473 1.2491 30 1 0.7107 -5.7622 1.9860 31 1 1.8930 -0.5142 3.3884 32 1 1.8933 1.0277 2.4986 33 1 0.4400 -0.0002 2.4984 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085879280.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:08 Heat of formation + Delta-G solvation = -72.854917 kcal Electronic energy + Delta-G solvation = -14107.482644 eV Core-core repulsion = 11939.255360 eV Total energy + Delta-G solvation = -2168.227284 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.84594 -34.21721 -32.03219 -31.75668 -29.76890 -26.21856 -25.33531 -24.15858 -20.59871 -20.12885 -17.47043 -16.86007 -14.98190 -14.77733 -14.17314 -13.52440 -13.20956 -13.03666 -12.23017 -12.07483 -11.98505 -11.18905 -11.07813 -10.97649 -10.87432 -10.74485 -10.44234 -10.23108 -9.97716 -9.88447 -9.55475 -9.44363 -9.24594 -8.62263 -8.38514 -7.74133 -6.06333 -4.16822 3.28170 3.32970 3.36266 4.37852 5.16071 5.63285 5.64955 5.68433 6.15885 6.20782 6.21852 6.39827 6.44011 6.44647 6.53642 6.68606 6.72793 6.77516 6.84521 6.95726 7.01013 7.11111 7.23040 7.35356 7.45120 7.57216 7.73698 7.85963 8.13322 8.33099 8.84963 9.50810 9.68159 10.94886 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.046865 B = 0.014053 C = 0.012630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.322783 B = 1991.940563 C = 2216.367690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.081 4.081 3 H 0.044 0.956 4 C -0.109 4.109 5 C -0.117 4.117 6 C -0.138 4.138 7 C 0.261 3.739 8 O -0.578 6.578 9 C -0.529 4.529 10 H 0.058 0.942 11 C 0.068 3.932 12 N -0.899 5.899 13 Si 0.894 3.106 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.278 1.278 17 C -0.066 4.066 18 H 0.057 0.943 19 C -0.132 4.132 20 H 0.095 0.905 21 H 0.051 0.949 22 H 0.019 0.981 23 H 0.048 0.952 24 H 0.043 0.957 25 H 0.036 0.964 26 H 0.063 0.937 27 H 0.037 0.963 28 H 0.091 0.909 29 H 0.371 0.629 30 H 0.265 0.735 31 H 0.056 0.944 32 H 0.024 0.976 33 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.458 4.880 -3.163 5.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.100 4.100 3 H 0.063 0.937 4 C -0.147 4.147 5 C -0.155 4.155 6 C -0.176 4.176 7 C 0.222 3.778 8 O -0.387 6.387 9 C -0.567 4.567 10 H 0.076 0.924 11 C -0.132 4.132 12 N -0.540 5.540 13 Si 0.722 3.278 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.204 1.204 17 C -0.085 4.085 18 H 0.075 0.925 19 C -0.189 4.189 20 H 0.113 0.887 21 H 0.070 0.930 22 H 0.038 0.962 23 H 0.067 0.933 24 H 0.062 0.938 25 H 0.054 0.946 26 H 0.081 0.919 27 H 0.055 0.945 28 H 0.110 0.890 29 H 0.221 0.779 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.043 0.957 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.476 5.353 -3.188 6.248 hybrid contribution 0.462 -1.168 0.823 1.501 sum 0.938 4.185 -2.366 4.898 Atomic orbital electron populations 1.22141 0.94976 1.03567 0.99590 1.21054 0.96764 0.97013 0.95161 0.93749 1.21528 0.99389 0.96870 0.96905 1.21591 1.01025 0.94581 0.98287 1.22187 0.98748 1.02478 0.94173 1.18460 0.79081 0.88907 0.91339 1.86228 1.21641 1.34032 1.96758 1.21797 1.31371 0.96125 1.07418 0.92429 1.24971 0.94680 0.97195 0.96380 1.69589 1.37616 1.11498 1.35342 0.86632 0.79129 0.78501 0.83553 1.20267 1.21316 1.20373 1.21070 0.98159 0.96110 0.93124 0.92501 1.21722 1.01721 0.96928 0.98533 0.88718 0.93004 0.96204 0.93302 0.93814 0.94571 0.91855 0.94452 0.89031 0.77892 0.92522 0.92534 0.95669 0.92158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 7.70 37.16 0.29 -2.49 16 2 C -0.08 -1.55 2.72 -90.62 -0.25 -1.80 16 3 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 4 C -0.11 -1.99 5.45 -26.74 -0.15 -2.14 16 5 C -0.12 -2.34 5.59 -26.73 -0.15 -2.49 16 6 C -0.14 -3.21 4.69 -26.73 -0.13 -3.33 16 7 C 0.26 6.26 0.35 -91.77 -0.03 6.23 16 8 O -0.58 -14.05 8.07 -35.23 -0.28 -14.33 16 9 C -0.53 -14.01 7.52 -34.44 -0.26 -14.27 16 10 H 0.06 1.54 6.71 -52.48 -0.35 1.19 16 11 C 0.07 1.80 5.22 -17.82 -0.09 1.71 16 12 N -0.90 -23.86 9.68 55.43 0.54 -23.33 16 13 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 C -0.07 -1.42 1.95 -90.62 -0.18 -1.59 16 18 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 19 C -0.13 -2.70 8.47 37.16 0.31 -2.39 16 20 H 0.09 1.96 3.76 -51.92 -0.20 1.76 16 21 H 0.05 1.00 5.94 -51.93 -0.31 0.69 16 22 H 0.02 0.33 8.14 -51.94 -0.42 -0.10 16 23 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 1.29 5.96 -51.93 -0.31 0.98 16 27 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.09 2.34 6.07 -51.93 -0.32 2.03 16 29 H 0.37 9.51 7.15 45.56 0.33 9.84 16 30 H 0.26 6.80 8.31 -40.82 -0.34 6.47 16 31 H 0.06 1.21 6.62 -51.93 -0.34 0.87 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 1.27 5.76 -51.93 -0.30 0.97 16 LS Contribution 239.67 15.07 3.61 3.61 Total: -1.00 -25.80 239.67 -6.10 -31.90 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -4.31 Total: 8.87 kcal Atomic # 6 Polarization: -21.94 SS G_CDS: -0.63 Total: -22.56 kcal Atomic # 7 Polarization: -23.86 SS G_CDS: 0.54 Total: -23.33 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -0.28 Total: -14.33 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -25.80 -6.10 -31.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879280.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.955 kcal (2) G-P(sol) polarization free energy of solvation -25.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds